import time import hypothesis as hp import hypothesis.strategies as st import numpy as np import pytest import tiledb from .common import has_pandas pd = pytest.importorskip("pandas") tm = pd._testing @pytest.mark.skipif(not has_pandas(), reason="pandas>=1.0,<3.0 not installed") @pytest.mark.parametrize("mode", ["np", "df"]) @hp.settings(deadline=None, verbosity=hp.Verbosity.verbose) @hp.given(st.binary()) def test_bytes_npdf(checked_path, mode, data): start = time.time() uri = "mem://" + checked_path.path() hp.note(f"!!! path '{uri}' time: {time.time() - start}") array = np.array([data], dtype="S0") start_ingest = time.time() if mode == "np": with tiledb.from_numpy(uri, array) as A: pass else: series = pd.Series(array) df = pd.DataFrame({"": series}) # NOTE: ctx required here for mem:// tiledb.from_pandas(uri, df, sparse=False, ctx=tiledb.default_ctx()) hp.note(f"{mode} ingest time: {time.time() - start_ingest}") # DEBUG tiledb.stats_enable() tiledb.stats_reset() # END DEBUG with tiledb.open(uri) as A: if mode == "np": np.testing.assert_array_equal(A.multi_index[:][""], array) else: tm.assert_frame_equal(A.df[:], df) hp.note(tiledb.stats_dump(print_out=False)) # DEBUG tiledb.stats_disable() duration = time.time() - start hp.note(f"!!! test_bytes_{mode} duration: {duration}") if duration > 2: # Hypothesis setup is (maybe) causing deadline exceeded errors # https://github.com/TileDB-Inc/TileDB-Py/issues/1194 # Set deadline=None and use internal timing instead. pytest.fail(f"!!! {mode} function body duration exceeded 2s: {duration}")