| |
| |
|
|
|
|
| import operator |
|
|
| import pytest |
| import numpy as np |
|
|
| from astropy.tests.helper import assert_follows_unicode_guidelines, catch_warnings |
| from astropy import table |
| from astropy import units as u |
|
|
|
|
| class TestColumn(): |
|
|
| def test_subclass(self, Column): |
| c = Column(name='a') |
| assert isinstance(c, np.ndarray) |
| c2 = c * 2 |
| assert isinstance(c2, Column) |
| assert isinstance(c2, np.ndarray) |
|
|
| def test_numpy_ops(self, Column): |
| """Show that basic numpy operations with Column behave sensibly""" |
|
|
| arr = np.array([1, 2, 3]) |
| c = Column(arr, name='a') |
|
|
| for op, test_equal in ((operator.eq, True), |
| (operator.ne, False), |
| (operator.ge, True), |
| (operator.gt, False), |
| (operator.le, True), |
| (operator.lt, False)): |
| for eq in (op(c, arr), op(arr, c)): |
|
|
| assert np.all(eq) if test_equal else not np.any(eq) |
| assert len(eq) == 3 |
| if Column is table.Column: |
| assert type(eq) == np.ndarray |
| else: |
| assert type(eq) == np.ma.core.MaskedArray |
| assert eq.dtype.str == '|b1' |
|
|
| lt = c - 1 < arr |
| assert np.all(lt) |
|
|
| def test_numpy_boolean_ufuncs(self, Column): |
| """Show that basic numpy operations with Column behave sensibly""" |
|
|
| arr = np.array([1, 2, 3]) |
| c = Column(arr, name='a') |
|
|
| for ufunc, test_true in ((np.isfinite, True), |
| (np.isinf, False), |
| (np.isnan, False), |
| (np.sign, True), |
| (np.signbit, False)): |
| result = ufunc(c) |
| assert len(result) == len(c) |
| assert np.all(result) if test_true else not np.any(result) |
| if Column is table.Column: |
| assert type(result) == np.ndarray |
| else: |
| assert type(result) == np.ma.core.MaskedArray |
| if ufunc is not np.sign: |
| assert result.dtype.str == '|b1' |
|
|
| def test_view(self, Column): |
| c = np.array([1, 2, 3], dtype=np.int64).view(Column) |
| assert repr(c) == "<{0} dtype='int64' length=3>\n1\n2\n3".format(Column.__name__) |
|
|
| def test_format(self, Column): |
| """Show that the formatted output from str() works""" |
| from astropy import conf |
| with conf.set_temp('max_lines', 8): |
| c1 = Column(np.arange(2000), name='a', dtype=float, |
| format='%6.2f') |
| assert str(c1).splitlines() == [' a ', |
| '-------', |
| ' 0.00', |
| ' 1.00', |
| ' ...', |
| '1998.00', |
| '1999.00', |
| 'Length = 2000 rows'] |
|
|
| def test_convert_numpy_array(self, Column): |
| d = Column([1, 2, 3], name='a', dtype='i8') |
|
|
| np_data = np.array(d) |
| assert np.all(np_data == d) |
| np_data = np.array(d, copy=False) |
| assert np.all(np_data == d) |
| np_data = np.array(d, dtype='i4') |
| assert np.all(np_data == d) |
|
|
| def test_convert_unit(self, Column): |
| d = Column([1, 2, 3], name='a', dtype="f8", unit="m") |
| d.convert_unit_to("km") |
| assert np.all(d.data == [0.001, 0.002, 0.003]) |
|
|
| def test_array_wrap(self): |
| """Test that the __array_wrap__ method converts a reduction ufunc |
| output that has a different shape into an ndarray view. Without this a |
| method call like c.mean() returns a Column array object with length=1.""" |
| |
| c = table.Column(name='a', data=[1., 2., 3.]) |
| assert np.allclose(c.mean(), 2.0) |
| assert isinstance(c.mean(), (np.floating, float)) |
| assert np.allclose(c.sum(), 6.) |
| assert isinstance(c.sum(), (np.floating, float)) |
|
|
| |
| assert isinstance(np.cos(c), table.Column) |
|
|
| |
| c = table.Column(name='a', data=[1, 2, 3]) |
| assert np.allclose(c.sum(), 6) |
| assert isinstance(c.sum(), (np.integer, int)) |
|
|
| |
| c = table.Column(name='a', data=[[1, 2, 3], |
| [4, 5, 6]]) |
| assert c.sum() == 21 |
| assert isinstance(c.sum(), (np.integer, int)) |
| assert np.all(c.sum(axis=0) == [5, 7, 9]) |
| assert c.sum(axis=0).shape == (3,) |
| assert isinstance(c.sum(axis=0), np.ndarray) |
|
|
| |
| c = table.MaskedColumn(name='a', data=[1., 2., 3.], mask=[0, 0, 1]) |
| assert np.allclose(c.mean(), 1.5) |
| assert isinstance(c.mean(), (np.floating, float)) |
| assert np.allclose(c.sum(), 3.) |
| assert isinstance(c.sum(), (np.floating, float)) |
|
|
| def test_name_none(self, Column): |
| """Can create a column without supplying name, which defaults to None""" |
| c = Column([1, 2]) |
| assert c.name is None |
| assert np.all(c == np.array([1, 2])) |
|
|
| def test_quantity_init(self, Column): |
|
|
| c = Column(data=np.array([1, 2, 3]) * u.m) |
| assert np.all(c.data == np.array([1, 2, 3])) |
| assert np.all(c.unit == u.m) |
|
|
| c = Column(data=np.array([1, 2, 3]) * u.m, unit=u.cm) |
| assert np.all(c.data == np.array([100, 200, 300])) |
| assert np.all(c.unit == u.cm) |
|
|
| def test_attrs_survive_getitem_after_change(self, Column): |
| """ |
| Test for issue #3023: when calling getitem with a MaskedArray subclass |
| the original object attributes are not copied. |
| """ |
| c1 = Column([1, 2, 3], name='a', unit='m', format='%i', |
| description='aa', meta={'a': 1}) |
| c1.name = 'b' |
| c1.unit = 'km' |
| c1.format = '%d' |
| c1.description = 'bb' |
| c1.meta = {'bbb': 2} |
|
|
| for item in (slice(None, None), slice(None, 1), np.array([0, 2]), |
| np.array([False, True, False])): |
| c2 = c1[item] |
| assert c2.name == 'b' |
| assert c2.unit is u.km |
| assert c2.format == '%d' |
| assert c2.description == 'bb' |
| assert c2.meta == {'bbb': 2} |
|
|
| |
| |
| val = c1[1] |
| for attr in ('name', 'unit', 'format', 'description', 'meta'): |
| assert not hasattr(val, attr) |
|
|
| def test_to_quantity(self, Column): |
| d = Column([1, 2, 3], name='a', dtype="f8", unit="m") |
|
|
| assert np.all(d.quantity == ([1, 2, 3.] * u.m)) |
| assert np.all(d.quantity.value == ([1, 2, 3.] * u.m).value) |
| assert np.all(d.quantity == d.to('m')) |
| assert np.all(d.quantity.value == d.to('m').value) |
|
|
| np.testing.assert_allclose(d.to(u.km).value, ([.001, .002, .003] * u.km).value) |
| np.testing.assert_allclose(d.to('km').value, ([.001, .002, .003] * u.km).value) |
|
|
| np.testing.assert_allclose(d.to(u.MHz, u.equivalencies.spectral()).value, |
| [299.792458, 149.896229, 99.93081933]) |
|
|
| d_nounit = Column([1, 2, 3], name='a', dtype="f8", unit=None) |
| with pytest.raises(u.UnitsError): |
| d_nounit.to(u.km) |
| assert np.all(d_nounit.to(u.dimensionless_unscaled) == np.array([1, 2, 3])) |
|
|
| |
| q = [1, 3, 5]*u.km |
|
|
| |
| d.to(u.km)[:] = q |
| np.testing.assert_allclose(d, [1, 2, 3]) |
|
|
| |
| d.quantity.copy()[:] = q |
| np.testing.assert_allclose(d, [1, 2, 3]) |
|
|
| |
| d.quantity[:] = q |
| np.testing.assert_allclose(d, [1000, 3000, 5000]) |
|
|
| |
| d2 = Column([1, 2, 3], name='a', dtype=int, unit="m") |
| d2.quantity[:] = q |
| np.testing.assert_allclose(d2, [1000, 3000, 5000]) |
|
|
| |
| d3 = Column(['arg', 'name', 'stuff'], name='a', unit="m") |
| with pytest.raises(TypeError): |
| d3.quantity |
|
|
| def test_to_funcunit_quantity(self, Column): |
| """ |
| Tests for #8424, check if function-unit can be retrieved from column. |
| """ |
| d = Column([1, 2, 3], name='a', dtype="f8", unit="dex(AA)") |
|
|
| assert np.all(d.quantity == ([1, 2, 3] * u.dex(u.AA))) |
| assert np.all(d.quantity.value == ([1, 2, 3] * u.dex(u.AA)).value) |
| assert np.all(d.quantity == d.to("dex(AA)")) |
| assert np.all(d.quantity.value == d.to("dex(AA)").value) |
|
|
| |
| q = [10, 100, 1000] * u.AA |
| np.testing.assert_allclose(d.to(u.AA), q) |
|
|
| def test_item_access_type(self, Column): |
| """ |
| Tests for #3095, which forces integer item access to always return a plain |
| ndarray or MaskedArray, even in the case of a multi-dim column. |
| """ |
| integer_types = (int, np.int_) |
|
|
| for int_type in integer_types: |
| c = Column([[1, 2], [3, 4]]) |
| i0 = int_type(0) |
| i1 = int_type(1) |
| assert np.all(c[i0] == [1, 2]) |
| assert type(c[i0]) == (np.ma.MaskedArray if hasattr(Column, 'mask') else np.ndarray) |
| assert c[i0].shape == (2,) |
|
|
| c01 = c[i0:i1] |
| assert np.all(c01 == [[1, 2]]) |
| assert isinstance(c01, Column) |
| assert c01.shape == (1, 2) |
|
|
| c = Column([1, 2]) |
| assert np.all(c[i0] == 1) |
| assert isinstance(c[i0], np.integer) |
| assert c[i0].shape == () |
|
|
| c01 = c[i0:i1] |
| assert np.all(c01 == [1]) |
| assert isinstance(c01, Column) |
| assert c01.shape == (1,) |
|
|
| def test_insert_basic(self, Column): |
| c = Column([0, 1, 2], name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
|
|
| |
| c1 = c.insert(1, 100) |
| assert np.all(c1 == [0, 100, 1, 2]) |
| assert c1.attrs_equal(c) |
| assert type(c) is type(c1) |
| if hasattr(c1, 'mask'): |
| assert c1.data.shape == c1.mask.shape |
|
|
| c1 = c.insert(-1, 100) |
| assert np.all(c1 == [0, 1, 100, 2]) |
|
|
| c1 = c.insert(3, 100) |
| assert np.all(c1 == [0, 1, 2, 100]) |
|
|
| c1 = c.insert(-3, 100) |
| assert np.all(c1 == [100, 0, 1, 2]) |
|
|
| c1 = c.insert(1, [100, 200, 300]) |
| if hasattr(c1, 'mask'): |
| assert c1.data.shape == c1.mask.shape |
|
|
| |
| with pytest.raises((ValueError, IndexError)): |
| c1 = c.insert(-4, 100) |
| with pytest.raises((ValueError, IndexError)): |
| c1 = c.insert(4, 100) |
|
|
| def test_insert_axis(self, Column): |
| """Insert with non-default axis kwarg""" |
| c = Column([[1, 2], [3, 4]]) |
|
|
| c1 = c.insert(1, [5, 6], axis=None) |
| assert np.all(c1 == [1, 5, 6, 2, 3, 4]) |
|
|
| c1 = c.insert(1, [5, 6], axis=1) |
| assert np.all(c1 == [[1, 5, 2], [3, 6, 4]]) |
|
|
| def test_insert_multidim(self, Column): |
| c = Column([[1, 2], |
| [3, 4]], name='a', dtype=int) |
|
|
| |
| c1 = c.insert(1, [100, 200]) |
| assert np.all(c1 == [[1, 2], [100, 200], [3, 4]]) |
|
|
| |
| c1 = c.insert(1, 100) |
| assert np.all(c1 == [[1, 2], [100, 100], [3, 4]]) |
|
|
| |
| with pytest.raises(ValueError): |
| c1 = c.insert(1, [100, 200, 300]) |
|
|
| def test_insert_object(self, Column): |
| c = Column(['a', 1, None], name='a', dtype=object) |
|
|
| |
| c1 = c.insert(1, [100, 200]) |
| assert np.all(c1 == ['a', [100, 200], 1, None]) |
|
|
| def test_insert_masked(self): |
| c = table.MaskedColumn([0, 1, 2], name='a', fill_value=9999, |
| mask=[False, True, False]) |
|
|
| |
| c1 = c.insert(1, 100) |
| assert np.all(c1.data.data == [0, 100, 1, 2]) |
| assert c1.fill_value == 9999 |
| assert np.all(c1.data.mask == [False, False, True, False]) |
| assert type(c) is type(c1) |
|
|
| for mask in (False, True): |
| c1 = c.insert(1, 100, mask=mask) |
| assert np.all(c1.data.data == [0, 100, 1, 2]) |
| assert np.all(c1.data.mask == [False, mask, True, False]) |
|
|
| def test_masked_multidim_as_list(self): |
| data = np.ma.MaskedArray([1, 2], mask=[True, False]) |
| c = table.MaskedColumn([data]) |
| assert c.shape == (1, 2) |
| assert np.all(c[0].mask == [True, False]) |
|
|
| def test_insert_masked_multidim(self): |
| c = table.MaskedColumn([[1, 2], |
| [3, 4]], name='a', dtype=int) |
|
|
| c1 = c.insert(1, [100, 200], mask=True) |
| assert np.all(c1.data.data == [[1, 2], [100, 200], [3, 4]]) |
| assert np.all(c1.data.mask == [[False, False], [True, True], [False, False]]) |
|
|
| c1 = c.insert(1, [100, 200], mask=[True, False]) |
| assert np.all(c1.data.data == [[1, 2], [100, 200], [3, 4]]) |
| assert np.all(c1.data.mask == [[False, False], [True, False], [False, False]]) |
|
|
| with pytest.raises(ValueError): |
| c1 = c.insert(1, [100, 200], mask=[True, False, True]) |
|
|
| def test_mask_on_non_masked_table(self): |
| """ |
| When table is not masked and trying to set mask on column then |
| it's Raise AttributeError. |
| """ |
|
|
| t = table.Table([[1, 2], [3, 4]], names=('a', 'b'), dtype=('i4', 'f8')) |
|
|
| with pytest.raises(AttributeError): |
| t['a'].mask = [True, False] |
|
|
|
|
| class TestAttrEqual(): |
| """Bunch of tests originally from ATpy that test the attrs_equal method.""" |
|
|
| def test_5(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy') |
| c2 = Column(name='a', dtype=int, unit='mJy') |
| assert c1.attrs_equal(c2) |
|
|
| def test_6(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| assert c1.attrs_equal(c2) |
|
|
| def test_7(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = Column(name='b', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| assert not c1.attrs_equal(c2) |
|
|
| def test_8(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = Column(name='a', dtype=float, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| assert not c1.attrs_equal(c2) |
|
|
| def test_9(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = Column(name='a', dtype=int, unit='erg.cm-2.s-1.Hz-1', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| assert not c1.attrs_equal(c2) |
|
|
| def test_10(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = Column(name='a', dtype=int, unit='mJy', format='%g', |
| description='test column', meta={'c': 8, 'd': 12}) |
| assert not c1.attrs_equal(c2) |
|
|
| def test_11(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='another test column', meta={'c': 8, 'd': 12}) |
| assert not c1.attrs_equal(c2) |
|
|
| def test_12(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'e': 8, 'd': 12}) |
| assert not c1.attrs_equal(c2) |
|
|
| def test_13(self, Column): |
| c1 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 9, 'd': 12}) |
| assert not c1.attrs_equal(c2) |
|
|
| def test_col_and_masked_col(self): |
| c1 = table.Column(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| c2 = table.MaskedColumn(name='a', dtype=int, unit='mJy', format='%i', |
| description='test column', meta={'c': 8, 'd': 12}) |
| assert c1.attrs_equal(c2) |
| assert c2.attrs_equal(c1) |
|
|
| |
| |
| |
|
|
|
|
| from astropy.utils.tests.test_metadata import MetaBaseTest |
|
|
|
|
| class TestMetaColumn(MetaBaseTest): |
| test_class = table.Column |
| args = () |
|
|
|
|
| class TestMetaMaskedColumn(MetaBaseTest): |
| test_class = table.MaskedColumn |
| args = () |
|
|
|
|
| def test_getitem_metadata_regression(): |
| """ |
| Regression test for #1471: MaskedArray does not call __array_finalize__ so |
| the meta-data was not getting copied over. By overloading _update_from we |
| are able to work around this bug. |
| """ |
|
|
| |
|
|
| c = table.Column(data=[1, 2], name='a', description='b', unit='m', format="%i", meta={'c': 8}) |
| assert c[1:2].name == 'a' |
| assert c[1:2].description == 'b' |
| assert c[1:2].unit == 'm' |
| assert c[1:2].format == '%i' |
| assert c[1:2].meta['c'] == 8 |
|
|
| c = table.MaskedColumn(data=[1, 2], name='a', description='b', unit='m', format="%i", meta={'c': 8}) |
| assert c[1:2].name == 'a' |
| assert c[1:2].description == 'b' |
| assert c[1:2].unit == 'm' |
| assert c[1:2].format == '%i' |
| assert c[1:2].meta['c'] == 8 |
|
|
| |
|
|
| c = table.Column(data=[1, 2, 3], name='a', description='b', unit='m', format="%i", meta={'c': 8}) |
| for subset in [c.take([0, 1]), np.take(c, [0, 1])]: |
| assert subset.name == 'a' |
| assert subset.description == 'b' |
| assert subset.unit == 'm' |
| assert subset.format == '%i' |
| assert subset.meta['c'] == 8 |
|
|
| |
| for subset in [c.take(0), np.take(c, 0)]: |
| assert subset == 1 |
| assert subset.shape == () |
| assert not isinstance(subset, table.Column) |
|
|
| c = table.MaskedColumn(data=[1, 2, 3], name='a', description='b', unit='m', format="%i", meta={'c': 8}) |
| for subset in [c.take([0, 1]), np.take(c, [0, 1])]: |
| assert subset.name == 'a' |
| assert subset.description == 'b' |
| assert subset.unit == 'm' |
| assert subset.format == '%i' |
| assert subset.meta['c'] == 8 |
|
|
| |
| for subset in [c.take(0), np.take(c, 0)]: |
| assert subset == 1 |
| assert subset.shape == () |
| assert not isinstance(subset, table.MaskedColumn) |
|
|
|
|
| def test_unicode_guidelines(): |
| arr = np.array([1, 2, 3]) |
| c = table.Column(arr, name='a') |
|
|
| assert_follows_unicode_guidelines(c) |
|
|
|
|
| def test_scalar_column(): |
| """ |
| Column is not designed to hold scalars, but for numpy 1.6 this can happen: |
| |
| >> type(np.std(table.Column([1, 2]))) |
| astropy.table.column.Column |
| """ |
| c = table.Column(1.5) |
| assert repr(c) == '1.5' |
| assert str(c) == '1.5' |
|
|
|
|
| def test_qtable_column_conversion(): |
| """ |
| Ensures that a QTable that gets assigned a unit switches to be Quantity-y |
| """ |
| qtab = table.QTable([[1, 2], [3, 4.2]], names=['i', 'f']) |
|
|
| assert isinstance(qtab['i'], table.column.Column) |
| assert isinstance(qtab['f'], table.column.Column) |
|
|
| qtab['i'].unit = 'km/s' |
| assert isinstance(qtab['i'], u.Quantity) |
| assert isinstance(qtab['f'], table.column.Column) |
|
|
| |
| assert isinstance(qtab['i'][0], u.Quantity) |
| assert isinstance(qtab[0]['i'], u.Quantity) |
| assert not isinstance(qtab['f'][0], u.Quantity) |
| assert not isinstance(qtab[0]['f'], u.Quantity) |
|
|
| |
| |
| qtab['f'].unit = u.dex(u.cm/u.s**2) |
| assert isinstance(qtab['f'], u.Dex) |
|
|
|
|
| @pytest.mark.parametrize('masked', [True, False]) |
| def test_string_truncation_warning(masked): |
| """ |
| Test warnings associated with in-place assignment to a string |
| column that results in truncation of the right hand side. |
| """ |
| t = table.Table([['aa', 'bb']], names=['a'], masked=masked) |
|
|
| with catch_warnings() as w: |
| from inspect import currentframe, getframeinfo |
| t['a'][1] = 'cc' |
| assert len(w) == 0 |
|
|
| t['a'][:] = 'dd' |
| assert len(w) == 0 |
|
|
| with catch_warnings() as w: |
| frameinfo = getframeinfo(currentframe()) |
| t['a'][0] = 'eee' |
| assert t['a'][0] == 'ee' |
| assert len(w) == 1 |
| assert ('truncated right side string(s) longer than 2 character(s)' |
| in str(w[0].message)) |
|
|
| |
| assert w[0].lineno == frameinfo.lineno + 1 |
| assert w[0].category is table.StringTruncateWarning |
| assert 'test_column' in w[0].filename |
|
|
| with catch_warnings() as w: |
| t['a'][:] = ['ff', 'ggg'] |
| assert np.all(t['a'] == ['ff', 'gg']) |
| assert len(w) == 1 |
| assert ('truncated right side string(s) longer than 2 character(s)' |
| in str(w[0].message)) |
|
|
| with catch_warnings() as w: |
| |
| |
| |
| val = np.array(['ffff', 'gggg']) |
| val[:] = ['f', 'g'] |
| t['a'][:] = val |
| assert np.all(t['a'] == ['f', 'g']) |
| assert len(w) == 0 |
|
|
|
|
| def test_string_truncation_warning_masked(): |
| """ |
| Test warnings associated with in-place assignment to a string |
| to a masked column, specifically where the right hand side |
| contains np.ma.masked. |
| """ |
|
|
| |
| |
| |
| |
| |
| for values in (['a', 'b'], [1, 2], [1.0, 2.0]): |
| mc = table.MaskedColumn(values) |
|
|
| with catch_warnings() as w: |
| mc[1] = np.ma.masked |
| assert len(w) == 0 |
| assert np.all(mc.mask == [False, True]) |
|
|
| mc[:] = np.ma.masked |
| assert len(w) == 0 |
| assert np.all(mc.mask == [True, True]) |
|
|
| mc = table.MaskedColumn(['aa', 'bb']) |
|
|
| with catch_warnings() as w: |
| mc[:] = [np.ma.masked, 'ggg'] |
| assert mc[1] == 'gg' |
| assert np.all(mc.mask == [True, False]) |
| assert len(w) == 1 |
| assert ('truncated right side string(s) longer than 2 character(s)' |
| in str(w[0].message)) |
|
|
|
|
| @pytest.mark.parametrize('Column', (table.Column, table.MaskedColumn)) |
| def test_col_unicode_sandwich_create_from_str(Column): |
| """ |
| Create a bytestring Column from strings (including unicode) in Py3. |
| """ |
| |
| |
| uba = u'bä' |
| c = Column([uba, 'def'], dtype='S') |
| assert c.dtype.char == 'S' |
| assert c[0] == uba |
| assert isinstance(c[0], str) |
| assert isinstance(c[:0], table.Column) |
| assert np.all(c[:2] == np.array([uba, 'def'])) |
|
|
|
|
| @pytest.mark.parametrize('Column', (table.Column, table.MaskedColumn)) |
| def test_col_unicode_sandwich_bytes(Column): |
| """ |
| Create a bytestring Column from bytes and ensure that it works in Python 3 in |
| a convenient way like in Python 2. |
| """ |
| |
| |
| uba = u'bä' |
| uba8 = uba.encode('utf-8') |
| c = Column([uba8, b'def']) |
| assert c.dtype.char == 'S' |
| assert c[0] == uba |
| assert isinstance(c[0], str) |
| assert isinstance(c[:0], table.Column) |
| assert np.all(c[:2] == np.array([uba, 'def'])) |
|
|
| assert isinstance(c[:], table.Column) |
| assert c[:].dtype.char == 'S' |
|
|
| |
| assert np.all(c == [uba, 'def']) |
|
|
| ok = c == [uba8, b'def'] |
| assert type(ok) is type(c.data) |
| assert ok.dtype.char == '?' |
| assert np.all(ok) |
|
|
| assert np.all(c == np.array([uba, u'def'])) |
| assert np.all(c == np.array([uba8, b'def'])) |
|
|
| |
| cmps = (uba, uba8) |
| for cmp in cmps: |
| ok = c == cmp |
| assert type(ok) is type(c.data) |
| assert np.all(ok == [True, False]) |
|
|
|
|
| def test_col_unicode_sandwich_unicode(): |
| """ |
| Sanity check that Unicode Column behaves normally. |
| """ |
| |
| uba = u'bä' |
| uba8 = uba.encode('utf-8') |
|
|
| c = table.Column([uba, 'def'], dtype='U') |
| assert c[0] == uba |
| assert isinstance(c[:0], table.Column) |
| assert isinstance(c[0], str) |
| assert np.all(c[:2] == np.array([uba, 'def'])) |
|
|
| assert isinstance(c[:], table.Column) |
| assert c[:].dtype.char == 'U' |
|
|
| ok = c == [uba, 'def'] |
| assert type(ok) == np.ndarray |
| assert ok.dtype.char == '?' |
| assert np.all(ok) |
|
|
| assert np.all(c != [uba8, b'def']) |
|
|
|
|
| def test_masked_col_unicode_sandwich(): |
| """ |
| Create a bytestring MaskedColumn and ensure that it works in Python 3 in |
| a convenient way like in Python 2. |
| """ |
| c = table.MaskedColumn([b'abc', b'def']) |
| c[1] = np.ma.masked |
| assert isinstance(c[:0], table.MaskedColumn) |
| assert isinstance(c[0], str) |
|
|
| assert c[0] == 'abc' |
| assert c[1] is np.ma.masked |
|
|
| assert isinstance(c[:], table.MaskedColumn) |
| assert c[:].dtype.char == 'S' |
|
|
| ok = c == ['abc', 'def'] |
| assert ok[0] == True |
| assert ok[1] is np.ma.masked |
| assert np.all(c == [b'abc', b'def']) |
| assert np.all(c == np.array([u'abc', u'def'])) |
| assert np.all(c == np.array([b'abc', b'def'])) |
|
|
| for cmp in (u'abc', b'abc'): |
| ok = c == cmp |
| assert type(ok) is np.ma.MaskedArray |
| assert ok[0] == True |
| assert ok[1] is np.ma.masked |
|
|
|
|
| @pytest.mark.parametrize('Column', (table.Column, table.MaskedColumn)) |
| def test_unicode_sandwich_set(Column): |
| """ |
| Test setting |
| """ |
| uba = u'bä' |
|
|
| c = Column([b'abc', b'def']) |
|
|
| c[0] = b'aa' |
| assert np.all(c == [u'aa', u'def']) |
|
|
| c[0] = uba |
| assert np.all(c == [uba, u'def']) |
| assert c.pformat() == [u'None', u'----', ' ' + uba, u' def'] |
|
|
| c[:] = b'cc' |
| assert np.all(c == [u'cc', u'cc']) |
|
|
| c[:] = uba |
| assert np.all(c == [uba, uba]) |
|
|
| c[:] = '' |
| c[:] = [uba, b'def'] |
| assert np.all(c == [uba, b'def']) |
|
|
|
|
| @pytest.mark.parametrize('class1', [table.MaskedColumn, table.Column]) |
| @pytest.mark.parametrize('class2', [table.MaskedColumn, table.Column, str, list]) |
| def test_unicode_sandwich_compare(class1, class2): |
| """Test that comparing a bytestring Column/MaskedColumn with various |
| str (unicode) object types gives the expected result. Tests #6838. |
| """ |
| obj1 = class1([b'a', b'c']) |
| if class2 is str: |
| obj2 = 'a' |
| elif class2 is list: |
| obj2 = ['a', 'b'] |
| else: |
| obj2 = class2(['a', 'b']) |
|
|
| assert np.all((obj1 == obj2) == [True, False]) |
| assert np.all((obj2 == obj1) == [True, False]) |
|
|
| assert np.all((obj1 != obj2) == [False, True]) |
| assert np.all((obj2 != obj1) == [False, True]) |
|
|
| assert np.all((obj1 > obj2) == [False, True]) |
| assert np.all((obj2 > obj1) == [False, False]) |
|
|
| assert np.all((obj1 <= obj2) == [True, False]) |
| assert np.all((obj2 <= obj1) == [True, True]) |
|
|
| assert np.all((obj1 < obj2) == [False, False]) |
| assert np.all((obj2 < obj1) == [False, True]) |
|
|
| assert np.all((obj1 >= obj2) == [True, True]) |
| assert np.all((obj2 >= obj1) == [True, False]) |
|
|
|
|
| def test_unicode_sandwich_masked_compare(): |
| """Test the fix for #6839 from #6899.""" |
| c1 = table.MaskedColumn(['a', 'b', 'c', 'd'], |
| mask=[True, False, True, False]) |
| c2 = table.MaskedColumn([b'a', b'b', b'c', b'd'], |
| mask=[True, True, False, False]) |
|
|
| for cmp in ((c1 == c2), (c2 == c1)): |
| assert cmp[0] is np.ma.masked |
| assert cmp[1] is np.ma.masked |
| assert cmp[2] is np.ma.masked |
| assert cmp[3] |
|
|
| for cmp in ((c1 != c2), (c2 != c1)): |
| assert cmp[0] is np.ma.masked |
| assert cmp[1] is np.ma.masked |
| assert cmp[2] is np.ma.masked |
| assert not cmp[3] |
|
|
| |
| |
|
|