# Copyright 2021 DeepMind Technologies Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # ============================================================================== """Configuration file for the Sphinx documentation builder.""" # This file only contains a selection of the most common options. For a full # list see the documentation: # http://www.sphinx-doc.org/en/master/config # -- Path setup -------------------------------------------------------------- # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # pylint: disable=g-bad-import-order # pylint: disable=g-import-not-at-top import inspect import os import sys def _add_annotations_import(path): """Appends a future annotations import to the file at the given path.""" with open(path) as f: contents = f.read() if contents.startswith('from __future__ import annotations'): # If we run sphinx multiple times then we will append the future import # multiple times too. return assert contents.startswith('#'), (path, contents.split('\n')[0]) with open(path, 'w') as f: # NOTE: This is subtle and not unit tested, we're prefixing the first line # in each Python file with this future import. It is important to prefix # not insert a newline such that source code locations are accurate (we link # to GitHub). The assertion above ensures that the first line in the file is # a comment so it is safe to prefix it. f.write('from __future__ import annotations ') f.write(contents) def _recursive_add_annotations_import(): for path, _, files in os.walk('../optax/'): for file in files: if file.endswith('.py'): _add_annotations_import(os.path.abspath(os.path.join(path, file))) if 'READTHEDOCS' in os.environ: _recursive_add_annotations_import() sys.path.insert(0, os.path.abspath('../')) sys.path.append(os.path.abspath('ext')) import optax from sphinxcontrib import katex # -- Project information ----------------------------------------------------- project = 'Optax' copyright = '2021, DeepMind' # pylint: disable=redefined-builtin author = 'Optax Contributors' # -- General configuration --------------------------------------------------- master_doc = 'index' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.autodoc', 'sphinx.ext.autosummary', 'sphinx.ext.doctest', 'sphinx.ext.inheritance_diagram', 'sphinx.ext.intersphinx', 'sphinx.ext.linkcode', 'sphinx.ext.napoleon', 'sphinxcontrib.katex', 'coverage_check', 'myst_nb', # This is used for the .ipynb notebooks 'sphinx_gallery.gen_gallery', 'sphinxcontrib.collections', 'sphinx_contributors' ] # so we don't have to do the canonical imports on every doctest doctest_global_setup = ''' import optax import jax import jax.numpy as jnp ''' # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This pattern also affects html_static_path and html_extra_path. exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # -- Options for autodoc ----------------------------------------------------- # The following typenames are re-written for public-facing type annotations. autodoc_type_aliases = { '~optax._src.base.GradientTransformation': 'optax.GradientTransformation', '~optax._src.base.Params': 'Params', '~optax._src.base.Updates': 'Updates', '~optax._src.base.OptState': 'OptState', '~optax._src.base.PyTree': 'optax.PyTree', 'base.GradientTransformation': 'optax.GradientTransformation', 'base.Params': 'optax.Params', 'base.Updates': 'optax.Updates', 'base.OptState': 'optax.OptState', 'base.PyTree': 'optax.PyTree', 'chex.ArrayTree': 'chex.ArrayTree', 'chex.Array': 'chex.Array', 'chex.Numeric': 'chex.Numeric' } autodoc_default_options = { 'member-order': 'bysource', 'special-members': True, 'exclude-members': '__repr__, __str__, __weakref__', } # -- Options for sphinx-collections collections = { 'examples': { 'driver': 'copy_folder', 'source': '../examples/', 'ignore': 'BUILD' } } # -- Options for sphinx-gallery ---------------------------------------------- sphinx_gallery_conf = { 'examples_dirs': '_collections/examples', # path to your example scripts 'gallery_dirs': ( '_collections/generated_examples/' ), # path to where to save gallery generated output 'ignore_pattern': r'_test\.py', # no gallery for test of examples 'doc_module': 'optax', 'backreferences_dir': os.path.join('modules', 'generated') } # -- Options for HTML output ------------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. html_theme = 'sphinx_book_theme' html_theme_options = { 'show_toc_level': 2, 'repository_url': 'https://github.com/google-deepmind/optax', 'use_repository_button': True, # add a "link to repository" button 'navigation_with_keys': False, } html_logo = 'images/logo.svg' html_favicon = 'images/favicon.svg' # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_css_files = [ 'css/custom.css', ] # -- Options for myst ------------------------------------------------------- myst_enable_extensions = [ 'amsmath', 'dollarmath', ] nb_execution_mode = 'force' nb_execution_allow_errors = False nb_render_image_options = {} nb_execution_excludepatterns = [ # slow examples 'nanolm.ipynb', 'cifar10_resnet.ipynb', 'adversarial_training.ipynb', 'reduce_on_plateau.ipynb', 'differentially_private_sgd.ipynb' ] # -- Options for katex ------------------------------------------------------ # See: https://sphinxcontrib-katex.readthedocs.io/en/0.4.1/macros.html latex_macros = r""" \def \d #1{\operatorname{#1}} """ # Translate LaTeX macros to KaTeX and add to options for HTML builder katex_macros = katex.latex_defs_to_katex_macros(latex_macros) katex_options = ( '{displayMode: true, fleqn: true, macros: {' + katex_macros + '}}' ) # Add LaTeX macros for LATEX builder latex_elements = {'preamble': latex_macros} # -- Source code links ------------------------------------------------------- def linkcode_resolve(domain, info): """Resolve a GitHub URL corresponding to Python object.""" if domain != 'py': return None try: mod = sys.modules[info['module']] except ImportError: return None obj = mod try: for attr in info['fullname'].split('.'): obj = getattr(obj, attr) except AttributeError: return None else: obj = inspect.unwrap(obj) try: filename = inspect.getsourcefile(obj) except TypeError: return None try: source, lineno = inspect.getsourcelines(obj) except OSError: return None # TODO(slebedev): support tags after we release an initial version. return ( 'https://github.com/google-deepmind/optax/tree/main/optax/%s#L%d#L%d' % ( os.path.relpath(filename, start=os.path.dirname(optax.__file__)), lineno, lineno + len(source) - 1, ) ) # -- Intersphinx configuration ----------------------------------------------- intersphinx_mapping = { 'jax': ('https://jax.readthedocs.io/en/latest/', None), 'flax': ('https://flax.readthedocs.io/en/latest/', None), 'chex': ('https://chex.readthedocs.io/en/latest/', None), } source_suffix = ['.rst', '.md', '.ipynb']