Update database

README.md

@@ -1,21 +1,30 @@
 ---
 configs:
-  - config_name: pey_split_1
-    data_files:
-      - split: train
-        path: pey_split_1/train.csv
-      - split: val
-        path: pey_split_1/val.csv
-      - split: test
-        path: pey_split_1/test.csv
-  - config_name: pey_split_2
-    data_files:
-      - split: train
-        path: pey_split_2/train.csv
-      - split: val
-        path: pey_split_2/val.csv
-      - split: test
-        path: pey_split_2/test.csv
+    - config_name: split_1
+        data_files:
+            - split: train
+            path: split_1/train.csv
+            - split: val
+            path: split_1/val.csv
+            - split: test
+            path: split_1/test.csv
+    - config_name: split_2
+        data_files:
+            - split: train
+            path: split_2/train.csv
+    - config_name: split_3
+        data_files:
+            - split: train
+            path: split_3/train.csv
+            - split: val
+            path: split_3/val.csv
+            - split: test
+            path: split_3/test.csv
+    - config_name: split_4
+        data_files:
+            - split: train
+            path: split_4/train.csv
+
 ---
 
 Let's see

pey_split_1/test.csv

@@ -1,4 +0,0 @@
-my_protein,my_target
-SEQWENCE,GlobGlob
-SEQPRT,GlobSP
-PRTEIN,lobSPa

pey_split_1/train.csv

@@ -1,4 +0,0 @@
-my_protein,my_target
-SEQWENCE,Gobtrain
-SEQPRT,GlobSP
-PRTEIN,lobSPt

pey_split_1/val.csv

@@ -1,4 +0,0 @@
-my_protein,my_target
-SEQWENCE,Gobtestn
-SEQPRT,GlobSP
-PRTEIN,lobSPt

pey_split_2/test.csv

@@ -1,4 +0,0 @@
-my_protein,my_target
-SEasENCE,GlobGlob
-SEQPRT,GlobSP
-PRTEIN,lobSPa

pey_split_2/train.csv

@@ -1,4 +0,0 @@
-my_protein,my_target
-SEQWENrE,Gobtrain
-SEQPRT,GlobSP
-PRTEIN,lobSPt

pey_split_2/val.csv

@@ -1,4 +0,0 @@
-my_protein,my_target
-SEQWENCE,Gobtestn
-SEQPRT,GlobSP
-PRTgfN,lobSPt

split_1/test.csv

@@ -0,0 +1,11 @@
+protein_sequence,protein_class
+MSTNPKPQR,Enzyme
+MPQEKRVTVM,Receptor
+VSVNIKHGG,Transporter
+MGSSHHHHHH,Chaperone
+MTAIQDNRFS,Transcription_Factor
+MKTAYIAKQ,Kinase
+MLLGGGYAGF,Membrane_Protein
+MAVTSPQV,Signal_Transduction
+MSRPPGVLE,Enzyme
+MTDGTQALFG,Protease

split_1/train.csv

@@ -0,0 +1,11 @@
+protein_sequence,protein_class
+MVLSPADKTNVKAAWGK,Enzyme
+MAEKVYNIPRLQATV,Receptor
+MEQEVFDKPLDIDV,Transcription_Factor
+MKDREYHLFSTGLY,Kinase
+MNNGFFTVPNAQLS,Enzyme
+MSNVTGTRFSPTAK,Transporter
+MEKYDVEVAPRLIG,Receptor
+MPLKLDLITKTWEQ,Transcription_Factor
+MGGMPMPGTWAFEK,Channel
+MLQSITEKNWQHAFV,Enzyme

split_1/val.csv

@@ -0,0 +1,11 @@
+protein_sequence,protein_class
+MAVMKVVKGLVK,Enzyme
+MFLLVLALVFF,Transporter
+MNEKAGPLVQWI,Receptor
+MLYHNRPTKQVL,Signaling
+MKYTLIPGSKV,Chaperone
+MPTKLVKQPVFA,Transcription_Factor
+MIPSSGLAGQKW,Kinase
+MGKVEVGRETI,Protease
+MSSLVDLFYAVR,Membrane_Protein
+MGLGTVYVVKPA,Cell_Adhesion

split_2/train.csv

@@ -0,0 +1,31 @@
+protein_sequence,protein_class
+MAVTSKPGKMGV,Enzyme
+MDEQLNAIGKF,Receptor
+MSSAGFTFSLKR,Transporter
+MRTNSLMAAVP,Chaperone
+MGVVVTDKYIKP,Transcription_Factor
+MPLKQFEVVFAE,Kinase
+MEWAGLNGIKVF,Membrane_Protein
+MKGLLDTVKAA,Signal_Transduction
+MVVQATGSSGGV,Protease
+MKGYPKNALAVR,Cell_Adhesion
+MKKGEEVAKVAE,Enzyme
+MNTLLGAEVLK,Receptor
+MGVLKQFGKNGP,Transporter
+MSTALNLKRK,Chaperone
+MIAASMGVKVF,Transcription_Factor
+MKYKNSVGSKT,Kinase
+MPGVEVPAWAKF,Membrane_Protein
+MPEAALATGKN,Signal_Transduction
+MTGQVEAGVGV,Protease
+MLKMNTSQEKV,Cell_Adhesion
+MGLSDGEWQLVL,Enzyme
+MEWAKKNSLDVN,Receptor
+MLNVDKTGAKF,Transporter
+MDEKTFHSYAKP,Chaperone
+MGQIHLTNRFLL,Transcription_Factor
+MTVKDFAIPVYK,Kinase
+MRWLQGEWLKAV,Membrane_Protein
+MTSVFTNYPKEL,Signal_Transduction
+MKLQPGTGRVAV,Protease
+MGMPQFSEVIPR,Cell_Adhesion

split_3/test.csv

@@ -0,0 +1,11 @@
+protein_sequence,secondary_structure
+MGLSDGEWQL,HEEEEHLHLL
+MEWAKKNSLD,HHHEEELHLH
+MLNVDKTGAK,HHHHHELELL
+MDEKTFHSYA,EEEHLHLLLL
+MGQIHLTNRF,HHHEEEEHLH
+MTVKDFAIPV,HHHLEEEEEE
+MRWLQGEWLK,HHHELEHHHH
+MTSVFTNYPK,LLHEHHLLHH
+MKLQPGTGRV,HHHEEEEHHH
+MGMPQFSEVI,HHHLLLHHLL

split_3/train.csv

@@ -0,0 +1,13 @@
+protein_sequence,secondary_structure
+MAVTSKPGKM,HHHLELLLLL
+MDEQLNAIGK,EEELHHHLHH
+MSSAGFTFSL,HHHEEEEHLH
+MRTNSLMAAV,HHHLLLLLLH
+MGVVVTDKYI,HHHHLHELEE
+MPLKQFEVVF,LLLHEEHEEH
+MEWAGLNGIK,HHHEEEHHLL
+MKGLLDTVKA,HHHHLEEEEE
+MVVQATGSSG,HHHLLLLLEL
+MKGYPKNALV,HHHLELEHHH
+
+

split_3/val.csv

@@ -0,0 +1,11 @@
+protein_sequence,secondary_structure
+MKKGEEVAKA,EEELLLHEEH
+MNTLLGAEVL,HHHEEELHHH
+MGVLKQFGKN,HHHLEHEEEE
+MSTALNLKRV,HHHLLLHHLL
+MIAASMGVKV,HHHHHLLLHL
+MKYKNSVGSK,HEEELHHHHL
+MPGVEVPAWA,HHHLLLLLEE
+MPEAALATGK,HHHHLELELL
+MTGQVEAGVG,HHHEEEEHLH
+MLKMNTSQEK,HHHLELEHLL

split_4/train.csv

@@ -0,0 +1,31 @@
+protein_sequence,secondary_structure
+MAVTSKPGKM,HHHLELLLLL
+MDEQLNAIGK,EEELHHHLHH
+MSSAGFTFSL,HHHEEEEHLH
+MRTNSLMAAV,HHHLLLLLLH
+MGVVVTDKYI,HHHHLHELEE
+MPLKQFEVVF,LLLHEEHEEH
+MEWAGLNGIK,HHHEEEHHLL
+MKGLLDTVKA,HHHHLEEEEE
+MVVQATGSSG,HHHLLLLLEL
+MKGYPKNALV,HHHLELEHHH
+MKKGEEVAKA,EEELLLHEEH
+MNTLLGAEVL,HHHEEELHHH
+MGVLKQFGKN,HHHLEHEEEE
+MSTALNLKRV,HHHLLLHHLL
+MIAASMGVKV,HHHHHLLLHL
+MKYKNSVGSK,HEEELHHHHL
+MPGVEVPAWA,HHHLLLLLEE
+MPEAALATGK,HHHHLELELL
+MTGQVEAGVG,HHHEEEEHLH
+MLKMNTSQEK,HHHLELEHLL
+MGLSDGEWQL,HEEEEHLHLL
+MEWAKKNSLD,HHHEEELHLH
+MLNVDKTGAK,HHHHHELELL
+MDEKTFHSYA,EEEHLHLLLL
+MGQIHLTNRF,HHHEEEEHLH
+MTVKDFAIPV,HHHLEEEEEE
+MRWLQGEWLK,HHHELEHHHH
+MTSVFTNYPK,LLHEHHLLHH
+MKLQPGTGRV,HHHEEEEHHH
+MGMPQFSEVI,HHHLLLHHLL