# This is a helper function to run tests on an external # directory, for example the contents of the Pandas # CSV tests: # https://github.com/pandas-dev/pandas/tree/master/pandas/tests/io/data/csv # It takes one argument, the test directory, and checks that all # .csv files contained within are correctly round-tripped via # `tiledb.from_csv` and `tiledb.open_dataframe` import os import sys import tempfile from glob import glob import pandas as pd import pandas._testing as tm import tiledb def check_csv_roundtrip(input_csv): basename = os.path.basename(input_csv) tmp = tempfile.mktemp(prefix="csvtest-" + basename) os.mkdir(tmp) array_uri = os.path.join(tmp, "tiledb_from_csv") tiledb.from_csv(array_uri, input_csv) df_csv = pd.read_csv(input_csv) df_back = tiledb.open_dataframe(array_uri) tm.assert_frame_equal(df_csv, df_back) return True def check_csv_dir(path): files = glob(os.path.join(path, "*.csv")) res = [check_csv_roundtrip(f) for f in files] assert len(res) == len(files), "Failed to check all files!" if __name__ == "__main__": if len(sys.argv) != 2: print("expected one argument: path to CSV directory") check_csv_dir(sys.argv[1])