# Copyright 2020 MONAI Consortium # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # http://www.apache.org/licenses/LICENSE-2.0 # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from typing import Sequence, Tuple, Union import numpy as np __all__ = ["same_padding", "calculate_out_shape", "gaussian_1d"] def same_padding( kernel_size: Union[Sequence[int], int], dilation: Union[Sequence[int], int] = 1 ) -> Union[Tuple[int, ...], int]: """ Return the padding value needed to ensure a convolution using the given kernel size produces an output of the same shape as the input for a stride of 1, otherwise ensure a shape of the input divided by the stride rounded down. Raises: NotImplementedError: When ``np.any((kernel_size - 1) * dilation % 2 == 1)``. """ kernel_size_np = np.atleast_1d(kernel_size) dilation_np = np.atleast_1d(dilation) if np.any((kernel_size_np - 1) * dilation % 2 == 1): raise NotImplementedError( f"Same padding not available for kernel_size={kernel_size_np} and dilation={dilation_np}." ) padding_np = (kernel_size_np - 1) / 2 * dilation_np padding = tuple(int(p) for p in padding_np) return padding if len(padding) > 1 else padding[0] def calculate_out_shape( in_shape: Union[Sequence[int], int], kernel_size: Union[Sequence[int], int], stride: Union[Sequence[int], int], padding: Union[Sequence[int], int], ) -> Union[Tuple[int, ...], int]: """ Calculate the output tensor shape when applying a convolution to a tensor of shape `inShape` with kernel size `kernel_size`, stride value `stride`, and input padding value `padding`. All arguments can be scalars or multiple values, return value is a scalar if all inputs are scalars. """ in_shape_np = np.atleast_1d(in_shape) kernel_size_np = np.atleast_1d(kernel_size) stride_np = np.atleast_1d(stride) padding_np = np.atleast_1d(padding) out_shape_np = ((in_shape_np - kernel_size_np + padding_np + padding_np) // stride_np) + 1 out_shape = tuple(int(s) for s in out_shape_np) return out_shape if len(out_shape) > 1 else out_shape[0] def gaussian_1d(sigma: float, truncated: float = 4.0) -> np.ndarray: """ one dimensional gaussian kernel. Args: sigma: std of the kernel truncated: tail length Raises: ValueError: When ``sigma`` is nonpositive. Returns: 1D numpy array """ if sigma <= 0: raise ValueError(f"sigma must be positive, got {sigma}.") tail = int(sigma * truncated + 0.5) sigma2 = sigma * sigma x = np.arange(-tail, tail + 1) out = np.exp(-0.5 / sigma2 * x ** 2) out /= out.sum() return out