# Copyright 2020 MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. import torch.nn as nn from monai.networks.blocks.convolutions import Convolution from monai.networks.blocks.upsample import UpSample from monai.networks.layers.factories import Act, Norm def get_norm_layer(spatial_dims: int, in_channels: int, norm_name: str, num_groups: int = 8): if norm_name not in ["batch", "instance", "group"]: raise ValueError(f"Unsupported normalization mode: {norm_name}") else: if norm_name == "group": norm = Norm[norm_name](num_groups=num_groups, num_channels=in_channels) else: norm = Norm[norm_name, spatial_dims](in_channels) if norm.bias is not None: nn.init.zeros_(norm.bias) if norm.weight is not None: nn.init.ones_(norm.weight) return norm def get_conv_layer( spatial_dims: int, in_channels: int, out_channels: int, kernel_size: int = 3, stride: int = 1, bias: bool = False ): return Convolution( spatial_dims, in_channels, out_channels, strides=stride, kernel_size=kernel_size, bias=bias, conv_only=True, ) def get_upsample_layer(spatial_dims: int, in_channels: int, upsample_mode: str = "trilinear", scale_factor: int = 2): up_module: nn.Module if upsample_mode == "transpose": up_module = UpSample( spatial_dims, in_channels, scale_factor=scale_factor, with_conv=True, ) else: upsample_mode = "bilinear" if spatial_dims == 2 else "trilinear" up_module = nn.Upsample(scale_factor=scale_factor, mode=upsample_mode, align_corners=False) return up_module class ResBlock(nn.Module): """ ResBlock employs skip connection and two convolution blocks and is used in SegResNet based on `3D MRI brain tumor segmentation using autoencoder regularization `_. """ def __init__( self, spatial_dims: int, in_channels: int, kernel_size: int = 3, stride: int = 1, bias: bool = False, norm_name: str = "group", num_groups: int = 8, ) -> None: """ Args: spatial_dims: number of spatial dimensions, could be 1, 2 or 3. in_channels: number of input channels. kernel_size: convolution kernel size, the value should be an odd number. Defaults to 3. stride: convolution stride. Defaults to 1. bias: whether to have a bias term in convolution layer. Defaults to ``True``. norm_name: feature normalization type, this module only supports group norm, batch norm and instance norm. Defaults to ``group``. num_groups: number of groups to separate the channels into, in this module, in_channels should be divisible by num_groups. Defaults to 8. """ super().__init__() assert kernel_size % 2 == 1, "kernel_size should be an odd number." assert in_channels % num_groups == 0, "in_channels should be divisible by num_groups." self.norm1 = get_norm_layer(spatial_dims, in_channels, norm_name, num_groups=num_groups) self.norm2 = get_norm_layer(spatial_dims, in_channels, norm_name, num_groups=num_groups) self.relu = Act[Act.RELU](inplace=True) self.conv1 = get_conv_layer(spatial_dims, in_channels, in_channels) self.conv2 = get_conv_layer(spatial_dims, in_channels, in_channels) def forward(self, x): identity = x x = self.norm1(x) x = self.relu(x) x = self.conv1(x) x = self.norm2(x) x = self.relu(x) x = self.conv2(x) x += identity return x