import unittest import xml.etree.ElementTree import numpy as np import pytest import tiledb class DimensionTest(unittest.TestCase): def test_minimal_dimension(self): dim = tiledb.Dim(domain=(0, 4), tile=5) self.assertEqual(dim.name, "__dim_0", "automatic dimension name is incorrect") self.assertEqual(dim.shape, (5,)) self.assertEqual(dim.tile, 5) self.assertEqual(dim, dim) def test_dimension(self): dim = tiledb.Dim(name="d1", domain=(0, 3), tile=2) self.assertEqual(dim.name, "d1") self.assertEqual(dim.shape, (4,)) self.assertEqual(dim.tile, 2) self.assertEqual(dim, dim) try: assert xml.etree.ElementTree.fromstring(dim._repr_html_()) is not None except: pytest.fail(f"Could not parse dim._repr_html_(). Saw {dim._repr_html_()}") def test_dimension_filter(self): filters = [tiledb.GzipFilter(2)] dim = tiledb.Dim(name="df", domain=(0, 2), tile=1, filters=filters) self.assertEqual(dim.filters, filters) self.assertEqual(dim, dim) filter_list = tiledb.FilterList(filters) dim = tiledb.Dim(name="df", domain=(0, 2), tile=1, filters=filter_list) self.assertEqual(dim.filters, filter_list) self.assertEqual(dim, dim) with self.assertRaises(TypeError): tiledb.Dim(name="df", domain=(0, 2), tile=1, filters=1) def test_datetime_dimension(self): # Regular usage dim = tiledb.Dim( name="d1", domain=(np.datetime64("2010-01-01"), np.datetime64("2020-01-01")), tile=np.timedelta64(20, "D"), dtype=np.datetime64("", "D"), ) self.assertEqual(dim, dim) self.assertEqual(dim.dtype, np.dtype(np.datetime64("", "D"))) self.assertEqual(dim.tile, np.timedelta64(20, "D")) self.assertNotEqual(dim.tile, np.timedelta64(21, "D")) self.assertNotEqual(dim.tile, np.timedelta64(20, "W")) # Sanity check unit self.assertTupleEqual( dim.domain, (np.datetime64("2010-01-01"), np.datetime64("2020-01-01")) ) self.assertEqual(dim.shape, (3653,)) # No tile extent specified: this is not an error in 2.2 if tiledb.libtiledb.version() < (2, 2): with self.assertRaises(tiledb.TileDBError): tiledb.Dim( name="d1", domain=(np.datetime64("2010-01-01"), np.datetime64("2020-01-01")), dtype=np.datetime64("", "D"), ) # Integer tile extent is ok dim = tiledb.Dim( name="d1", domain=(np.datetime64("2010-01-01"), np.datetime64("2020-01-01")), tile=20, dtype=np.datetime64("", "D"), ) self.assertEqual(dim, dim) self.assertEqual(dim.dtype, np.dtype(np.datetime64("", "D"))) self.assertEqual(dim.tile, np.timedelta64(20, "D")) # Year resolution dim = tiledb.Dim( name="d1", domain=(np.datetime64("2010"), np.datetime64("2020")), tile=5, dtype=np.datetime64("", "Y"), ) self.assertEqual(dim, dim) self.assertEqual(dim.dtype, np.dtype(np.datetime64("", "Y"))) self.assertEqual(dim.tile, np.timedelta64(5, "Y")) self.assertTupleEqual( dim.domain, (np.datetime64("2010", "Y"), np.datetime64("2020", "Y")) ) # End domain promoted to day resolution dim = tiledb.Dim( name="d1", domain=(np.datetime64("2010-01-01"), np.datetime64("2020")), tile=2, dtype=np.datetime64("", "D"), ) self.assertEqual(dim, dim) self.assertEqual(dim.tile, np.timedelta64(2, "D")) self.assertTupleEqual( dim.domain, (np.datetime64("2010-01-01", "D"), np.datetime64("2020-01-01", "D")), ) # Domain values can't be integral with self.assertRaises(TypeError): dim = tiledb.Dim( name="d1", domain=(-10, 10), tile=2, dtype=np.datetime64("", "D") ) def test_shape(self): dim = tiledb.Dim(name="", dtype="|S0", var=True) with self.assertRaisesRegex( TypeError, "shape only valid for integer and datetime dimension domains", ): dim.shape @pytest.mark.xfail def test_fail_on_0_extent(self): tiledb.Dim(domain=(0, 10), tile=0)