import numpy as np import pytest import tiledb from tiledb import TileDBError from tiledb.tests.common import DiskTestCase class SubarrayTest(DiskTestCase): def test_add_range(self): dim1 = tiledb.Dim("row", domain=(1, 10)) dim2 = tiledb.Dim("col", domain=(1, 10)) dom = tiledb.Domain(dim1, dim2) att = tiledb.Attr("val", dtype=np.uint64) schema = tiledb.ArraySchema(domain=dom, attrs=(att,)) uri = self.path("dense_array") tiledb.Array.create(uri, schema) with tiledb.open(uri, "w") as array: array[1:5, 1:5] = np.reshape(np.arange(1, 17, dtype=np.float64), (4, 4)) with tiledb.open(uri, "r") as array: subarray1 = tiledb.Subarray(array) # Check number of ranges: each dimension should have the default range. assert subarray1.num_dim_ranges(0) == 1 assert subarray1.num_dim_ranges(1) == 1 assert subarray1.shape() == (10, 10) # Add range to first dim and check still only 1 range (replace default). subarray1.add_dim_range(0, (1, 2)) assert subarray1.num_dim_ranges(0) == 1 assert subarray1.shape() == (2, 10) # Add additional range to first dim and check 2 ranges. subarray1.add_dim_range(0, (4, 4)) assert subarray1.num_dim_ranges(0) == 2 assert subarray1.shape() == (3, 10) def test_add_ranges_basic(self): uri = self.path("test_pyquery_basic") with tiledb.from_numpy(uri, np.random.rand(4)): pass with tiledb.open(uri) as array: subarray = tiledb.Subarray(array) subarray.add_ranges([[(0, 3)]]) with self.assertRaises(TileDBError): subarray.add_ranges([[(0, 3.0)]]) subarray.add_ranges([[(0, np.int32(3))]]) with self.assertRaises(TileDBError): subarray.add_ranges([[(3, "a")]]) with self.assertRaisesRegex( TileDBError, "Failed to cast dim range '\\(1.2344, 5.6789\\)' to dim type UINT64.*$", ): subarray.add_ranges([[(1.2344, 5.6789)]]) with self.assertRaisesRegex( TileDBError, "Failed to cast dim range '\\('aa', 'bbbb'\\)' to dim type UINT64.*$", ): subarray.add_ranges([[("aa", "bbbb")]]) @pytest.mark.skipif( tiledb.libtiledb.version()[0] == 2 and tiledb.libtiledb.version()[1] < 15, reason="dimension labels requires libtiledb version 2.15 or greater", ) def test_add_label_ranges_1d(self): # Create array schema with dimension labels dim = tiledb.Dim("d1", domain=(1, 10), dtype=np.uint32) dom = tiledb.Domain(dim) att = tiledb.Attr("a1", dtype=np.int64) dim_labels = {0: {"l1": dim.create_label_schema("increasing", np.int64)}} schema = tiledb.ArraySchema(domain=dom, attrs=(att,), dim_labels=dim_labels) # Create array uri = self.path("dense_array_with_label") tiledb.Array.create(uri, schema) # Add dimension label ranges with tiledb.open(uri, "r") as array: subarray1 = tiledb.Subarray(array) assert subarray1.num_dim_ranges(0) == 1 subarray1.add_label_range("l1", (-1, 1)) assert subarray1.num_dim_ranges(0) == 0 assert subarray1.num_label_ranges("l1") == 1 def test_copy_ranges(self): # Create array schema with dimension labels d1 = tiledb.Dim("d1", domain=(1, 10), dtype=np.uint32) d2 = tiledb.Dim("d2", domain=(1, 10), dtype=np.uint32) d3 = tiledb.Dim("d3", domain=(1, 10), dtype=np.uint32) d4 = tiledb.Dim("d4", domain=(1, 10), dtype=np.uint32) dom = tiledb.Domain(d1, d2, d3, d4) att = tiledb.Attr("a1", dtype=np.int64) schema = tiledb.ArraySchema(domain=dom, attrs=(att,)) # Create array uri = self.path("array4d") tiledb.Array.create(uri, schema) # Add ranges (1, 1) and (3, 3) to each dimension of the subarray. with tiledb.open(uri, "r") as array: subarray1 = tiledb.Subarray(array) subarray1.add_ranges( (((1, 1), (3, 3)), ((1, 1), (3, 3)), ((1, 1), (3, 3)), ((1, 1), (3, 3))) ) assert subarray1.num_dim_ranges(0) == 2 assert subarray1.num_dim_ranges(1) == 2 assert subarray1.num_dim_ranges(2) == 2 assert subarray1.num_dim_ranges(3) == 2 # Should copy ranges from d1 and d3. # All other dimensions should only have default range. subarray2 = tiledb.Subarray(array) subarray2.copy_ranges(subarray1, [0, 2]) assert subarray2.num_dim_ranges(0) == 2 assert subarray2.num_dim_ranges(1) == 1 assert subarray2.num_dim_ranges(2) == 2 assert subarray2.num_dim_ranges(3) == 1