| |
|
|
| import itertools |
|
|
| import pytest |
| import numpy as np |
| from numpy.testing import assert_allclose, assert_array_almost_equal_nulp |
|
|
| from astropy.convolution.convolve import convolve_fft, convolve |
| from astropy.utils.exceptions import AstropyUserWarning |
|
|
|
|
| VALID_DTYPES = ('>f4', '<f4', '>f8', '<f8') |
| VALID_DTYPE_MATRIX = list(itertools.product(VALID_DTYPES, VALID_DTYPES)) |
|
|
| BOUNDARY_OPTIONS = [None, 'fill', 'wrap'] |
| NANTREATMENT_OPTIONS = ('interpolate', 'fill') |
| NORMALIZE_OPTIONS = [True, False] |
| PRESERVE_NAN_OPTIONS = [True, False] |
|
|
| """ |
| What does convolution mean? We use the 'same size' assumption here (i.e., |
| you expect an array of the exact same size as the one you put in) |
| Convolving any array with a kernel that is [1] should result in the same array returned |
| Working example array: [1, 2, 3, 4, 5] |
| Convolved with [1] = [1, 2, 3, 4, 5] |
| Convolved with [1, 1] = [1, 3, 5, 7, 9] THIS IS NOT CONSISTENT! |
| Convolved with [1, 0] = [1, 2, 3, 4, 5] |
| Convolved with [0, 1] = [0, 1, 2, 3, 4] |
| """ |
|
|
| |
| option_names = ('boundary', 'nan_treatment', 'normalize_kernel') |
| options = list(itertools.product(BOUNDARY_OPTIONS, |
| NANTREATMENT_OPTIONS, |
| (True, False), |
| )) |
| option_names_preserve_nan = ('boundary', 'nan_treatment', |
| 'normalize_kernel', 'preserve_nan') |
| options_preserve_nan = list(itertools.product(BOUNDARY_OPTIONS, |
| NANTREATMENT_OPTIONS, |
| (True, False), |
| (True, False))) |
|
|
|
|
| def assert_floatclose(x, y): |
| """Assert arrays are close to within expected floating point rounding. |
| |
| Check that the result is correct at the precision expected for 64 bit |
| numbers, taking account that the tolerance has to reflect that all powers |
| in the FFTs enter our values. |
| """ |
| |
| |
| assert_allclose(x, y, atol=10*np.spacing(x.max()), rtol=0.) |
|
|
|
|
| class TestConvolve1D: |
|
|
| @pytest.mark.parametrize(option_names, options) |
| def test_unity_1_none(self, boundary, nan_treatment, normalize_kernel): |
| ''' |
| Test that a unit kernel with a single element returns the same array |
| ''' |
|
|
| x = np.array([1., 2., 3.], dtype='float64') |
|
|
| y = np.array([1.], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
|
|
| assert_floatclose(z, x) |
|
|
| @pytest.mark.parametrize(option_names, options) |
| def test_unity_3(self, boundary, nan_treatment, normalize_kernel): |
| ''' |
| Test that a unit kernel with three elements returns the same array |
| (except when boundary is None). |
| ''' |
|
|
| x = np.array([1., 2., 3.], dtype='float64') |
|
|
| y = np.array([0., 1., 0.], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
|
|
| assert_floatclose(z, x) |
|
|
| @pytest.mark.parametrize(option_names, options) |
| def test_uniform_3(self, boundary, nan_treatment, normalize_kernel): |
| ''' |
| Test that the different modes are producing the correct results using |
| a uniform kernel with three elements |
| ''' |
|
|
| x = np.array([1., 0., 3.], dtype='float64') |
|
|
| y = np.array([1., 1., 1.], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
|
|
| answer_key = (boundary, nan_treatment, normalize_kernel) |
|
|
| answer_dict = { |
| 'sum_fill_zeros': np.array([1., 4., 3.], dtype='float64'), |
| 'average_fill_zeros': np.array([1 / 3., 4 / 3., 1.], dtype='float64'), |
| 'sum_wrap': np.array([4., 4., 4.], dtype='float64'), |
| 'average_wrap': np.array([4 / 3., 4 / 3., 4 / 3.], dtype='float64'), |
| } |
|
|
| result_dict = { |
| |
| ('fill', 'interpolate', True): answer_dict['average_fill_zeros'], |
| ('wrap', 'interpolate', True): answer_dict['average_wrap'], |
| ('fill', 'interpolate', False): answer_dict['sum_fill_zeros'], |
| ('wrap', 'interpolate', False): answer_dict['sum_wrap'], |
| } |
| for k in list(result_dict.keys()): |
| result_dict[(k[0], 'fill', k[2])] = result_dict[k] |
| for k in list(result_dict.keys()): |
| if k[0] == 'fill': |
| result_dict[(None, k[1], k[2])] = result_dict[k] |
|
|
| assert_floatclose(z, result_dict[answer_key]) |
|
|
| @pytest.mark.parametrize(option_names, options) |
| def test_halfity_3(self, boundary, nan_treatment, normalize_kernel): |
| ''' |
| Test that the different modes are producing the correct results using |
| a uniform, non-unity kernel with three elements |
| ''' |
|
|
| x = np.array([1., 0., 3.], dtype='float64') |
|
|
| y = np.array([0.5, 0.5, 0.5], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
|
|
| answer_dict = { |
| 'sum': np.array([0.5, 2.0, 1.5], dtype='float64'), |
| 'sum_zeros': np.array([0.5, 2., 1.5], dtype='float64'), |
| 'sum_nozeros': np.array([0.5, 2., 1.5], dtype='float64'), |
| 'average': np.array([1 / 3., 4 / 3., 1.], dtype='float64'), |
| 'sum_wrap': np.array([2., 2., 2.], dtype='float64'), |
| 'average_wrap': np.array([4 / 3., 4 / 3., 4 / 3.], dtype='float64'), |
| 'average_zeros': np.array([1 / 3., 4 / 3., 1.], dtype='float64'), |
| 'average_nozeros': np.array([0.5, 4 / 3., 1.5], dtype='float64'), |
| } |
|
|
| if normalize_kernel: |
| answer_key = 'average' |
| else: |
| answer_key = 'sum' |
|
|
| if boundary == 'wrap': |
| answer_key += '_wrap' |
| else: |
| |
| answer_key += '_zeros' |
|
|
| assert_floatclose(z, answer_dict[answer_key]) |
|
|
| @pytest.mark.parametrize(option_names_preserve_nan, options_preserve_nan) |
| def test_unity_3_withnan(self, boundary, nan_treatment, normalize_kernel, |
| preserve_nan): |
| ''' |
| Test that a unit kernel with three elements returns the same array |
| (except when boundary is None). This version includes a NaN value in |
| the original array. |
| ''' |
|
|
| x = np.array([1., np.nan, 3.], dtype='float64') |
|
|
| y = np.array([0., 1., 0.], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
|
|
| if preserve_nan: |
| assert np.isnan(z[1]) |
|
|
| z = np.nan_to_num(z) |
|
|
| assert_floatclose(z, [1., 0., 3.]) |
|
|
| inputs = (np.array([1., np.nan, 3.], dtype='float64'), |
| np.array([1., np.inf, 3.], dtype='float64')) |
| outputs = (np.array([1., 0., 3.], dtype='float64'), |
| np.array([1., 0., 3.], dtype='float64')) |
| options_unity1withnan = list(itertools.product(BOUNDARY_OPTIONS, |
| NANTREATMENT_OPTIONS, |
| (True, False), |
| (True, False), |
| inputs, outputs)) |
|
|
| @pytest.mark.parametrize(option_names_preserve_nan + ('inval', 'outval'), |
| options_unity1withnan) |
| def test_unity_1_withnan(self, boundary, nan_treatment, normalize_kernel, |
| preserve_nan, inval, outval): |
| ''' |
| Test that a unit kernel with three elements returns the same array |
| (except when boundary is None). This version includes a NaN value in |
| the original array. |
| ''' |
|
|
| x = inval |
|
|
| y = np.array([1.], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
|
|
| if preserve_nan: |
| assert np.isnan(z[1]) |
|
|
| z = np.nan_to_num(z) |
|
|
| assert_floatclose(z, outval) |
|
|
| @pytest.mark.parametrize(option_names_preserve_nan, options_preserve_nan) |
| def test_uniform_3_withnan(self, boundary, nan_treatment, |
| normalize_kernel, preserve_nan): |
| ''' |
| Test that the different modes are producing the correct results using |
| a uniform kernel with three elements. This version includes a NaN |
| value in the original array. |
| ''' |
|
|
| x = np.array([1., np.nan, 3.], dtype='float64') |
|
|
| y = np.array([1., 1., 1.], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
|
|
| if preserve_nan: |
| assert np.isnan(z[1]) |
|
|
| answer_dict = { |
| 'sum': np.array([1., 4., 3.], dtype='float64'), |
| 'sum_nozeros': np.array([1., 4., 3.], dtype='float64'), |
| 'sum_zeros': np.array([1., 4., 3.], dtype='float64'), |
| 'sum_nozeros_interpnan': np.array([1., 4., 3.], dtype='float64'), |
| 'average': np.array([1., 2., 3.], dtype='float64'), |
| 'sum_wrap': np.array([4., 4., 4.], dtype='float64'), |
| 'average_wrap': np.array([4/3., 4/3., 4/3.], dtype='float64'), |
| 'average_wrap_interpnan': np.array([2, 2, 2], dtype='float64'), |
| 'average_nozeros': np.array([1/2., 4/3., 3/2.], dtype='float64'), |
| 'average_nozeros_interpnan': np.array([1., 2., 3.], dtype='float64'), |
| 'average_zeros': np.array([1 / 3., 4 / 3., 3 / 3.], dtype='float64'), |
| 'average_zeros_interpnan': np.array([1 / 2., 4 / 2., 3 / 2.], dtype='float64'), |
| } |
|
|
| for key in list(answer_dict.keys()): |
| if 'sum' in key: |
| answer_dict[key+"_interpnan"] = answer_dict[key] * 3./2. |
|
|
| if normalize_kernel: |
| answer_key = 'average' |
| else: |
| answer_key = 'sum' |
|
|
| if boundary == 'wrap': |
| answer_key += '_wrap' |
| else: |
| |
| answer_key += '_zeros' |
|
|
| if nan_treatment == 'interpolate': |
| answer_key += '_interpnan' |
|
|
| posns = np.where(np.isfinite(z)) |
|
|
| assert_floatclose(z[posns], answer_dict[answer_key][posns]) |
|
|
| def test_nan_fill(self): |
|
|
| |
| array = np.array([1., np.nan, 3.], dtype='float64') |
| kernel = np.array([1, 1, 1]) |
| masked_array = np.ma.masked_array(array, mask=[0, 1, 0]) |
| result = convolve_fft(masked_array, kernel, boundary='fill', |
| fill_value=np.nan) |
| assert_floatclose(result, [1, 2, 3]) |
|
|
| def test_masked_array(self): |
| """ |
| Check whether convolve_fft works with masked arrays. |
| """ |
|
|
| |
| array = np.array([1., 2., 3.], dtype='float64') |
| kernel = np.array([1, 1, 1]) |
| masked_array = np.ma.masked_array(array, mask=[0, 1, 0]) |
| result = convolve_fft(masked_array, kernel, boundary='fill', |
| fill_value=0.) |
| assert_floatclose(result, [1./2, 2, 3./2]) |
|
|
| |
| convolve_result = convolve(masked_array, kernel, boundary='fill', |
| fill_value=0.) |
| assert_floatclose(convolve_result, result) |
|
|
| |
| array = np.array([1., 2., 3.], dtype='float64') |
| kernel = np.array([1, 1, 1]) |
| masked_kernel = np.ma.masked_array(kernel, mask=[0, 1, 0]) |
| result = convolve_fft(array, masked_kernel, boundary='fill', |
| fill_value=0.) |
| assert_floatclose(result, [1, 2, 1]) |
|
|
| |
| convolve_result = convolve(array, masked_kernel, boundary='fill', |
| fill_value=0.) |
| assert_floatclose(convolve_result, result) |
|
|
| def test_normalize_function(self): |
| """ |
| Check if convolve_fft works when passing a normalize function. |
| """ |
| array = [1, 2, 3] |
| kernel = [3, 3, 3] |
| result = convolve_fft(array, kernel, normalize_kernel=np.max) |
| assert_floatclose(result, [3, 6, 5]) |
|
|
| @pytest.mark.parametrize(option_names, options) |
| def test_normalization_is_respected(self, boundary, |
| nan_treatment, |
| normalize_kernel): |
| """ |
| Check that if normalize_kernel is False then the normalization |
| tolerance is respected. |
| """ |
| array = np.array([1, 2, 3]) |
| |
| base_kernel = np.array([1.0]) |
|
|
| |
| normalization_rtol = 1e-4 |
|
|
| |
| norm_error = [normalization_rtol / 10, normalization_rtol * 10] |
|
|
| for err in norm_error: |
| kernel = base_kernel + err |
| result = convolve_fft(array, kernel, |
| normalize_kernel=normalize_kernel, |
| nan_treatment=nan_treatment, |
| normalization_zero_tol=normalization_rtol) |
| if normalize_kernel: |
| |
| assert_floatclose(result, array) |
| else: |
| |
| assert_floatclose(result, array * kernel) |
|
|
|
|
| class TestConvolve2D: |
|
|
| @pytest.mark.parametrize(option_names, options) |
| def test_unity_1x1_none(self, boundary, nan_treatment, normalize_kernel): |
| ''' |
| Test that a 1x1 unit kernel returns the same array |
| ''' |
|
|
| x = np.array([[1., 2., 3.], |
| [4., 5., 6.], |
| [7., 8., 9.]], dtype='float64') |
|
|
| y = np.array([[1.]], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
|
|
| assert_floatclose(z, x) |
|
|
| @pytest.mark.parametrize(option_names, options) |
| def test_unity_3x3(self, boundary, nan_treatment, normalize_kernel): |
| ''' |
| Test that a 3x3 unit kernel returns the same array (except when |
| boundary is None). |
| ''' |
|
|
| x = np.array([[1., 2., 3.], |
| [4., 5., 6.], |
| [7., 8., 9.]], dtype='float64') |
|
|
| y = np.array([[0., 0., 0.], |
| [0., 1., 0.], |
| [0., 0., 0.]], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel) |
|
|
| assert_floatclose(z, x) |
|
|
| @pytest.mark.parametrize(option_names, options) |
| def test_uniform_3x3(self, boundary, nan_treatment, normalize_kernel): |
| ''' |
| Test that the different modes are producing the correct results using |
| a 3x3 uniform kernel. |
| ''' |
|
|
| x = np.array([[0., 0., 3.], |
| [1., 0., 0.], |
| [0., 2., 0.]], dtype='float64') |
|
|
| y = np.array([[1., 1., 1.], |
| [1., 1., 1.], |
| [1., 1., 1.]], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| fill_value=np.nan if normalize_kernel else 0, |
| normalize_kernel=normalize_kernel) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| fill_value=np.nan if normalize_kernel else 0, |
| normalize_kernel=normalize_kernel) |
|
|
| w = np.array([[4., 6., 4.], |
| [6., 9., 6.], |
| [4., 6., 4.]], dtype='float64') |
| answer_dict = { |
| 'sum': np.array([[1., 4., 3.], |
| [3., 6., 5.], |
| [3., 3., 2.]], dtype='float64'), |
| 'sum_wrap': np.array([[6., 6., 6.], |
| [6., 6., 6.], |
| [6., 6., 6.]], dtype='float64'), |
| } |
| answer_dict['average'] = answer_dict['sum'] / w |
| answer_dict['average_wrap'] = answer_dict['sum_wrap'] / 9. |
| answer_dict['average_withzeros'] = answer_dict['sum'] / 9. |
| answer_dict['sum_withzeros'] = answer_dict['sum'] |
|
|
| if normalize_kernel: |
| answer_key = 'average' |
| else: |
| answer_key = 'sum' |
|
|
| if boundary == 'wrap': |
| answer_key += '_wrap' |
| elif nan_treatment == 'fill': |
| answer_key += '_withzeros' |
|
|
| a = answer_dict[answer_key] |
| assert_floatclose(z, a) |
|
|
| @pytest.mark.parametrize(option_names_preserve_nan, options_preserve_nan) |
| def test_unity_3x3_withnan(self, boundary, nan_treatment, |
| normalize_kernel, preserve_nan): |
| ''' |
| Test that a 3x3 unit kernel returns the same array (except when |
| boundary is None). This version includes a NaN value in the original |
| array. |
| ''' |
|
|
| x = np.array([[1., 2., 3.], |
| [4., np.nan, 6.], |
| [7., 8., 9.]], dtype='float64') |
|
|
| y = np.array([[0., 0., 0.], |
| [0., 1., 0.], |
| [0., 0., 0.]], dtype='float64') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
|
|
| if preserve_nan: |
| assert np.isnan(z[1, 1]) |
| z = np.nan_to_num(z) |
|
|
| x = np.nan_to_num(x) |
|
|
| assert_floatclose(z, x) |
|
|
| @pytest.mark.parametrize(option_names_preserve_nan, options_preserve_nan) |
| def test_uniform_3x3_withnan(self, boundary, nan_treatment, |
| normalize_kernel, preserve_nan): |
| ''' |
| Test that the different modes are producing the correct results using |
| a 3x3 uniform kernel. This version includes a NaN value in the |
| original array. |
| ''' |
|
|
| x = np.array([[0., 0., 3.], |
| [1., np.nan, 0.], |
| [0., 2., 0.]], dtype='float64') |
|
|
| y = np.array([[1., 1., 1.], |
| [1., 1., 1.], |
| [1., 1., 1.]], dtype='float64') |
|
|
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| fill_value=np.nan if normalize_kernel else 0, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, |
| nan_treatment=nan_treatment, |
| fill_value=np.nan if normalize_kernel else 0, |
| normalize_kernel=normalize_kernel, |
| preserve_nan=preserve_nan) |
|
|
| if preserve_nan: |
| assert np.isnan(z[1, 1]) |
|
|
| |
| w_n = np.array([[3., 5., 3.], |
| [5., 8., 5.], |
| [3., 5., 3.]], dtype='float64') |
| w_z = np.array([[4., 6., 4.], |
| [6., 9., 6.], |
| [4., 6., 4.]], dtype='float64') |
| answer_dict = { |
| 'sum': np.array([[1., 4., 3.], |
| [3., 6., 5.], |
| [3., 3., 2.]], dtype='float64'), |
| 'sum_wrap': np.array([[6., 6., 6.], |
| [6., 6., 6.], |
| [6., 6., 6.]], dtype='float64'), |
| } |
| answer_dict['average'] = answer_dict['sum'] / w_z |
| answer_dict['average_interpnan'] = answer_dict['sum'] / w_n |
| answer_dict['average_wrap_interpnan'] = answer_dict['sum_wrap'] / 8. |
| answer_dict['average_wrap'] = answer_dict['sum_wrap'] / 9. |
| answer_dict['average_withzeros'] = answer_dict['sum'] / 9. |
| answer_dict['average_withzeros_interpnan'] = answer_dict['sum'] / 8. |
| answer_dict['sum_withzeros'] = answer_dict['sum'] |
| answer_dict['sum_interpnan'] = answer_dict['sum'] * 9/8. |
| answer_dict['sum_withzeros_interpnan'] = answer_dict['sum'] |
| answer_dict['sum_wrap_interpnan'] = answer_dict['sum_wrap'] * 9/8. |
|
|
| if normalize_kernel: |
| answer_key = 'average' |
| else: |
| answer_key = 'sum' |
|
|
| if boundary == 'wrap': |
| answer_key += '_wrap' |
| elif nan_treatment == 'fill': |
| answer_key += '_withzeros' |
|
|
| if nan_treatment == 'interpolate': |
| answer_key += '_interpnan' |
|
|
| answer_dict[answer_key] |
|
|
| |
| posns = np.where(np.isfinite(z)) |
|
|
| |
| |
| assert_floatclose(z[posns], z[posns]) |
|
|
| def test_big_fail(self): |
| """ Test that convolve_fft raises an exception if a too-large array is passed in """ |
|
|
| with pytest.raises((ValueError, MemoryError)): |
| |
| |
| |
| arr = np.empty([512, 512, 512], dtype=complex) |
| |
| convolve_fft(arr, arr) |
|
|
| @pytest.mark.parametrize(('boundary'), BOUNDARY_OPTIONS) |
| def test_non_normalized_kernel(self, boundary): |
|
|
| x = np.array([[0., 0., 4.], |
| [1., 2., 0.], |
| [0., 3., 0.]], dtype='float') |
|
|
| y = np.array([[1., -1., 1.], |
| [-1., 0., -1.], |
| [1., -1., 1.]], dtype='float') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, nan_treatment='fill', |
| normalize_kernel=False) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, nan_treatment='fill', |
| normalize_kernel=False) |
|
|
| if boundary in (None, 'fill'): |
| assert_floatclose(z, np.array([[1., -5., 2.], |
| [1., 0., -3.], |
| [-2., -1., -1.]], dtype='float')) |
| elif boundary == 'wrap': |
| assert_floatclose(z, np.array([[0., -8., 6.], |
| [5., 0., -4.], |
| [2., 3., -4.]], dtype='float')) |
| else: |
| raise ValueError("Invalid boundary specification") |
|
|
|
|
| @pytest.mark.parametrize(('boundary'), BOUNDARY_OPTIONS) |
| def test_asymmetric_kernel(boundary): |
| ''' |
| Make sure that asymmetric convolution |
| functions go the right direction |
| ''' |
|
|
| x = np.array([3., 0., 1.], dtype='>f8') |
|
|
| y = np.array([1, 2, 3], dtype='>f8') |
|
|
| if boundary is None: |
| with pytest.warns(AstropyUserWarning, match="The convolve_fft " |
| "version of boundary=None is equivalent to the " |
| "convolve boundary='fill'"): |
| z = convolve_fft(x, y, boundary=boundary, normalize_kernel=False) |
| else: |
| z = convolve_fft(x, y, boundary=boundary, normalize_kernel=False) |
|
|
| if boundary in (None, 'fill'): |
| assert_array_almost_equal_nulp(z, np.array([6., 10., 2.], dtype='float'), 10) |
| elif boundary == 'wrap': |
| assert_array_almost_equal_nulp(z, np.array([9., 10., 5.], dtype='float'), 10) |
|
|
| @pytest.mark.parametrize(('boundary', 'nan_treatment', |
| 'normalize_kernel', 'preserve_nan', 'dtype'), |
| itertools.product(BOUNDARY_OPTIONS, |
| NANTREATMENT_OPTIONS, |
| NORMALIZE_OPTIONS, |
| PRESERVE_NAN_OPTIONS, |
| VALID_DTYPES)) |
| def test_input_unmodified(boundary, nan_treatment, |
| normalize_kernel, preserve_nan, dtype): |
| """ |
| Test that convolve_fft works correctly when inputs are lists |
| """ |
|
|
| array = [1., 4., 5., 6., 5., 7., 8.] |
| kernel = [0.2, 0.6, 0.2] |
| x = np.array(array, dtype=dtype) |
| y = np.array(kernel, dtype=dtype) |
|
|
| |
| x.flags.writeable = False |
| y.flags.writeable = False |
|
|
| z = convolve_fft(x, y, boundary=boundary, nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, preserve_nan=preserve_nan) |
|
|
| assert np.all(np.array(array, dtype=dtype) == x) |
| assert np.all(np.array(kernel, dtype=dtype) == y) |
|
|
| @pytest.mark.parametrize(('boundary', 'nan_treatment', |
| 'normalize_kernel', 'preserve_nan', 'dtype'), |
| itertools.product(BOUNDARY_OPTIONS, |
| NANTREATMENT_OPTIONS, |
| NORMALIZE_OPTIONS, |
| PRESERVE_NAN_OPTIONS, |
| VALID_DTYPES)) |
| def test_input_unmodified_with_nan(boundary, nan_treatment, |
| normalize_kernel, preserve_nan, dtype): |
| """ |
| Test that convolve_fft doesn't modify the input data |
| """ |
|
|
| array = [1., 4., 5., np.nan, 5., 7., 8.] |
| kernel = [0.2, 0.6, 0.2] |
| x = np.array(array, dtype=dtype) |
| y = np.array(kernel, dtype=dtype) |
|
|
| |
| x.flags.writeable = False |
| y.flags.writeable = False |
|
|
| |
| x_copy = x.copy() |
| y_copy = y.copy() |
|
|
| z = convolve_fft(x, y, boundary=boundary, nan_treatment=nan_treatment, |
| normalize_kernel=normalize_kernel, preserve_nan=preserve_nan) |
|
|
| |
| |
| |
| array_is_nan = np.isnan(array) |
| kernel_is_nan = np.isnan(kernel) |
| array_not_nan = ~array_is_nan |
| kernel_not_nan = ~kernel_is_nan |
| assert np.all(x_copy[array_not_nan] == x[array_not_nan]) |
| assert np.all(y_copy[kernel_not_nan] == y[kernel_not_nan]) |
| assert np.all(np.isnan(x[array_is_nan])) |
| assert np.all(np.isnan(y[kernel_is_nan])) |
|
|