| .. note that if this is changed from the default approach of using an *include* |
| (in index.rst) to a separate performance page, the header needs to be changed |
| from === to ***, the filename extension needs to be changed from .inc.rst to |
| .rst, and a link needs to be added in the subpackage toctree |
|
|
| .. _astropy-units-performance: |
|
|
| Performance Tips |
| ================ |
|
|
| If you are attaching units to arrays to make |Quantity| objects, multiplying |
| arrays by units will result in the array being copied in memory, which will slow |
| things down. Furthermore, if you are multiplying an array by a composite unit, |
| the array will be copied for each individual multiplication - thus, in the following |
| case, the array is copied four successive times:: |
|
|
| In [1]: array = np.random.random(10000000) |
|
|
| In [2]: %timeit array * u.m / u.s / u.kg / u.sr |
| 92.5 ms ± 2.52 ms per loop (mean ± std. dev. of 7 runs, 10 loops each) |
|
|
| There are several ways to speed this up. First, when you are using composite |
| units, you should make sure that the entire unit gets evaluated first, then |
| attached to the array. You can do this by using parentheses as for any other |
| operation:: |
|
|
| In [3]: %timeit array * (u.m / u.s / u.kg / u.sr) |
| 21.5 ms ± 886 µs per loop (mean ± std. dev. of 7 runs, 10 loops each) |
|
|
| In this case, this has sped things up by a factor of 4x. If you |
| use a composite unit several times in your code, another approach is to create a |
| constant at the top of your code for this unit and use it subsequently:: |
|
|
| In [4]: UNIT_MSKGSR = u.m / u.s / u.kg / u.sr |
|
|
| In [5]: %timeit array * UNIT_MSKGSR |
| 22.2 ms ± 551 µs per loop (mean ± std. dev. of 7 runs, 10 loops each) |
|
|
| In this case and the case with brackets, the array is still copied once when |
| creating the |Quantity|. If you want to avoid any copies altogether, you can |
| make use of the ``<<`` operator to attach the unit to the array:: |
|
|
| In [6]: %timeit array << u.m / u.s / u.kg / u.sr |
| 47.1 µs ± 5.77 µs per loop (mean ± std. dev. of 7 runs, 10000 loops each) |
|
|
| Note that these are now **microseconds**, so this is 2000x faster than the |
| original case with no brackets. Note that brackets are not needed when using |
| ``<<`` since ``*`` and ``/`` have a higher precedence, so the unit will be |
| evaluated first. When using ``<<``, be aware that because the data is not being |
| copied, changing the original array will also change the |Quantity| object. |
|
|
| Note that for composite units, you will definitely see an |
| impact if you can pre-compute the composite unit:: |
|
|
| In [7]: %timeit array << UNIT_MSKGSR |
| 6.51 µs ± 112 ns per loop (mean ± std. dev. of 7 runs, 100000 loops each) |
|
|
| Which is over 10000x faster than the original example. See |
| :ref:`astropy-units-quantity-no-copy` for more details about the ``<<`` |
| operator. |
|
|