# multirange_indexing.py # # LICENSE # # The MIT License # # Copyright (c) 2020 TileDB, Inc. # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. # # DESCRIPTION # # Please see the TileDB documentation for more information: # https://docs.tiledb.com/main/how-to/arrays/reading-arrays/multi-range-subarrays # # When run, this program will create a simple 2D dense array with two # attributes, write some data to it, and read a slice of the data back on # (i) both attributes, and (ii) subselecting on only one of the attributes. # import numpy as np import tiledb # Name of the array to create. array_name = "multi_range" def create_array(): # Check if the array already exists. if tiledb.object_type(array_name) == "array": return dom = tiledb.Domain( tiledb.Dim(name="x", domain=(1, 20), tile=4, dtype=np.int64), tiledb.Dim(name="y", domain=(1, 20), tile=4, dtype=np.int64), ) # Add a single "a" float attribute schema = tiledb.ArraySchema( domain=dom, sparse=False, attrs=[tiledb.Attr(name="a", dtype=np.float64)] ) # Create the (empty) array on disk. tiledb.DenseArray.create(array_name, schema) def write_array(): # Open the array and write to it. with tiledb.DenseArray(array_name, mode="w") as A: data_a = np.arange(400).reshape(20, 20) A[:, :] = {"a": data_a} def read_array(): # Open the array and read from it. with tiledb.DenseArray(array_name, mode="r") as A: # Slice only rows: (1,3) inclusive, and 5 # cols: 2, 5, 7 data = A.multi_index[[(1, 3), 5], [2, 5, 7]] print("Reading attribute 'a', [ [1:3, 5], [2,5,7] ]") a = data["a"] print(a) create_array() write_array() read_array()