#!python #cython: language_level=3 from libc.stdint cimport uint32_t, uint64_t from libc.stdio cimport FILE from .domain_indexer import DomainIndexer include "common.pxi" cdef extern from "Python.h": char* PyUnicode_AsUTF8(object unicode) cdef extern from "tiledb/tiledb.h": # Constants enum: TILEDB_OK enum: TILEDB_ERR enum: TILEDB_OOM enum: TILEDB_VAR_NUM unsigned int tiledb_var_num() enum: TILEDB_MAX_PATH unsigned int tiledb_max_path() enum: TILEDB_OFFSET_SIZE unsigned int tiledb_offset_size() # Version void tiledb_version(int* major, int* minor, int* rev) # Enums ctypedef enum tiledb_object_t: TILEDB_INVALID TILEDB_GROUP TILEDB_ARRAY ctypedef enum tiledb_query_type_t: TILEDB_MODIFY_EXCLUSIVE TILEDB_DELETE TILEDB_READ TILEDB_WRITE ctypedef enum tiledb_query_status_t: TILEDB_FAILED TILEDB_COMPLETED TILEDB_INPROGRESS TILEDB_INCOMPLETE ctypedef enum tiledb_datatype_t: TILEDB_INT32 TILEDB_INT64 TILEDB_FLOAT32 TILEDB_FLOAT64 TILEDB_BLOB TILEDB_GEOM_WKB TILEDB_GEOM_WKT TILEDB_CHAR TILEDB_INT8 TILEDB_UINT8 TILEDB_INT16 TILEDB_UINT16 TILEDB_UINT32 TILEDB_UINT64 TILEDB_STRING_ASCII TILEDB_STRING_UTF8 TILEDB_STRING_UTF16 TILEDB_STRING_UTF32 TILEDB_STRING_UCS2 TILEDB_STRING_UCS4 TILEDB_DATETIME_YEAR TILEDB_DATETIME_MONTH TILEDB_DATETIME_WEEK TILEDB_DATETIME_DAY TILEDB_DATETIME_HR TILEDB_DATETIME_MIN TILEDB_DATETIME_SEC TILEDB_DATETIME_MS TILEDB_DATETIME_US TILEDB_DATETIME_NS TILEDB_DATETIME_PS TILEDB_DATETIME_FS TILEDB_DATETIME_AS TILEDB_BOOL ctypedef enum tiledb_array_type_t: TILEDB_DENSE TILEDB_SPARSE ctypedef enum tiledb_layout_t: TILEDB_ROW_MAJOR TILEDB_COL_MAJOR TILEDB_GLOBAL_ORDER TILEDB_UNORDERED TILEDB_HILBERT ctypedef enum tiledb_data_order_t: TILEDB_UNORDERED_DATA TILEDB_INCREASING_DATA TILEDB_DECREASING_DATA ctypedef enum tiledb_encryption_type_t: TILEDB_NO_ENCRYPTION TILEDB_AES_256_GCM ctypedef enum tiledb_filesystem_t: TILEDB_HDFS TILEDB_S3 TILEDB_AZURE TILEDB_GCS ctypedef enum tiledb_vfs_mode_t: TILEDB_VFS_READ TILEDB_VFS_WRITE TILEDB_VFS_APPEND # Types ctypedef struct tiledb_ctx_t: pass ctypedef struct tiledb_config_t: pass ctypedef struct tiledb_config_iter_t: pass ctypedef struct tiledb_enumeration_t: pass ctypedef struct tiledb_error_t: pass ctypedef struct tiledb_array_t: pass ctypedef struct tiledb_attribute_t: pass ctypedef struct tiledb_array_schema_t: pass ctypedef struct tiledb_dimension_t: pass ctypedef struct tiledb_domain_t: pass ctypedef struct tiledb_query_t: pass ctypedef struct tiledb_subarray_t: pass ctypedef struct tiledb_filter_list_t: pass ctypedef struct tiledb_vfs_t: pass ctypedef struct tiledb_vfs_fh_t: pass # Config int tiledb_config_alloc( tiledb_config_t** config, tiledb_error_t** error) void tiledb_config_free( tiledb_config_t** config) int tiledb_config_set( tiledb_config_t* config, const char* param, const char* value, tiledb_error_t** error) int tiledb_config_get( tiledb_config_t* config, const char* param, const char** value, tiledb_error_t** error) int tiledb_config_load_from_file( tiledb_config_t* config, const char* filename, tiledb_error_t** error) nogil int tiledb_config_unset( tiledb_config_t* config, const char* param, tiledb_error_t** error) int tiledb_config_save_to_file( tiledb_config_t* config, const char* filename, tiledb_error_t** error) nogil # Config Iterator int tiledb_config_iter_alloc( tiledb_config_t* config, const char* prefix, tiledb_config_iter_t** config_iter, tiledb_error_t** error) void tiledb_config_iter_free( tiledb_config_iter_t** config_iter) int tiledb_config_iter_here( tiledb_config_iter_t* config_iter, const char** param, const char** value, tiledb_error_t** error) int tiledb_config_iter_next( tiledb_config_iter_t* config_iter, tiledb_error_t** error) int tiledb_config_iter_done( tiledb_config_iter_t* config_iter, int* done, tiledb_error_t** error) # Context int tiledb_ctx_alloc( tiledb_config_t* config, tiledb_ctx_t** ctx) void tiledb_ctx_free( tiledb_ctx_t** ctx) int tiledb_ctx_get_config( tiledb_ctx_t* ctx, tiledb_config_t** config) int tiledb_ctx_get_last_error( tiledb_ctx_t* ctx, tiledb_error_t** error) int tiledb_ctx_get_stats( tiledb_ctx_t* ctx, char** stats_json); int tiledb_ctx_is_supported_fs( tiledb_ctx_t* ctx, tiledb_filesystem_t fs, int* is_supported) int tiledb_ctx_set_tag( tiledb_ctx_t* ctx, const char* key, const char* value) # Error int tiledb_error_message( tiledb_error_t* err, char** msg) void tiledb_error_free( tiledb_error_t** err) # Attribute int tiledb_attribute_alloc( tiledb_ctx_t* ctx, const char* name, tiledb_datatype_t atype, tiledb_attribute_t** attr) void tiledb_attribute_free( tiledb_attribute_t** attr) int tiledb_attribute_set_filter_list( tiledb_ctx_t* ctx_ptr, const tiledb_attribute_t* attr, tiledb_filter_list_t* filter_list) int tiledb_attribute_set_fill_value( tiledb_ctx_t *ctx, tiledb_attribute_t *attr, const void *value, uint64_t size) int tiledb_attribute_set_cell_val_num( tiledb_ctx_t* ctx, tiledb_attribute_t* attr, unsigned int cell_val_num) int tiledb_attribute_get_name( tiledb_ctx_t* ctx, const tiledb_attribute_t* attr, const char** name) int tiledb_attribute_get_type( tiledb_ctx_t* ctx, const tiledb_attribute_t* attr, tiledb_datatype_t* type) int tiledb_attribute_get_filter_list( tiledb_ctx_t* ctx, const tiledb_attribute_t* attr, tiledb_filter_list_t** filter_list) int tiledb_attribute_get_fill_value( tiledb_ctx_t *ctx, tiledb_attribute_t *attr, const void **value, uint64_t *size) int tiledb_attribute_get_cell_val_num( tiledb_ctx_t* ctx, const tiledb_attribute_t* attr, unsigned int* cell_val_num) int tiledb_attribute_set_nullable( tiledb_ctx_t* ctx, const tiledb_attribute_t* attr, uint8_t nullable) int tiledb_attribute_get_nullable( tiledb_ctx_t* ctx, const tiledb_attribute_t* attr, uint8_t* nullable) int tiledb_attribute_dump( tiledb_ctx_t* ctx, const tiledb_attribute_t* attr, FILE* out) # Datatype uint64_t tiledb_datatype_size( tiledb_datatype_t type); # Domain int tiledb_domain_alloc( tiledb_ctx_t* ctx, tiledb_domain_t** domain) void tiledb_domain_free( tiledb_domain_t** domain) int tiledb_domain_get_type( tiledb_ctx_t* ctx, const tiledb_domain_t* domain, tiledb_datatype_t* dtype) int tiledb_domain_get_ndim( tiledb_ctx_t* ctx, const tiledb_domain_t* domain, unsigned int* ndim) int tiledb_domain_add_dimension( tiledb_ctx_t* ctx, tiledb_domain_t* domain, tiledb_dimension_t* dim) int tiledb_domain_get_dimension_from_index( tiledb_ctx_t* ctx, const tiledb_domain_t* domain, unsigned int index, tiledb_dimension_t** dim) int tiledb_domain_get_dimension_from_name( tiledb_ctx_t* ctx, const tiledb_domain_t* domain, const char* name, tiledb_dimension_t** dim) int tiledb_domain_has_dimension( tiledb_ctx_t * ctx, const tiledb_domain_t* domain, const char* name, int32_t* has_dim) int tiledb_domain_dump( tiledb_ctx_t* ctx, const tiledb_domain_t* domain, FILE* out) # Dimension int tiledb_dimension_alloc( tiledb_ctx_t* ctx, const char* name, tiledb_datatype_t type, const void* dim_domain, const void* tile_extent, tiledb_dimension_t** dim) void tiledb_dimension_free( tiledb_dimension_t** dim) int tiledb_dimension_get_name( tiledb_ctx_t* ctx, const tiledb_dimension_t* dim, const char** name) int tiledb_dimension_get_cell_val_num( tiledb_ctx_t* ctx, const tiledb_dimension_t* dim, uint32_t* cell_val_num) int tiledb_dimension_get_type( tiledb_ctx_t* ctx, const tiledb_dimension_t* dim, tiledb_datatype_t* type) int tiledb_dimension_get_domain( tiledb_ctx_t* ctx, const tiledb_dimension_t* dim, const void** domain) int tiledb_dimension_get_tile_extent( tiledb_ctx_t* ctx, const tiledb_dimension_t* dim, const void** tile_extent) int tiledb_dimension_get_filter_list( tiledb_ctx_t *ctx, tiledb_dimension_t *dim, tiledb_filter_list_t **filter_list) int tiledb_dimension_set_filter_list( tiledb_ctx_t *ctx, tiledb_dimension_t *dim, tiledb_filter_list_t *filter_list) # Array schema int tiledb_array_schema_alloc( tiledb_ctx_t* ctx, tiledb_array_type_t array_type, tiledb_array_schema_t** array_schema) void tiledb_array_schema_free( tiledb_array_schema_t** array_schema) int tiledb_array_schema_add_attribute( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, tiledb_attribute_t* attr) int tiledb_array_schema_has_attribute( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, const char* name, int32_t* has_attr) int tiledb_array_schema_set_domain( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, tiledb_domain_t* domain); int tiledb_array_schema_set_capacity( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, uint64_t capacity); int tiledb_array_schema_set_cell_order( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, tiledb_layout_t cell_order); int tiledb_array_schema_set_tile_order( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, tiledb_layout_t tile_order) int tiledb_array_schema_set_offsets_filter_list( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schmea, tiledb_filter_list_t* filter_list) int tiledb_array_schema_set_coords_filter_list( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, tiledb_filter_list_t* filter_list) int tiledb_array_schema_set_validity_filter_list( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, tiledb_filter_list_t* filter_list) int tiledb_array_schema_check( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema) int tiledb_array_schema_load( tiledb_ctx_t* ctx, const char* array_uri, tiledb_array_schema_t** array_schema) nogil int tiledb_array_schema_get_array_type( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, tiledb_array_type_t* array_type) int tiledb_array_schema_get_capacity( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, uint64_t* capacity) int tiledb_array_schema_get_cell_order( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, tiledb_layout_t* cell_order) int tiledb_array_schema_get_coords_filter_list( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, tiledb_filter_list_t** filter_list) int tiledb_array_schema_get_offsets_filter_list( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, tiledb_filter_list_t** filter_list) int tiledb_array_schema_get_validity_filter_list( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, tiledb_filter_list_t** filter_list) int tiledb_array_schema_get_domain( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, tiledb_domain_t** domain) int tiledb_array_schema_get_tile_order( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, tiledb_layout_t* tile_order) int tiledb_array_schema_get_attribute_num( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, unsigned int* num_attributes) int tiledb_array_schema_get_attribute_from_index( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, unsigned int index, tiledb_attribute_t** attr) int tiledb_array_schema_get_attribute_from_name( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, const char* name, tiledb_attribute_t** attr) int tiledb_array_schema_get_array_name( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, const char** array_name) int tiledb_array_schema_get_allows_dups( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, int* allows_dups); int tiledb_array_schema_set_allows_dups( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, int allows_dups) int tiledb_array_schema_dump( tiledb_ctx_t* ctx, const tiledb_array_schema_t* array_schema, FILE* out) int tiledb_array_schema_get_version( tiledb_ctx_t* ctx, tiledb_array_schema_t* array_schema, uint32_t* version) int tiledb_array_get_open_timestamp_start( tiledb_ctx_t* ctx, tiledb_array_t* array, uint64_t* timestamp_start) int tiledb_array_get_open_timestamp_end( tiledb_ctx_t* ctx, tiledb_array_t* array, uint64_t* timestamp_end) int tiledb_array_set_config( tiledb_ctx_t* ctx, tiledb_array_t* array, tiledb_config_t* config) int tiledb_array_set_open_timestamp_start( tiledb_ctx_t* ctx, tiledb_array_t* array, uint64_t timestamp_start) int tiledb_array_set_open_timestamp_end( tiledb_ctx_t* ctx, tiledb_array_t* array, uint64_t timestamp_end) int tiledb_array_put_metadata( tiledb_ctx_t* ctx, tiledb_array_t* array, const char* key, tiledb_datatype_t value_type, uint32_t value_num, const void* value) nogil int tiledb_array_delete_metadata( tiledb_ctx_t* ctx, tiledb_array_t* array, const char* key) nogil int tiledb_array_has_metadata_key( tiledb_ctx_t* ctx, tiledb_array_t* array, const char* key, tiledb_datatype_t* value_type, int32_t* has_key) nogil int tiledb_array_get_metadata( tiledb_ctx_t* ctx, tiledb_array_t* array, const char* key, tiledb_datatype_t* value_type, uint32_t* value_num, const void** value) nogil int tiledb_array_get_metadata_num( tiledb_ctx_t* ctx, tiledb_array_t* array, uint64_t* num) nogil int tiledb_array_get_metadata_from_index( tiledb_ctx_t* ctx, tiledb_array_t* array, uint64_t index, const char** key, uint32_t* key_len, tiledb_datatype_t* value_type, uint32_t* value_num, const void** value) nogil int tiledb_array_consolidate_metadata( tiledb_ctx_t* ctx, const char* array_uri, tiledb_config_t* config) nogil int tiledb_array_delete( tiledb_ctx_t* ctx, const char* uri) nogil # Query int tiledb_query_alloc( tiledb_ctx_t* ctx, tiledb_array_t* array, tiledb_query_type_t query_type, tiledb_query_t** query) int tiledb_query_set_subarray_t( tiledb_ctx_t* ctx, tiledb_query_t* query, const tiledb_subarray_t*) int32_t tiledb_query_set_data_buffer( tiledb_ctx_t* ctx, tiledb_query_t* query, const char* name, void* buffer, uint64_t* buffer_size) int tiledb_query_set_validity_buffer( tiledb_ctx_t* ctx, tiledb_query_t* query, const char* name, uint8_t* buffer, uint64_t* buffer_size) int32_t tiledb_query_set_offsets_buffer( tiledb_ctx_t* ctx, tiledb_query_t* query, const char* name, uint64_t* buffer, uint64_t* buffer_size) int tiledb_query_set_layout( tiledb_ctx_t* ctx, tiledb_query_t* query, tiledb_layout_t layout) void tiledb_query_free( tiledb_query_t** query) int tiledb_query_finalize( tiledb_ctx_t* ctx, tiledb_query_t* query) nogil int tiledb_query_submit( tiledb_ctx_t* ctx, tiledb_query_t* query) nogil int tiledb_query_submit_async( tiledb_ctx_t* ctx, tiledb_query_t* query, void* (*callback)(void*) noexcept, void* callback_data) int tiledb_query_get_status( tiledb_ctx_t* ctx, tiledb_query_t* query, tiledb_query_status_t* status) int tiledb_query_get_subarray_t( tiledb_ctx_t* ctx, const tiledb_query_t* query, tiledb_subarray_t** subarray) int tiledb_query_get_type( tiledb_ctx_t* ctx, tiledb_query_t* query, tiledb_query_type_t* query_type) int tiledb_query_has_results( tiledb_ctx_t* ctx, tiledb_query_t* query, int* has_results) int tiledb_query_get_fragment_num( tiledb_ctx_t* ctx, const tiledb_query_t* query, uint32_t* num) int tiledb_query_get_fragment_uri( tiledb_ctx_t* ctx, const tiledb_query_t* query, uint64_t idx, const char** uri) int tiledb_query_get_fragment_timestamp_range( tiledb_ctx_t* ctx, const tiledb_query_t* query, uint64_t idx, uint64_t* t1, uint64_t* t2) int tiledb_query_get_est_result_size( tiledb_ctx_t* ctx, const tiledb_query_t* query, const char* attr_name, uint64_t* size) int tiledb_query_get_est_result_size_var( tiledb_ctx_t* ctx, const tiledb_query_t* query, const char* attr_name, uint64_t* size_off, uint64_t* size_val) int tiledb_query_get_stats( tiledb_ctx_t* ctx, tiledb_query_t* query, char** stats_json) # Subarray int tiledb_subarray_alloc( tiledb_ctx_t* ctx, const tiledb_array_t* array, tiledb_subarray_t** subarray) void tiledb_subarray_free(tiledb_subarray_t** subarray) int tiledb_subarray_add_range( tiledb_ctx_t* ctx, tiledb_subarray_t* subarray, uint32_t dim_idx, const void* start, const void* end, const void* stride) int tiledb_subarray_add_range_var( tiledb_ctx_t* ctx, tiledb_subarray_t* subarray, uint32_t dim_idx, const void* start, uint64_t start_size, const void* end, uint64_t end_size) int tiledb_subarray_set_subarray( tiledb_ctx_t* ctx, tiledb_subarray_t* subarray, const void* subarray_v) # Array int tiledb_array_alloc( tiledb_ctx_t* ctx, const char* uri, tiledb_array_t** array) int tiledb_array_open( tiledb_ctx_t* ctx, tiledb_array_t* array, tiledb_query_type_t query_type) nogil int tiledb_array_reopen( tiledb_ctx_t* ctx, tiledb_array_t* array) nogil int tiledb_array_reopen_at( tiledb_ctx_t* ctx, tiledb_array_t* array, uint64_t timestamp) nogil int tiledb_array_close( tiledb_ctx_t* ctx, tiledb_array_t* array) nogil void tiledb_array_free( tiledb_array_t** array) int tiledb_array_create( tiledb_ctx_t* ctx, const char* uri, const tiledb_array_schema_t* array_schema) nogil int tiledb_array_is_open( tiledb_ctx_t* ctx, tiledb_array_t* array, int* is_open) int tiledb_array_consolidate( tiledb_ctx_t* ctx, const char* array_path, tiledb_config_t* config) nogil int tiledb_array_delete_fragments_v2( tiledb_ctx_t* ctx, const char* uri, uint64_t timestamp_start, uint64_t timestamp_end) int tiledb_array_get_schema( tiledb_ctx_t* ctx, tiledb_array_t* array, tiledb_array_schema_t** array_schema) nogil int tiledb_array_get_timestamp( tiledb_ctx_t* ctx, tiledb_array_t* array, uint64_t* timestamp) nogil int tiledb_array_get_query_type( tiledb_ctx_t* ctx, tiledb_array_t* array, tiledb_query_type_t* query_type) int tiledb_array_get_non_empty_domain( tiledb_ctx_t* ctx, tiledb_array_t* array, void* domain, int* isempty) nogil int32_t tiledb_array_get_non_empty_domain_from_index( tiledb_ctx_t* ctx, tiledb_array_t* array, uint32_t idx, void* domain, int32_t* is_empty); int32_t tiledb_array_get_non_empty_domain_from_name( tiledb_ctx_t* ctx, tiledb_array_t* array, const char* name, void* domain, int32_t* is_empty); int32_t tiledb_array_get_non_empty_domain_var_size_from_index( tiledb_ctx_t* ctx, tiledb_array_t* array, uint32_t idx, uint64_t* start_size, uint64_t* end_size, int32_t* is_empty) int32_t tiledb_array_get_non_empty_domain_var_size_from_name( tiledb_ctx_t* ctx, tiledb_array_t* array, const char* name, uint64_t* start_size, uint64_t* end_size, int32_t* is_empty) int32_t tiledb_array_get_non_empty_domain_var_from_index( tiledb_ctx_t* ctx, tiledb_array_t* array, uint32_t idx, void* start, void* end, int32_t* is_empty); int32_t tiledb_array_get_non_empty_domain_var_from_name( tiledb_ctx_t* ctx, tiledb_array_t* array, const char* name, void* start, void* end, int32_t* is_empty) int32_t tiledb_array_get_enumeration( tiledb_ctx_t* ctx, const tiledb_array_t* array, const char* name, tiledb_enumeration_t** enumeration) int tiledb_array_vacuum( tiledb_ctx_t* ctx, const char* array_uri, tiledb_config_t* config) nogil # Resource management int tiledb_object_type( tiledb_ctx_t* ctx, const char* path, tiledb_object_t* otype) nogil int tiledb_object_remove( tiledb_ctx_t* ctx, const char* path) nogil int tiledb_object_move( tiledb_ctx_t* ctx, const char* old_path, const char* new_path) nogil int tiledb_object_ls( tiledb_ctx_t* ctx, const char* path, int (*callback)(const char*, tiledb_object_t, void*) noexcept, void* data) # VFS int tiledb_vfs_alloc( tiledb_ctx_t* ctx, tiledb_config_t* config, tiledb_vfs_t** vfs) void tiledb_vfs_free( tiledb_vfs_t** vfs) int tiledb_vfs_create_bucket( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri) nogil int tiledb_vfs_remove_bucket( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri) nogil int tiledb_vfs_empty_bucket( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri) nogil int tiledb_vfs_is_empty_bucket( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri, int* is_empty) nogil int tiledb_vfs_is_bucket( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri, int* is_bucket) nogil int tiledb_vfs_create_dir( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri) nogil int tiledb_vfs_is_dir( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri, int* is_dir) nogil int tiledb_vfs_remove_dir( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri) nogil int tiledb_vfs_is_file( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri, int* is_file) nogil int tiledb_vfs_remove_file( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri) nogil int tiledb_vfs_file_size( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri, uint64_t* size) nogil int tiledb_vfs_dir_size( tiledb_ctx_t * ctx, tiledb_vfs_t * vfs, const char * uri, uint64_t * size) nogil int tiledb_vfs_ls( tiledb_ctx_t * ctx, tiledb_vfs_t * vfs, const char * path, void * data) nogil int tiledb_vfs_move_file( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* old_uri, const char* new_uri) nogil int tiledb_vfs_move_dir( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* old_uri, const char* new_uri) nogil int tiledb_vfs_copy_file( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* old_uri, const char* new_uri) nogil int tiledb_vfs_copy_dir( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* old_uri, const char* new_uri) nogil int tiledb_vfs_open( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri, tiledb_vfs_mode_t mode, tiledb_vfs_fh_t** fh) nogil int tiledb_vfs_close( tiledb_ctx_t* ctx, tiledb_vfs_fh_t* fh) nogil int tiledb_vfs_read( tiledb_ctx_t* ctx, tiledb_vfs_fh_t* fh, uint64_t offset, void* buffer, uint64_t nbytes) nogil int tiledb_vfs_write( tiledb_ctx_t* ctx, tiledb_vfs_fh_t* fh, const void* buffer, uint64_t nbytes) nogil int tiledb_vfs_sync( tiledb_ctx_t* ctx, tiledb_vfs_fh_t* fh) nogil void tiledb_vfs_fh_free( tiledb_vfs_fh_t** fh) nogil int tiledb_vfs_fh_is_closed( tiledb_ctx_t* ctx, tiledb_vfs_fh_t* fh, int* is_closed) nogil int tiledb_vfs_touch( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, const char* uri) nogil int tiledb_vfs_get_config( tiledb_ctx_t* ctx, tiledb_vfs_t* vfs, tiledb_config_t** config) # URI int tiledb_uri_to_path( tiledb_ctx_t* ctx, const char* uri, char* path_out, unsigned* path_length) nogil int tiledb_datatype_to_str( tiledb_datatype_t datatype, const char** datatype_str ) cdef extern from "tiledb/tiledb_experimental.h": # Filestore int tiledb_filestore_schema_create( tiledb_ctx_t* ctx, const char* uri, tiledb_array_schema_t** array_schema) nogil int tiledb_array_upgrade_version( tiledb_ctx_t* ctx, const char* array_uri, tiledb_config_t* config) nogil int tiledb_array_consolidate_fragments( tiledb_ctx_t* ctx, const char* array_uri, const char** fragment_uris, const uint64_t num_fragments, tiledb_config_t* config ) # Free helper functions cpdef unicode ustring(object s) cpdef check_error(object ctx, int rc) cdef _raise_tiledb_error(tiledb_error_t* err_ptr) cdef _raise_ctx_err(tiledb_ctx_t* ctx_ptr, int rc) ############################################################################### # # # TileDB-Py API declaration # # # ############################################################################### cdef class Array(object): cdef object __weakref__ cdef object ctx cdef tiledb_array_t* ptr cdef unicode uri cdef unicode mode cdef bint _isopen cdef object view_attr # can be None cdef object key # can be None cdef object schema cdef object _buffers cdef object domain_index cdef object multi_index cdef object df cdef Metadata meta cdef object last_fragment_info cdef object pyquery cdef _ndarray_is_varlen(self, np.ndarray array) cdef class Query(object): cdef Array array cdef object attrs cdef object cond cdef object dims cdef object order cdef object coords cdef object index_col cdef object use_arrow cdef object return_arrow cdef object return_incomplete cdef object domain_index cdef object multi_index cdef object df cdef class ReadQuery(object): cdef object _buffers cdef object _offsets cdef class Metadata(object): cdef object array_ref