#!/usr/bin/env python # -*- coding: utf-8 -*- from os.path import exists, sys from setuptools import find_packages, setup def parse_version(fpath): """ Statically parse the version number from a python file """ import ast if not exists(fpath): raise ValueError("fpath={!r} does not exist".format(fpath)) with open(fpath, "r") as file_: sourcecode = file_.read() pt = ast.parse(sourcecode) class VersionVisitor(ast.NodeVisitor): def visit_Assign(self, node): for target in node.targets: if getattr(target, "id", None) == "__version__": self.version = node.value.s visitor = VersionVisitor() visitor.visit(pt) return visitor.version def parse_requirements(fname="requirements.txt", with_version=False): """ Parse the package dependencies listed in a requirements file but strips specific versioning information. Args: fname (str): path to requirements file with_version (bool, default=False): if true include version specs Returns: List[str]: list of requirements items """ import re from os.path import exists require_fpath = fname def parse_line(line): """ Parse information from a line in a requirements text file """ if line.startswith("-r "): # Allow specifying requirements in other files target = line.split(" ")[1] for info in parse_require_file(target): yield info else: info = {"line": line} if line.startswith("-e "): info["package"] = line.split("#egg=")[1] else: # Remove versioning from the package pat = "(" + "|".join([">=", "==", ">"]) + ")" parts = re.split(pat, line, maxsplit=1) parts = [p.strip() for p in parts] info["package"] = parts[0] if len(parts) > 1: op, rest = parts[1:] if ";" in rest: # Handle platform specific dependencies # http://setuptools.readthedocs.io/en/latest/setuptools.html#declaring-platform-specific-dependencies version, platform_deps = map(str.strip, rest.split(";")) info["platform_deps"] = platform_deps else: version = rest # NOQA info["version"] = (op, version) yield info def parse_require_file(fpath): with open(fpath, "r") as f: for line in f.readlines(): line = line.strip() if line and not line.startswith("#"): for info in parse_line(line): yield info def gen_packages_items(): if exists(require_fpath): for info in parse_require_file(require_fpath): parts = [info["package"]] if with_version and "version" in info: parts.extend(info["version"]) if not sys.version.startswith("3.4"): # apparently package_deps are broken in 3.4 platform_deps = info.get("platform_deps") if platform_deps is not None: parts.append(";" + platform_deps) item = "".join(parts) yield item packages = list(gen_packages_items()) return packages def parse_description(fpath): """ Parse the description in the README file """ # Check this exists, otherwise pip install breaks if exists(fpath): with open(fpath, "r") as f: text = f.read() return text return "" NAME = "pgmpy" VERSION = parse_version("pgmpy/__init__.py") # must be global for git tags if __name__ == "__main__": setup( name=NAME, version=VERSION, description="A library for Probabilistic Graphical Models", packages=find_packages(exclude=["tests"]), include_package_data=True, package_data={"": ["utils/example_models/*.bif.gz"]}, author="Ankur Ankan", author_email="ankurankan@gmail.com", url="https://github.com/pgmpy/pgmpy", license="MIT", classifiers=[ "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", "Programming Language :: Python :: 3.12", "Intended Audience :: Education", "Intended Audience :: Science/Research", "Operating System :: Unix", "Operating System :: POSIX", "Operating System :: Microsoft :: Windows", "Operating System :: MacOS", "Topic :: Scientific/Engineering", "Topic :: Scientific/Engineering :: Artificial Intelligence", "Topic :: Scientific/Engineering :: Bio-Informatics", ], long_description=parse_description("README.md"), long_description_content_type="text/markdown", install_requires=parse_requirements("requirements/runtime.txt"), extras_require={ "all": parse_requirements("requirements.txt"), "tests": parse_requirements("requirements/tests.txt"), }, )