# string_dimension_label.py # # LICENSE # # The MIT License # # Copyright (c) 2023 TileDB, Inc. # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. # # DESCRIPTION # # Please refer to the TileDB and TileDB-Py documentation for more information: # https://docs.tiledb.com/main/how-to # https://tiledb-inc-tiledb.readthedocs-hosted.com/projects/tiledb-py/en/stable/python-api.html # # When run, this program will create a simple 2D dense array with a string dimension # dimension on the column dimension, and read a slice back with the dimension label. # import numpy as np import tiledb def create_array(uri: str): """Create array schema with a dimension label on the columns""" dim1 = tiledb.Dim("row", domain=(1, 5)) dim2 = tiledb.Dim("column", domain=(1, 5)) dom = tiledb.Domain(dim1, dim2) att = tiledb.Attr("a1", dtype=np.int64) dim_labels = {1: {"name": dim2.create_label_schema("increasing", "ascii")}} schema = tiledb.ArraySchema(domain=dom, attrs=(att,), dim_labels=dim_labels) tiledb.Array.create(uri, schema) def write_array(uri: str): """Write attribute and label data to the array""" a1_data = np.reshape(np.arange(1, 26), (5, 5)) label_data = np.array(["alpha", "beta", "gamma", "kappa", "omega"]) with tiledb.open(uri, "w") as array: array[:, :] = {"a1": a1_data, "name": label_data} def read_array(uri: str): """Read the array from the dimension label""" with tiledb.open(uri, "r") as array: data = array.label_index(["name"])[1, "beta":"kappa"] print( "Reading array on [[1, 'beta':'kappa']] with label 'name' on dimension 'col'" ) for name, value in data.items(): print(f" '{name}'={value}") if __name__ == "__main__": # Name of the array to create. ARRAY_NAME = "string_dimension_labels" LIBVERSION = tiledb.libtiledb.version() if LIBVERSION[0] == 2 and LIBVERSION[1] < 15: print( f"Dimension labels requires libtiledb version >= 2.15.0. Current version is" f" {LIBVERSION[0]}.{LIBVERSION[1]}.{LIBVERSION[2]}" ) else: # Only create and write to the array if it doesn't already exist. if tiledb.object_type(ARRAY_NAME) != "array": create_array(ARRAY_NAME) write_array(ARRAY_NAME) # Read from the array and print output. read_array(ARRAY_NAME)