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+ ARHGAP1
247
+ ARHGAP12
248
+ ARHGAP15
249
+ ARHGAP24
250
+ ARHGAP26
251
+ ARHGAP29
252
+ ARHGAP31
253
+ ARHGAP42
254
+ ARHGEF17
255
+ ARHGEF18
256
+ ARHGEF25
257
+ ARHGEF26
258
+ ARHGEF26-AS1
259
+ ARHGEF3
260
+ ARID1A
261
+ ARID1B
262
+ ARID3C
263
+ ARID5A
264
+ ARID5B
265
+ ARIH2
266
+ ARL14EP
267
+ ARL15
268
+ ARL17B
269
+ ARL6IP6
270
+ ARMC4
271
+ ARMS2
272
+ ARNT
273
+ ARNTL
274
+ ARPC2
275
+ ARPC5L
276
+ ARRDC1
277
+ ARVCF
278
+ ASB13
279
+ ASB15
280
+ ASCC2
281
+ ASCL3
282
+ ASIC4
283
+ ASPM
284
+ ASTL
285
+ ASTN2
286
+ ASXL3
287
+ ATAD5
288
+ ATF1
289
+ ATF6B
290
+ ATG13
291
+ ATG7
292
+ ATP10A
293
+ ATP12A
294
+ ATP13A1
295
+ ATP1B1
296
+ ATP1B3
297
+ ATP2B1
298
+ ATP4B
299
+ ATP5B
300
+ ATP6V0A1
301
+ ATP6V0A2
302
+ ATP8B3
303
+ ATP8B4
304
+ ATXN1
305
+ ATXN2
306
+ ATXN3
307
+ ATXN7
308
+ AURKAIP1
309
+ AUTS2
310
+ AXDND1
311
+ AZGP1P1
312
+ AZIN1
313
+ B4GALT5
314
+ B9D1
315
+ BAG3
316
+ BAG4
317
+ BAG6
318
+ BAIAP3
319
+ BAK1
320
+ BANF1P5
321
+ BANK1
322
+ BANP
323
+ BAZ1B
324
+ BAZ2A
325
+ BCAP29
326
+ BCAR3
327
+ BCAS3
328
+ BCKDHB
329
+ BCL2
330
+ BCL2L1
331
+ BCL7A
332
+ BCL7B
333
+ BCL7C
334
+ BCS1L
335
+ BDH2
336
+ BDNF
337
+ BDNF-AS
338
+ BEAN1
339
+ BEND3P2
340
+ BEND7
341
+ BICC1
342
+ BLK
343
+ BLOC1S5-TXNDC5
344
+ BLZF1
345
+ BMP6
346
+ BMP8A
347
+ BMPR1B
348
+ BNC2
349
+ BNIP1
350
+ BNIP3
351
+ BNIP3L
352
+ BOD1L1
353
+ BRAP
354
+ BRCA1
355
+ BRD1
356
+ BRE
357
+ BRMS1L
358
+ BRPF3
359
+ BRSK2
360
+ BRWD1
361
+ BSN
362
+ BTBD3
363
+ BTNL2
364
+ BTRC
365
+ BZRAP1-AS1
366
+ C10orf107
367
+ C10orf32
368
+ C10orf32-ASMT
369
+ C10orf76
370
+ C11orf16
371
+ C11orf24
372
+ C11orf30
373
+ C11orf49
374
+ C12orf54
375
+ C12orf65
376
+ C12orf71
377
+ C12orf76
378
+ C15orf26
379
+ C16orf93
380
+ C16orf96
381
+ C17orf104
382
+ C17orf82
383
+ C19orf68
384
+ C1GALT1
385
+ C1QTNF4
386
+ C1QTNF8
387
+ C1orf116
388
+ C1orf132
389
+ C1orf167
390
+ C1orf172
391
+ C1orf185
392
+ C1orf21
393
+ C1orf64
394
+ C2
395
+ C20orf187
396
+ C20orf203
397
+ C22orf31
398
+ C2orf43
399
+ C2orf88
400
+ C3orf35
401
+ C3orf84
402
+ C4BPAP2
403
+ C4orf51
404
+ C5
405
+ C5orf56
406
+ C6orf1
407
+ C6orf10
408
+ C6orf25
409
+ C7orf50
410
+ C7orf63
411
+ C8orf12
412
+ C9orf37
413
+ C9orf43
414
+ C9orf66
415
+ CACNA1C
416
+ CACNA1D
417
+ CACNA1H
418
+ CACNA2D2
419
+ CACNB2
420
+ CACNB4
421
+ CADM2
422
+ CADPS
423
+ CALB2
424
+ CALCOCO1
425
+ CALML4
426
+ CALML6
427
+ CALR4P
428
+ CAMK2B
429
+ CAMK2G
430
+ CAMP
431
+ CAMTA1
432
+ CAND1
433
+ CAPG
434
+ CAPRIN1
435
+ CAPZA1
436
+ CAPZA2
437
+ CARS2
438
+ CASC15
439
+ CASC16
440
+ CASP7
441
+ CASP9
442
+ CAST
443
+ CASZ1
444
+ CATSPER2P1
445
+ CAV1
446
+ CBFA2T2
447
+ CBR4
448
+ CBWD1
449
+ CBX1
450
+ CCBL2
451
+ CCDC104
452
+ CCDC141
453
+ CCDC144CP
454
+ CCDC147
455
+ CCDC157
456
+ CCDC163P
457
+ CCDC17
458
+ CCDC181
459
+ CCDC30
460
+ CCDC33
461
+ CCDC36
462
+ CCDC41
463
+ CCDC58
464
+ CCDC6
465
+ CCDC66
466
+ CCDC68
467
+ CCDC77
468
+ CCDC79
469
+ CCKBR
470
+ CCL19
471
+ CCL27
472
+ CCM2
473
+ CCND1
474
+ CCND2-AS1
475
+ CCNE1
476
+ CCNL2
477
+ CCNT2
478
+ CCNT2-AS1
479
+ CCNYL2
480
+ CCT2
481
+ CCT6A
482
+ CCT6B
483
+ CCT7
484
+ CD151
485
+ CD160
486
+ CD164L2
487
+ CD46
488
+ CD55
489
+ CDC123
490
+ CDC14A
491
+ CDC16
492
+ CDC20
493
+ CDC25A
494
+ CDC42BPA
495
+ CDC42EP3
496
+ CDH13
497
+ CDH16
498
+ CDH20
499
+ CDH4
500
+ CDHR4
501
+ CDIP1
502
+ CDK10
503
+ CDK11B
504
+ CDK14
505
+ CDK17
506
+ CDK2AP1
507
+ CDK5R1
508
+ CDK5RAP1
509
+ CDK6
510
+ CDKAL1
511
+ CDKL1
512
+ CDKN1A
513
+ CDKN1B
514
+ CDKN2B-AS1
515
+ CDKN2C
516
+ CDON
517
+ CDYL2
518
+ CELA2A
519
+ CELA2B
520
+ CELF1
521
+ CENPE
522
+ CENPM
523
+ CENPP
524
+ CEP120
525
+ CEP164
526
+ CEP170
527
+ CEP68
528
+ CEP85L
529
+ CEP97
530
+ CERS1
531
+ CERS2
532
+ CERS5
533
+ CFB
534
+ CFDP1
535
+ CFHR5
536
+ CFL1P1
537
+ CFL1P2
538
+ CHAC1
539
+ CHAF1B
540
+ CHCHD1
541
+ CHCHD2P6
542
+ CHD2
543
+ CHD3
544
+ CHD6
545
+ CHDH
546
+ CHID1
547
+ CHKA
548
+ CHMP1A
549
+ CHMP4C
550
+ CHP1
551
+ CHPF
552
+ CHTF8
553
+ CIAO1
554
+ CIB4
555
+ CICP26
556
+ CIRH1A
557
+ CISD1
558
+ CISD2
559
+ CKAP5
560
+ CKB
561
+ CKLF
562
+ CLCA2
563
+ CLCN6
564
+ CLCNKA
565
+ CLDN12
566
+ CLDN23
567
+ CLEC16A
568
+ CLIC1
569
+ CLIC4
570
+ CLN6
571
+ CLN8
572
+ CLNS1A
573
+ CLOCK
574
+ CLP1
575
+ CLPB
576
+ CLSTN2
577
+ CLTA
578
+ CLTC
579
+ CMIP
580
+ CMSS1
581
+ CMTM2
582
+ CNNM2
583
+ CNOT1
584
+ CNTF
585
+ CNTFR
586
+ COBLL1
587
+ COCH
588
+ COG2
589
+ COG5
590
+ COG8
591
+ COL15A1
592
+ COL18A1
593
+ COL21A1
594
+ COL27A1
595
+ COL4A1
596
+ COL4A2
597
+ COL4A4
598
+ COL5A3
599
+ COL6A1
600
+ COL6A3
601
+ COL8A1
602
+ COLEC11
603
+ COMMD7
604
+ COPB1
605
+ COPE
606
+ COPS2
607
+ COPS4
608
+ COPZ2
609
+ CORO7
610
+ CORO7-PAM16
611
+ COX14
612
+ COX4I2
613
+ COX5A
614
+ CPEB4
615
+ CPLX3
616
+ CPS1
617
+ CPSF3L
618
+ CPT1A
619
+ CPT1C
620
+ CPXM1
621
+ CR1L
622
+ CRADD
623
+ CRAT
624
+ CRB1
625
+ CREB3L1
626
+ CREB3L2
627
+ CREB3L4
628
+ CREB5
629
+ CREBRF
630
+ CRELD2
631
+ CRHR1
632
+ CRHR1-IT1
633
+ CRIM1
634
+ CRIP3
635
+ CRK
636
+ CRLF3
637
+ CRTC2
638
+ CSK
639
+ CSMD1
640
+ CSNK1G3
641
+ CSNK2B
642
+ CSNK2B-LY6G5B-1181
643
+ CSPG5
644
+ CSRP3
645
+ CTA-292E10.6
646
+ CTA-398F10.2
647
+ CTAGE5
648
+ CTB-111F10.1
649
+ CTB-111H14.1
650
+ CTB-133G6.1
651
+ CTB-175E5.7
652
+ CTB-31O20.6
653
+ CTB-47B8.4
654
+ CTBP1
655
+ CTBP1-AS2
656
+ CTBP2
657
+ CTBP2P2
658
+ CTC-209H22.3
659
+ CTC-228N24.3
660
+ CTC-296K1.3
661
+ CTC-347C20.2
662
+ CTC-435M10.3
663
+ CTC-461H2.3
664
+ CTC-490E21.12
665
+ CTC-498M16.4
666
+ CTC-529P8.1
667
+ CTC-782O7.1
668
+ CTD-2023N9.1
669
+ CTD-2026G22.1
670
+ CTD-2033A16.3
671
+ CTD-2037L6.2
672
+ CTD-2066L21.3
673
+ CTD-2128A3.2
674
+ CTD-2132H18.3
675
+ CTD-2140G10.1
676
+ CTD-2184C24.2
677
+ CTD-2207O23.3
678
+ CTD-2207P18.2
679
+ CTD-2218G20.1
680
+ CTD-2227E11.1
681
+ CTD-2260A17.2
682
+ CTD-2315E11.1
683
+ CTD-2342J14.6
684
+ CTD-2342N23.3
685
+ CTD-2349B8.1
686
+ CTD-2377D24.8
687
+ CTD-2382E5.1
688
+ CTD-2383M3.1
689
+ CTD-2501B8.5
690
+ CTD-2540M10.1
691
+ CTD-2545M3.6
692
+ CTD-2552K11.2
693
+ CTD-2560E9.3
694
+ CTD-2562J15.6
695
+ CTD-2568P8.1
696
+ CTD-3046C4.1
697
+ CTD-3064M3.1
698
+ CTD-3064M3.3
699
+ CTD-3137H5.1
700
+ CTD-3216D2.4
701
+ CTF1
702
+ CTF2P
703
+ CTNNA3
704
+ CTNNB1
705
+ CTNND1
706
+ CTPS1
707
+ CTSK
708
+ CTSS
709
+ CTSZ
710
+ CUBNP1
711
+ CUX2
712
+ CWC27
713
+ CYBRD1
714
+ CYCSP51
715
+ CYCSP55
716
+ CYFIP1
717
+ CYP11B2
718
+ CYP17A1
719
+ CYP1A2
720
+ CYP20A1
721
+ CYP21A1P
722
+ CYP21A2
723
+ CYP27A1
724
+ CYP2C18
725
+ CYP2C19
726
+ CYP2W1
727
+ CYP46A1
728
+ CYP7B1
729
+ CYR61
730
+ CYTH1
731
+ DACH1
732
+ DAG1
733
+ DAGLA
734
+ DALRD3
735
+ DAZAP1
736
+ DBF4B
737
+ DBH
738
+ DCAF4
739
+ DCAKD
740
+ DCDC1
741
+ DCP2
742
+ DCUN1D4
743
+ DDAH1
744
+ DDB2
745
+ DDHD2
746
+ DDI2
747
+ DDX5
748
+ DEF8
749
+ DEFB119
750
+ DEFB124
751
+ DEGS2
752
+ DENND2A
753
+ DENND4B
754
+ DEPDC5
755
+ DEPTOR
756
+ DFNA5
757
+ DFNB31
758
+ DGKB
759
+ DGKH
760
+ DGKZ
761
+ DHODH
762
+ DHX30
763
+ DIEXF
764
+ DIP2A
765
+ DIP2B
766
+ DIRC3
767
+ DKFZP761J1410
768
+ DKFZP779L1853
769
+ DLC1
770
+ DLEU1
771
+ DLEU2
772
+ DLST
773
+ DMRTA2
774
+ DNAH17
775
+ DNAH3
776
+ DNAJA3
777
+ DNAJB4
778
+ DNAJC11
779
+ DNAJC12
780
+ DNAJC16
781
+ DNAJC27
782
+ DNAJC27-AS1
783
+ DNAJC5
784
+ DNAJC9
785
+ DNAJC9-AS1
786
+ DND1P1
787
+ DNM2
788
+ DNM3
789
+ DNMT1
790
+ DNMT3B
791
+ DOCK4
792
+ DOCK6
793
+ DOCK8
794
+ DOT1L
795
+ DPEP1
796
+ DPF3
797
+ DPYSL2
798
+ DRG1
799
+ DSP
800
+ DUS4L
801
+ DUSP16
802
+ DUSP2
803
+ DUSP8
804
+ DVL1
805
+ DYNC1LI2
806
+ DYNLRB1
807
+ DYSF
808
+ EBF1
809
+ EBF2
810
+ ECD
811
+ EDEM2
812
+ EDN1
813
+ EDNRA
814
+ EEF1E1-BLOC1S5
815
+ EEFSEC
816
+ EEPD1
817
+ EFEMP1
818
+ EFHB
819
+ EFR3B
820
+ EFS
821
+ EFTUD2
822
+ EHBP1L1
823
+ EHD4
824
+ EHMT1
825
+ EIF2AK4
826
+ EIF2AP4
827
+ EIF2B2
828
+ EIF4B
829
+ ELAVL3
830
+ ELFN1
831
+ ELK3
832
+ ELL
833
+ ELMOD3
834
+ ELN
835
+ ELOVL1
836
+ ELOVL3
837
+ ELTD1
838
+ EMG1
839
+ EML1
840
+ ENKUR
841
+ ENO2
842
+ ENPEP
843
+ ENPP2
844
+ ENSA
845
+ EPB41
846
+ EPB41L2
847
+ EPC1
848
+ EPM2AIP1
849
+ EPN2
850
+ EPS15
851
+ EPS8L2
852
+ ERAP1
853
+ ERBB3
854
+ ERBB4
855
+ ERG
856
+ ESR1
857
+ ESRRG
858
+ ETNK2
859
+ EVA1C
860
+ EVL
861
+ EXD1
862
+ EXO1
863
+ EXOC6B
864
+ F13B
865
+ F2
866
+ FADS2
867
+ FAF1
868
+ FAHD2CP
869
+ FAM109A
870
+ FAM117A
871
+ FAM118A
872
+ FAM129B
873
+ FAM13A
874
+ FAM13B
875
+ FAM149B1
876
+ FAM162A
877
+ FAM168A
878
+ FAM171A2
879
+ FAM172BP
880
+ FAM174B
881
+ FAM178A
882
+ FAM180B
883
+ FAM186A
884
+ FAM193A
885
+ FAM19A2
886
+ FAM208A
887
+ FAM208B
888
+ FAM213A
889
+ FAM219B
890
+ FAM21FP
891
+ FAM222B
892
+ FAM46A
893
+ FAM46B
894
+ FAM53A
895
+ FAM89B
896
+ FAM92A1P1
897
+ FAM99B
898
+ FANCA
899
+ FARP2
900
+ FAT3
901
+ FBF1
902
+ FBLN5
903
+ FBLN7
904
+ FBN1
905
+ FBN2
906
+ FBRS
907
+ FBRSL1
908
+ FBXL17
909
+ FBXL19
910
+ FBXL19-AS1
911
+ FBXL7
912
+ FBXO22
913
+ FBXO33
914
+ FBXO36
915
+ FBXO38
916
+ FBXO41
917
+ FBXW2
918
+ FCF1
919
+ FCN3
920
+ FER
921
+ FER1L5
922
+ FERMT2
923
+ FERMT3
924
+ FES
925
+ FGD5
926
+ FGD6
927
+ FGF21
928
+ FGF5
929
+ FGF8
930
+ FGFR1
931
+ FGGY
932
+ FGR
933
+ FHL3
934
+ FHL5
935
+ FHOD3
936
+ FIGN
937
+ FIP1L1
938
+ FKBP10
939
+ FKBPL
940
+ FLT3
941
+ FMNL3
942
+ FN1
943
+ FNBP4
944
+ FNDC1
945
+ FNDC3B
946
+ FOLH1
947
+ FOSL2
948
+ FOXC1
949
+ FOXJ1
950
+ FOXJ3
951
+ FOXK1
952
+ FOXO3
953
+ FOXS1
954
+ FRK
955
+ FRMD3
956
+ FRMD5
957
+ FRMD8
958
+ FRS2
959
+ FRYL
960
+ FSIP1
961
+ FTH1P5
962
+ FTMT
963
+ FTO
964
+ FUBP1
965
+ FURIN
966
+ FUT1
967
+ FUT10
968
+ FUT11
969
+ FUT2
970
+ FXR2
971
+ FYN
972
+ FZD2
973
+ FZD9
974
+ GAB2
975
+ GABBR1
976
+ GABRB1
977
+ GALK2
978
+ GALNT14
979
+ GALT
980
+ GAPDHP29
981
+ GAPDHP41
982
+ GAS6-AS1
983
+ GATA2
984
+ GATA4
985
+ GATA5
986
+ GATAD2A
987
+ GATAD2B
988
+ GATSL3
989
+ GBF1
990
+ GCAT
991
+ GCH1
992
+ GCK
993
+ GDF11
994
+ GDF2
995
+ GDF5
996
+ GDF5OS
997
+ GDI2
998
+ GEM
999
+ GFM1
1000
+ GFPT1
1001
+ GFRAL
1002
+ GIMAP4
1003
+ GIP
1004
+ GIPR
1005
+ GIT2
1006
+ GJA1
1007
+ GLCE
1008
+ GLE1
1009
+ GLIS3
1010
+ GLS
1011
+ GLTP
1012
+ GLTPD1
1013
+ GLYAT
1014
+ GMDS
1015
+ GMDS-AS1
1016
+ GML
1017
+ GMPR
1018
+ GNAO1
1019
+ GNAS
1020
+ GNB1
1021
+ GNB4
1022
+ GNG11
1023
+ GNG7
1024
+ GOLGA1
1025
+ GOLGA4
1026
+ GOLPH3L
1027
+ GOPC
1028
+ GOSR2
1029
+ GPAT2
1030
+ GPATCH1
1031
+ GPATCH2
1032
+ GPATCH3
1033
+ GPATCH8
1034
+ GPBAR1
1035
+ GPBP1
1036
+ GPBP1L1
1037
+ GPD1
1038
+ GPI
1039
+ GPM6A
1040
+ GPN1
1041
+ GPN2
1042
+ GPR137B
1043
+ GPR157
1044
+ GPR20
1045
+ GPR3
1046
+ GPR75-ASB3
1047
+ GPR98
1048
+ GRIFIN
1049
+ GRIN2B
1050
+ GRK1
1051
+ GRM4
1052
+ GRM7
1053
+ GS1-251I9.4
1054
+ GSN
1055
+ GSS
1056
+ GTF2B
1057
+ GTF2I
1058
+ GTF3C1
1059
+ GTPBP10
1060
+ GUCY1A3
1061
+ GUCY1B3
1062
+ GXYLT1
1063
+ H19
1064
+ H1F0
1065
+ H1FNT
1066
+ HAPLN4
1067
+ HARS
1068
+ HARS2
1069
+ HAS3
1070
+ HAUS3
1071
+ HAUS4
1072
+ HAUS6
1073
+ HAUS6P2
1074
+ HAUS8
1075
+ HAX1
1076
+ HBP1
1077
+ HBS1L
1078
+ HCG23
1079
+ HCRTR2
1080
+ HDAC11
1081
+ HDAC7
1082
+ HDAC9
1083
+ HDGFRP3
1084
+ HDLBP
1085
+ HEATR5A
1086
+ HECTD4
1087
+ HELLS
1088
+ HERC4
1089
+ HEXIM1
1090
+ HEXIM2
1091
+ HEYL
1092
+ HFE
1093
+ HGFAC
1094
+ HHIPL1
1095
+ HIBADH
1096
+ HIBCH
1097
+ HIC1
1098
+ HIP1
1099
+ HIPK2
1100
+ HIST1H1A
1101
+ HIST1H1C
1102
+ HIST1H1T
1103
+ HIST1H2AB
1104
+ HIST1H2AC
1105
+ HIST1H2AG
1106
+ HIST1H2APS2
1107
+ HIST1H2BB
1108
+ HIST1H2BC
1109
+ HIST1H2BK
1110
+ HIST1H2BO
1111
+ HIST1H3B
1112
+ HIST1H3C
1113
+ HIST1H3J
1114
+ HIST1H4A
1115
+ HIST1H4B
1116
+ HIST1H4C
1117
+ HIVEP2
1118
+ HIVEP3
1119
+ HLA-B
1120
+ HLA-DQA1
1121
+ HLA-DQB1
1122
+ HLA-DRA
1123
+ HLA-DRB5
1124
+ HLA-DRB9
1125
+ HLA-U
1126
+ HLA-V
1127
+ HM13
1128
+ HM13-AS1
1129
+ HMGA1
1130
+ HMGA2
1131
+ HMGB1P48
1132
+ HMGB3P17
1133
+ HMGB3P18
1134
+ HMGN1
1135
+ HMGN2P25
1136
+ HNF1A-AS1
1137
+ HNRNPA3
1138
+ HNRNPFP1
1139
+ HOMER2
1140
+ HOMEZ
1141
+ HORMAD1
1142
+ HOTTIP
1143
+ HOXA11
1144
+ HOXA13
1145
+ HOXA3
1146
+ HOXB-AS3
1147
+ HOXB-AS4
1148
+ HOXB3
1149
+ HOXB7
1150
+ HOXC4
1151
+ HOXD-AS1
1152
+ HOXD1
1153
+ HOXD3
1154
+ HPS6
1155
+ HRCT1
1156
+ HRH1
1157
+ HSD17B6
1158
+ HSF2BP
1159
+ HSPA12A
1160
+ HSPA4
1161
+ HSPB7
1162
+ HTR1D
1163
+ HTR4
1164
+ HTRA1
1165
+ HTRA3
1166
+ HYI
1167
+ HYI-AS1
1168
+ IARS
1169
+ ICA1L
1170
+ ICMT
1171
+ ID1
1172
+ IDH2
1173
+ IER5L
1174
+ IGF1
1175
+ IGF1R
1176
+ IGF2BP2
1177
+ IGFBP3
1178
+ IGFBP7
1179
+ IGHMBP2
1180
+ IGKV1OR10-1
1181
+ IK
1182
+ IKZF4
1183
+ IL25
1184
+ IL6
1185
+ IMMT
1186
+ ING1
1187
+ INMT-FAM188B
1188
+ INO80
1189
+ INPP1
1190
+ INPP5A
1191
+ INPP5B
1192
+ INPP5F
1193
+ INSM2
1194
+ INSR
1195
+ INTS4
1196
+ IP6K2
1197
+ IPMK
1198
+ IPP
1199
+ IRAK1BP1
1200
+ IRF5
1201
+ IRF6
1202
+ IRS2
1203
+ IST1
1204
+ ISYNA1
1205
+ ITGA1
1206
+ ITGA2B
1207
+ ITGA9
1208
+ ITGAL
1209
+ ITGB5
1210
+ ITIH4
1211
+ IZUMO1
1212
+ JAG1
1213
+ JAZF1
1214
+ JMJD1C
1215
+ JMJD1C-AS1
1216
+ JPH2
1217
+ JTB
1218
+ JUP
1219
+ KALRN
1220
+ KANK1
1221
+ KANK2
1222
+ KANK3
1223
+ KANSL1
1224
+ KANSL3
1225
+ KAT2B
1226
+ KAT5
1227
+ KAT7
1228
+ KAZN
1229
+ KB-1184D12.1
1230
+ KB-1507C5.2
1231
+ KCNB1
1232
+ KCNH3
1233
+ KCNH4
1234
+ KCNJ11
1235
+ KCNK3
1236
+ KCNK5
1237
+ KCNK9
1238
+ KCNQ5
1239
+ KCNRG
1240
+ KCTD10
1241
+ KDM1A
1242
+ KDM4B
1243
+ KDM5A
1244
+ KDM6B
1245
+ KIAA0040
1246
+ KIAA0141
1247
+ KIAA0355
1248
+ KIAA0556
1249
+ KIAA0753
1250
+ KIAA1143
1251
+ KIAA1199
1252
+ KIAA1217
1253
+ KIAA1462
1254
+ KIAA1755
1255
+ KIF15
1256
+ KIF1B
1257
+ KIF23
1258
+ KIF26A
1259
+ KISS1
1260
+ KLB
1261
+ KLF14
1262
+ KLF16
1263
+ KLF2
1264
+ KLF7
1265
+ KLHL21
1266
+ KLHL25
1267
+ KLHL29
1268
+ KLHL2P1
1269
+ KLHL42
1270
+ KLK2
1271
+ KLK3
1272
+ KLLN
1273
+ KLRG1
1274
+ KMT2A
1275
+ KPNA1
1276
+ KPNA4
1277
+ KRT18P16
1278
+ KRT18P55
1279
+ KRT18P67
1280
+ KRT18P9
1281
+ KRT8P12
1282
+ KRT8P26
1283
+ KRTAP5-4
1284
+ KRTAP5-5
1285
+ KRTAP5-AS1
1286
+ L2HGDH
1287
+ LA16c-306E5.3
1288
+ LACTB
1289
+ LACTBL1
1290
+ LAMA5
1291
+ LAMB2
1292
+ LAMC1
1293
+ LAMTOR4
1294
+ LARP4
1295
+ LARP6
1296
+ LATS2
1297
+ LBX1-AS1
1298
+ LCA5L
1299
+ LCMT2
1300
+ LCORL
1301
+ LCTL
1302
+ LDB1
1303
+ LDLR
1304
+ LEF1
1305
+ LEF1-AS1
1306
+ LEPREL4
1307
+ LETM2
1308
+ LGALS9B
1309
+ LHFPL2
1310
+ LIG1
1311
+ LIG3
1312
+ LIMA1
1313
+ LIMD1
1314
+ LIMK1
1315
+ LIMK2
1316
+ LIN54
1317
+ LIN7B
1318
+ LINC00028
1319
+ LINC00208
1320
+ LINC00211
1321
+ LINC00311
1322
+ LINC00322
1323
+ LINC00342
1324
+ LINC00378
1325
+ LINC00393
1326
+ LINC00521
1327
+ LINC00536
1328
+ LINC00552
1329
+ LINC00671
1330
+ LINC00687
1331
+ LINC00839
1332
+ LINC00854
1333
+ LINC00880
1334
+ LINC00907
1335
+ LINC00910
1336
+ LINC00917
1337
+ LINC00961
1338
+ LINC01006
1339
+ LINC01023
1340
+ LINC01091
1341
+ LINC01116
1342
+ LINC01117
1343
+ LINC01122
1344
+ LINC01165
1345
+ LLPH
1346
+ LMAN1L
1347
+ LMCD1-AS1
1348
+ LMO1
1349
+ LMOD2
1350
+ LNPEP
1351
+ LOH12CR1
1352
+ LOXL1
1353
+ LOXL1-AS1
1354
+ LOXL4
1355
+ LPL
1356
+ LPXN
1357
+ LRBA
1358
+ LRCH1
1359
+ LRIG1
1360
+ LRP1
1361
+ LRP4
1362
+ LRP4-AS1
1363
+ LRRC10
1364
+ LRRC10B
1365
+ LRRC16A
1366
+ LRRC34
1367
+ LRRC37A4P
1368
+ LRRC38
1369
+ LRRC46
1370
+ LRRC49
1371
+ LRRC61
1372
+ LRRC66
1373
+ LRRC69
1374
+ LRRC8C
1375
+ LRRFIP1
1376
+ LRRFIP2
1377
+ LSM1
1378
+ LSM12
1379
+ LSM2
1380
+ LSM6P2
1381
+ LSMD1
1382
+ LSP1
1383
+ LTBP1
1384
+ LTBP2
1385
+ LTBP3
1386
+ LTBP4
1387
+ LUCAT1
1388
+ LUZP1
1389
+ LYPLAL1
1390
+ LZIC
1391
+ M6PR
1392
+ MACF1
1393
+ MACROD1
1394
+ MAD1L1
1395
+ MADD
1396
+ MAEA
1397
+ MALAT1
1398
+ MALRD1
1399
+ MAMSTR
1400
+ MAN2A2
1401
+ MANBA
1402
+ MANEAL
1403
+ MAP1A
1404
+ MAP1B
1405
+ MAP2
1406
+ MAP2K1
1407
+ MAP2K2
1408
+ MAP3K1
1409
+ MAP3K19
1410
+ MAP4
1411
+ MAP6D1
1412
+ MAPK4
1413
+ MAPK7
1414
+ MAPKAP1
1415
+ MAPKAPK5-AS1
1416
+ MAPKBP1
1417
+ MAPT
1418
+ MAPT-AS1
1419
+ MARK2P10
1420
+ MARK2P11
1421
+ MARK3
1422
+ MARK4
1423
+ MAS1L
1424
+ MAS1LP1
1425
+ MAST2
1426
+ MAST4
1427
+ MAU2
1428
+ MBD5
1429
+ MBNL1
1430
+ MBNL2
1431
+ MC1R
1432
+ MCC
1433
+ MCF2L
1434
+ MCL1
1435
+ MCM7
1436
+ MCPH1
1437
+ MCRS1
1438
+ MDK
1439
+ MDM4
1440
+ MECOM
1441
+ MECR
1442
+ MED13L
1443
+ MED18
1444
+ MED19
1445
+ MED21
1446
+ MED8
1447
+ MEF2A
1448
+ MEIS1
1449
+ MERTK
1450
+ MESDC1
1451
+ MESDC2
1452
+ METTL21A
1453
+ MFAP1
1454
+ MFAP2
1455
+ MFAP4
1456
+ MFSD1
1457
+ MFSD6
1458
+ MGA
1459
+ MGEA5
1460
+ MGRN1
1461
+ MIA2
1462
+ MICAL3
1463
+ MIEF2
1464
+ MIER1
1465
+ MIER3
1466
+ MILR1
1467
+ MIR1208
1468
+ MIR1263
1469
+ MIR146B
1470
+ MIR148A
1471
+ MIR3143
1472
+ MIR3193
1473
+ MIR320D1
1474
+ MIR34A
1475
+ MIR3913-1
1476
+ MIR3927
1477
+ MIR4421
1478
+ MIR4425
1479
+ MIR4435-1HG
1480
+ MIR4443
1481
+ MIR4488
1482
+ MIR4502
1483
+ MIR4514
1484
+ MIR451B
1485
+ MIR600HG
1486
+ MKLN1
1487
+ MLF1
1488
+ MLH1
1489
+ MLH3
1490
+ MLIP
1491
+ MLLT10
1492
+ MLLT3
1493
+ MLTK
1494
+ MLXIP
1495
+ MLXIPL
1496
+ MMAB
1497
+ MMACHC
1498
+ MME
1499
+ MMP14
1500
+ MMP23B
1501
+ MOB2
1502
+ MORC3
1503
+ MORF4L1
1504
+ MOV10
1505
+ MPDU1
1506
+ MPHOSPH9
1507
+ MPI
1508
+ MPL
1509
+ MPP6
1510
+ MPPE1P1
1511
+ MPPED2
1512
+ MRAS
1513
+ MRC2
1514
+ MRPL10
1515
+ MRPL20
1516
+ MRPL23-AS1
1517
+ MRPL33
1518
+ MRPL35
1519
+ MRPL38
1520
+ MRPL4
1521
+ MRPL40P1
1522
+ MRPL43
1523
+ MRPL50P2
1524
+ MRPS16
1525
+ MRPS27
1526
+ MRPS31
1527
+ MRVI1
1528
+ MSH5
1529
+ MSI1
1530
+ MSI2
1531
+ MSRA
1532
+ MSS51
1533
+ MTAP
1534
+ MTAPP1
1535
+ MTCH2
1536
+ MTCO3P1
1537
+ MTF1
1538
+ MTHFR
1539
+ MTND1P22
1540
+ MTNR1B
1541
+ MUC8
1542
+ MVK
1543
+ MXD3
1544
+ MXD4
1545
+ MXI1
1546
+ MXRA7
1547
+ MXRA8
1548
+ MYBPC2
1549
+ MYBPC3
1550
+ MYBPH
1551
+ MYEOV
1552
+ MYH11
1553
+ MYH6
1554
+ MYH7
1555
+ MYH7B
1556
+ MYL3
1557
+ MYLK2
1558
+ MYNN
1559
+ MYO1C
1560
+ MYO1D
1561
+ MYO1E
1562
+ MYO1H
1563
+ MYO9B
1564
+ MYRFL
1565
+ MYT1
1566
+ N4BP2
1567
+ NAA16
1568
+ NAA25
1569
+ NAA40
1570
+ NAA60
1571
+ NAB1
1572
+ NACA
1573
+ NADK
1574
+ NAE1
1575
+ NAGLU
1576
+ NASP
1577
+ NAT10
1578
+ NAV1
1579
+ NBEA
1580
+ NBEAL1
1581
+ NBR1
1582
+ NBR2
1583
+ NCALD
1584
+ NCAM1
1585
+ NCAN
1586
+ NCAPH
1587
+ NCOA7
1588
+ NCOR2
1589
+ NCR3LG1
1590
+ NDRG4
1591
+ NDUFA2
1592
+ NDUFA5P5
1593
+ NDUFAF6
1594
+ NDUFS3
1595
+ NEAT1
1596
+ NEBL
1597
+ NEDD4L
1598
+ NEK10
1599
+ NEK6
1600
+ NEK7
1601
+ NEK9
1602
+ NELFCD
1603
+ NEPNP
1604
+ NEURL3
1605
+ NEXN-AS1
1606
+ NFAT5
1607
+ NFATC2
1608
+ NFATC4
1609
+ NFE2L1
1610
+ NFE2L2
1611
+ NFKB2
1612
+ NFKBIA
1613
+ NFU1
1614
+ NICN1
1615
+ NIN
1616
+ NMB
1617
+ NME2P1
1618
+ NME7
1619
+ NME9
1620
+ NMRAL1
1621
+ NMT1
1622
+ NOB1
1623
+ NOC3L
1624
+ NOL12
1625
+ NOL8
1626
+ NOLC1
1627
+ NOS2P3
1628
+ NOS3
1629
+ NOTCH3
1630
+ NOTCH4
1631
+ NOTO
1632
+ NOV
1633
+ NOX4
1634
+ NPAS2
1635
+ NPEPL1
1636
+ NPHS2
1637
+ NPNT
1638
+ NPPA
1639
+ NPPA-AS1
1640
+ NPPB
1641
+ NPR1
1642
+ NPR3
1643
+ NPW
1644
+ NQO1
1645
+ NR1H3
1646
+ NR2F2-AS1
1647
+ NR3C2
1648
+ NRAP
1649
+ NRBF2
1650
+ NRCAM
1651
+ NRG1
1652
+ NRG4
1653
+ NRIP1
1654
+ NRIP3
1655
+ NRXN1
1656
+ NSUN5P1
1657
+ NT5C2
1658
+ NT5DC2
1659
+ NTHL1
1660
+ NTN4
1661
+ NUCB2
1662
+ NUDC
1663
+ NUDT13
1664
+ NUDT3
1665
+ NUP160
1666
+ NUP210L
1667
+ NUS1
1668
+ NXPE3
1669
+ OBFC1
1670
+ OBSL1
1671
+ OCIAD1
1672
+ OCIAD2
1673
+ ODF2
1674
+ ODF2L
1675
+ OLA1
1676
+ OPLAH
1677
+ OPRM1
1678
+ OR10AD1
1679
+ OR11A1
1680
+ OR2H1
1681
+ OR2I1P
1682
+ OR4A11P
1683
+ OR4A13P
1684
+ OR4A14P
1685
+ OR4A15
1686
+ OR4A16
1687
+ OR4A17P
1688
+ OR4A2P
1689
+ OR4A3P
1690
+ OR4A40P
1691
+ OR4A41P
1692
+ OR4A42P
1693
+ OR4A43P
1694
+ OR4A44P
1695
+ OR4A45P
1696
+ OR4A46P
1697
+ OR4A48P
1698
+ OR4A4P
1699
+ OR4A5
1700
+ OR4A50P
1701
+ OR4A6P
1702
+ OR4A7P
1703
+ OR4A8P
1704
+ OR4A9P
1705
+ OR4C10P
1706
+ OR4C11
1707
+ OR4C12
1708
+ OR4C13
1709
+ OR4C14P
1710
+ OR4C15
1711
+ OR4C16
1712
+ OR4C1P
1713
+ OR4C2P
1714
+ OR4C46
1715
+ OR4C50P
1716
+ OR4C6
1717
+ OR4C7P
1718
+ OR4C9P
1719
+ OR4P1P
1720
+ OR4P4
1721
+ OR4R1P
1722
+ OR4R2P
1723
+ OR4S2
1724
+ OR4V1P
1725
+ OR4X7P
1726
+ OR51E1
1727
+ OR52E3P
1728
+ OR5AZ1P
1729
+ OR5B12
1730
+ OR5B2
1731
+ OR5B21
1732
+ OR5B3
1733
+ OR5BA1P
1734
+ OR5BS1P
1735
+ OR5D13
1736
+ OR5D14
1737
+ OR5D15P
1738
+ OR5D16
1739
+ OR5D17P
1740
+ OR5D2P
1741
+ OR5D3P
1742
+ OR5L1
1743
+ OR5L2
1744
+ OR5V1
1745
+ OR8I1P
1746
+ OR8S1
1747
+ OR8T1P
1748
+ ORAOV1
1749
+ ORC4
1750
+ OS9
1751
+ OSBPL2
1752
+ OSBPL7
1753
+ OSBPL9
1754
+ OSGIN2
1755
+ OTUD6B
1756
+ OTX1
1757
+ P2RY6
1758
+ P4HA1
1759
+ P4HA2
1760
+ P4HTM
1761
+ PABPC4
1762
+ PACSIN3
1763
+ PALLD
1764
+ PALM2-AKAP2
1765
+ PAPPA2
1766
+ PAQR5
1767
+ PAWR
1768
+ PAX2
1769
+ PAX6
1770
+ PBX1
1771
+ PBX3
1772
+ PBX4
1773
+ PCCB
1774
+ PCDH12
1775
+ PCDH17
1776
+ PCDH18
1777
+ PCDHA1
1778
+ PCNT
1779
+ PCNXL3
1780
+ PCOLCE2
1781
+ PCSK7
1782
+ PDCD11
1783
+ PDDC1
1784
+ PDE10A
1785
+ PDE11A
1786
+ PDE1A
1787
+ PDE3A
1788
+ PDE3B
1789
+ PDE5A
1790
+ PDE8A
1791
+ PDGFC
1792
+ PDGFRL
1793
+ PDIA3
1794
+ PDILT
1795
+ PDLIM2
1796
+ PDLIM5
1797
+ PDP2
1798
+ PDXDC2P
1799
+ PEPD
1800
+ PER1
1801
+ PEX3
1802
+ PFKFB2
1803
+ PFKM
1804
+ PFN1P11
1805
+ PFN2
1806
+ PGAM1P2
1807
+ PGLYRP2
1808
+ PGR
1809
+ PHACTR1
1810
+ PHACTR2
1811
+ PHACTR4
1812
+ PHC1
1813
+ PHC2
1814
+ PHC3
1815
+ PHF13
1816
+ PHF19
1817
+ PHF23
1818
+ PHIP
1819
+ PHKG1
1820
+ PHKG2
1821
+ PHLPP2
1822
+ PHTF2
1823
+ PIAS1
1824
+ PIDD
1825
+ PIEZO1P2
1826
+ PIEZO2
1827
+ PIGL
1828
+ PIGV
1829
+ PIK3C2B
1830
+ PIK3IP1
1831
+ PIK3R3
1832
+ PIP4K2A
1833
+ PIP4K2C
1834
+ PIP5K1B
1835
+ PISD
1836
+ PITPNM2
1837
+ PKD1L3
1838
+ PKD2L1
1839
+ PKD2L2
1840
+ PKHD1
1841
+ PKN2
1842
+ PLA2G1B
1843
+ PLA2G3
1844
+ PLA2G4B
1845
+ PLCB1
1846
+ PLCB3
1847
+ PLCD3
1848
+ PLCD4
1849
+ PLCE1
1850
+ PLCXD2
1851
+ PLD3
1852
+ PLEC
1853
+ PLEKHA1
1854
+ PLEKHA7
1855
+ PLEKHG1
1856
+ PLEKHH1
1857
+ PLEKHJ1
1858
+ PLEKHM1
1859
+ PLEKHS1
1860
+ PLIN2
1861
+ PLK2
1862
+ PLVAP
1863
+ PLXDC2
1864
+ PLXNB2
1865
+ PLXNC1
1866
+ PMFBP1
1867
+ PMS2P3
1868
+ PNKD
1869
+ PNPLA8
1870
+ PNPT1
1871
+ POC1B
1872
+ POC5
1873
+ PODXL
1874
+ POGZ
1875
+ POLD3
1876
+ POLDIP2
1877
+ POLE3
1878
+ POLG2
1879
+ POLI
1880
+ POLN
1881
+ POLR1A
1882
+ POLR3C
1883
+ POM121C
1884
+ POP4
1885
+ POU2F1
1886
+ PPAP2B
1887
+ PPARG
1888
+ PPCS
1889
+ PPHLN1
1890
+ PPIAP16
1891
+ PPIEL
1892
+ PPIL1
1893
+ PPIP5K1
1894
+ PPL
1895
+ PPM1A
1896
+ PPM1E
1897
+ PPP1R1C
1898
+ PPP2R1B
1899
+ PPP2R2A
1900
+ PPP2R2D
1901
+ PPP2R4
1902
+ PPP2R5E
1903
+ PPP3CA
1904
+ PPP3CB
1905
+ PPP6C
1906
+ PPRC1
1907
+ PPT2
1908
+ PPT2-EGFL8
1909
+ PPTC7
1910
+ PRADC1
1911
+ PRADC1P1
1912
+ PRDM11
1913
+ PRDM16
1914
+ PRDM6
1915
+ PRDX1
1916
+ PREX1
1917
+ PREX2
1918
+ PRICKLE1
1919
+ PRIM1
1920
+ PRIM2
1921
+ PRKAA1
1922
+ PRKAG2
1923
+ PRKAR2A
1924
+ PRKCD
1925
+ PRKCE
1926
+ PRKD1
1927
+ PRKD3
1928
+ PRMT5
1929
+ PRMT5-AS1
1930
+ PROM1
1931
+ PROX2
1932
+ PRPF3
1933
+ PRPF40A
1934
+ PRPF40B
1935
+ PRPH2
1936
+ PRR14
1937
+ PRR14L
1938
+ PRR16
1939
+ PRRC2A
1940
+ PRRT1
1941
+ PRSS16
1942
+ PRSS42
1943
+ PRSS50
1944
+ PRTFDC1
1945
+ PRUNE
1946
+ PSMA1
1947
+ PSMB4
1948
+ PSMB7
1949
+ PSMC3
1950
+ PSMD11
1951
+ PSMD5
1952
+ PSMD5-AS1
1953
+ PSMD6
1954
+ PSMD6-AS2
1955
+ PSMD9
1956
+ PSME4
1957
+ PSMG1
1958
+ PSMG2
1959
+ PSPH
1960
+ PTCD2
1961
+ PTCD3
1962
+ PTEN
1963
+ PTGER4
1964
+ PTGES3
1965
+ PTK2
1966
+ PTP4A2P1
1967
+ PTPN11
1968
+ PTPN3
1969
+ PTPRD
1970
+ PTPRJ
1971
+ PTPRN2
1972
+ PTPRU
1973
+ PTRF
1974
+ PTRH1
1975
+ PUSL1
1976
+ PXMP4
1977
+ PYY
1978
+ QPCTL
1979
+ QRICH1
1980
+ QSOX1
1981
+ QSOX2
1982
+ QTRT1
1983
+ R3HCC1L
1984
+ RAB11FIP5
1985
+ RAB13
1986
+ RAB1A
1987
+ RAB24
1988
+ RAB34
1989
+ RAB3D
1990
+ RAB5A
1991
+ RAB5B
1992
+ RABEPK
1993
+ RABGAP1
1994
+ RABGAP1L
1995
+ RAC1P3
1996
+ RAD1P1
1997
+ RAD51C
1998
+ RAD52
1999
+ RAI1
2000
+ RALGAPA1
2001
+ RAMP2
2002
+ RAPGEF5
2003
+ RAPH1
2004
+ RAPSN
2005
+ RARG
2006
+ RARRES1
2007
+ RASIP1
2008
+ RASL11A
2009
+ RBBP4P3
2010
+ RBFOX1
2011
+ RBM23
2012
+ RBM33
2013
+ RBM47
2014
+ RBMS1
2015
+ RBMS3
2016
+ RBP3
2017
+ RBPMS
2018
+ RC3H2
2019
+ RCC1
2020
+ RCN1
2021
+ RDH10
2022
+ REEP1
2023
+ REEP3
2024
+ RELA
2025
+ RELT
2026
+ REM1
2027
+ REPIN1
2028
+ RERE
2029
+ RERG
2030
+ RERGL
2031
+ REXO1
2032
+ RFFL
2033
+ RFT1
2034
+ RFX6
2035
+ RGL3
2036
+ RGS17
2037
+ RGS19
2038
+ RGS3
2039
+ RGS6
2040
+ RHBDD1
2041
+ RHOA
2042
+ RHOC
2043
+ RHOT2
2044
+ RHPN2
2045
+ RILPL1
2046
+ RILPL2
2047
+ RIMKLA
2048
+ RIN3
2049
+ RIPK3
2050
+ RN7SKP135
2051
+ RN7SKP142
2052
+ RN7SKP145
2053
+ RN7SKP15
2054
+ RN7SKP208
2055
+ RN7SL158P
2056
+ RN7SL165P
2057
+ RN7SL197P
2058
+ RN7SL210P
2059
+ RN7SL26P
2060
+ RN7SL309P
2061
+ RN7SL354P
2062
+ RN7SL363P
2063
+ RN7SL44P
2064
+ RN7SL473P
2065
+ RN7SL549P
2066
+ RN7SL591P
2067
+ RN7SL600P
2068
+ RN7SL664P
2069
+ RN7SL696P
2070
+ RN7SL769P
2071
+ RN7SL825P
2072
+ RN7SL837P
2073
+ RN7SL89P
2074
+ RNA5SP130
2075
+ RNA5SP220
2076
+ RNA5SP375
2077
+ RNA5SP444
2078
+ RNASEH2B
2079
+ RNASEH2B-AS1
2080
+ RNASEH2C
2081
+ RND2
2082
+ RNF11
2083
+ RNF115
2084
+ RNF123
2085
+ RNF126
2086
+ RNF130
2087
+ RNF185
2088
+ RNF207
2089
+ RNF215
2090
+ RNF25
2091
+ RNF39
2092
+ RNF4
2093
+ RNF40
2094
+ RNU1-38P
2095
+ RNU1-46P
2096
+ RNU1-61P
2097
+ RNU1-88P
2098
+ RNU1-96P
2099
+ RNU2-48P
2100
+ RNU2-8P
2101
+ RNU4-1
2102
+ RNU4-17P
2103
+ RNU4-2
2104
+ RNU4-35P
2105
+ RNU4-76P
2106
+ RNU4-77P
2107
+ RNU4-90P
2108
+ RNU4ATAC14P
2109
+ RNU6-1032P
2110
+ RNU6-1088P
2111
+ RNU6-1145P
2112
+ RNU6-1148P
2113
+ RNU6-11P
2114
+ RNU6-1212P
2115
+ RNU6-1217P
2116
+ RNU6-158P
2117
+ RNU6-192P
2118
+ RNU6-205P
2119
+ RNU6-338P
2120
+ RNU6-384P
2121
+ RNU6-416P
2122
+ RNU6-450P
2123
+ RNU6-45P
2124
+ RNU6-510P
2125
+ RNU6-634P
2126
+ RNU6-682P
2127
+ RNU6-70P
2128
+ RNU6-718P
2129
+ RNU6-758P
2130
+ RNU6-775P
2131
+ RNU6-782P
2132
+ RNU6-802P
2133
+ RNU6-872P
2134
+ RNU6-939P
2135
+ RNU6ATAC14P
2136
+ RNU6ATAC4P
2137
+ RNU7-160P
2138
+ RNU7-179P
2139
+ RNU7-26P
2140
+ RNU7-2P
2141
+ RNU7-97P
2142
+ RNY1P8
2143
+ RNY4P9
2144
+ RP1-130H16.18
2145
+ RP1-137K24.1
2146
+ RP1-140A9.1
2147
+ RP1-144C9.2
2148
+ RP1-158P9.1
2149
+ RP1-159A19.3
2150
+ RP1-159A19.4
2151
+ RP1-166H1.2
2152
+ RP1-170O19.14
2153
+ RP1-172I22.1
2154
+ RP1-178F10.1
2155
+ RP1-178F10.3
2156
+ RP1-179N16.6
2157
+ RP1-184J9.2
2158
+ RP1-186E20.1
2159
+ RP1-20N2.6
2160
+ RP1-212P9.2
2161
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2162
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2163
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2164
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2165
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2166
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2167
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2168
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2169
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2170
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2171
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2172
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2173
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2174
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2175
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2176
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2177
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2178
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2179
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2180
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2181
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2182
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2183
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2184
+ RP11-103J8.1
2185
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2186
+ RP11-1055B8.3
2187
+ RP11-1055B8.4
2188
+ RP11-1055B8.6
2189
+ RP11-1055B8.7
2190
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2191
+ RP11-1072C15.3
2192
+ RP11-1072C15.7
2193
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2194
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2195
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2196
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2197
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2198
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2199
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2200
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2201
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2202
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2203
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2204
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2205
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2206
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2207
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2208
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2209
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2210
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2211
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2212
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2213
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2214
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2215
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2216
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2217
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2218
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2219
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2220
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2221
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2222
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2223
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2224
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2225
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2226
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2227
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2228
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2229
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2230
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2231
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2232
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2233
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2234
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2235
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2236
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2237
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2238
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2239
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2240
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2241
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2242
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2243
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2244
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2245
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2246
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2247
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2248
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2249
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2250
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2251
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2252
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2253
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2254
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2255
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2256
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2257
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2258
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2259
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2260
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2261
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2262
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2263
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2264
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2265
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2266
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2267
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2268
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2269
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2270
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2271
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2272
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2273
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2274
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2275
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2276
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2277
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2278
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2279
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2280
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2281
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2282
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2283
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2284
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2285
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2286
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2287
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2288
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2289
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2290
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2291
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2292
+ RP11-259K5.1
2293
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2294
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2295
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2296
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2297
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2298
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2299
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2300
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2301
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2302
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2303
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2304
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2305
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2306
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2307
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2308
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2309
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2310
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2311
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2312
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2313
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2314
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2315
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2316
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2317
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2318
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2319
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2320
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2321
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2322
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2323
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2324
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2325
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2326
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2327
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2328
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2329
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2330
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2331
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2332
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2333
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2334
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2335
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2336
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2337
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2338
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2339
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2340
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2341
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2342
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2343
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2344
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2345
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2346
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2347
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2348
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2349
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2350
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2351
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2352
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2353
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2354
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2355
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2356
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2357
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2358
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2359
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2360
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2361
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2362
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2363
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2364
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2365
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2366
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2367
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2368
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2369
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2370
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2371
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2372
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2373
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2374
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2375
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2376
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2377
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2378
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2379
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2380
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2381
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2382
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2383
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2384
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2385
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2386
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2387
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2388
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2389
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2390
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2391
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2392
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2393
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2394
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2395
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2396
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2397
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2398
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2399
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2400
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2401
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2402
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2403
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2404
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2405
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2406
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2407
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2408
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2409
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2410
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2411
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2412
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2413
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2414
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2415
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2416
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2417
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2418
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2419
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2420
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2421
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2422
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2423
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2424
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2425
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2426
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2427
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2428
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2429
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2430
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2431
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2432
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2433
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2434
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2435
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2436
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2437
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2438
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2439
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2440
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2441
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2442
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2443
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2444
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2445
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2446
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2447
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2448
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2449
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2450
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2451
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2452
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2453
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2454
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2455
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2456
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2457
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2458
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2459
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2460
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2461
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2462
+ RP11-548K12.5
2463
+ RP11-54A4.2
2464
+ RP11-552F3.12
2465
+ RP11-554D13.1
2466
+ RP11-556I14.1
2467
+ RP11-556I14.2
2468
+ RP11-563P16.1
2469
+ RP11-567L7.6
2470
+ RP11-56P9.10
2471
+ RP11-56P9.11
2472
+ RP11-56P9.4
2473
+ RP11-56P9.5
2474
+ RP11-56P9.8
2475
+ RP11-571M6.1
2476
+ RP11-572O17.1
2477
+ RP11-573J24.1
2478
+ RP11-574H6.1
2479
+ RP11-574K11.31
2480
+ RP11-574M7.1
2481
+ RP11-574M7.2
2482
+ RP11-57G10.1
2483
+ RP11-57G10.8
2484
+ RP11-57K17.1
2485
+ RP11-582E3.2
2486
+ RP11-582E3.5
2487
+ RP11-588K22.2
2488
+ RP11-599B13.6
2489
+ RP11-599B13.8
2490
+ RP11-5P18.3
2491
+ RP11-600F24.7
2492
+ RP11-603J24.4
2493
+ RP11-60A8.2
2494
+ RP11-611E13.2
2495
+ RP11-613D13.4
2496
+ RP11-615I16.1
2497
+ RP11-616M22.7
2498
+ RP11-61F5.1
2499
+ RP11-61G23.1
2500
+ RP11-61N20.3
2501
+ RP11-61O1.1
2502
+ RP11-626A1.1
2503
+ RP11-626H12.1
2504
+ RP11-629G13.1
2505
+ RP11-62C3.6
2506
+ RP11-630I5.1
2507
+ RP11-638I2.4
2508
+ RP11-654D12.2
2509
+ RP11-655C2.3
2510
+ RP11-65J21.4
2511
+ RP11-664H17.1
2512
+ RP11-665G4.1
2513
+ RP11-674C21.9
2514
+ RP11-676F20.1
2515
+ RP11-680F20.6
2516
+ RP11-684B20.1
2517
+ RP11-691N7.6
2518
+ RP11-694I15.7
2519
+ RP11-69E11.4
2520
+ RP11-69G7.1
2521
+ RP11-6J21.2
2522
+ RP11-6N13.1
2523
+ RP11-6N17.1
2524
+ RP11-6N17.2
2525
+ RP11-707M1.1
2526
+ RP11-707O23.5
2527
+ RP11-714L20.1
2528
+ RP11-716O23.1
2529
+ RP11-716O23.2
2530
+ RP11-722P11.4
2531
+ RP11-724N1.1
2532
+ RP11-72H11.1
2533
+ RP11-72M10.4
2534
+ RP11-734C14.2
2535
+ RP11-734K2.4
2536
+ RP11-734K21.4
2537
+ RP11-750H9.5
2538
+ RP11-752L20.1
2539
+ RP11-758M4.1
2540
+ RP11-758M4.4
2541
+ RP11-761I4.3
2542
+ RP11-76N22.2
2543
+ RP11-775B15.2
2544
+ RP11-775C24.3
2545
+ RP11-778J16.3
2546
+ RP11-779O18.1
2547
+ RP11-779O18.2
2548
+ RP11-779O18.3
2549
+ RP11-77K12.1
2550
+ RP11-77K12.4
2551
+ RP11-788M5.3
2552
+ RP11-793I11.1
2553
+ RP11-795H16.2
2554
+ RP11-795H16.3
2555
+ RP11-798K3.2
2556
+ RP11-79J24.1
2557
+ RP11-79M21.3
2558
+ RP11-79P5.3
2559
+ RP11-7F17.5
2560
+ RP11-800A3.7
2561
+ RP11-805L22.1
2562
+ RP11-805L22.2
2563
+ RP11-805L22.3
2564
+ RP11-80K21.3
2565
+ RP11-816J6.3
2566
+ RP11-81K2.1
2567
+ RP11-82K18.2
2568
+ RP11-83C7.1
2569
+ RP11-855O10.3
2570
+ RP11-87C12.2
2571
+ RP11-87C12.5
2572
+ RP11-890B15.2
2573
+ RP11-890B15.3
2574
+ RP11-894J14.5
2575
+ RP11-89M16.1
2576
+ RP11-90P5.2
2577
+ RP11-950C14.7
2578
+ RP11-95P13.2
2579
+ RP11-95P2.1
2580
+ RP11-96A1.5
2581
+ RP11-973H7.5
2582
+ RP11-981P6.1
2583
+ RP11-983P16.4
2584
+ RP11-99J16__A.2
2585
+ RP11-9M16.2
2586
+ RP13-487K5.1
2587
+ RP13-650G11.1
2588
+ RP13-923O23.6
2589
+ RP1L1
2590
+ RP3-323P13.2
2591
+ RP3-331H24.5
2592
+ RP3-332B22.1
2593
+ RP3-400N23.6
2594
+ RP3-473L9.4
2595
+ RP3-495K2.1
2596
+ RP3-512B11.3
2597
+ RP3-522D1.2
2598
+ RP3-522J7.6
2599
+ RP4-584D14.5
2600
+ RP4-605O3.4
2601
+ RP4-655J12.4
2602
+ RP4-663N10.1
2603
+ RP4-673D20.4
2604
+ RP4-680D5.2
2605
+ RP4-680D5.4
2606
+ RP4-710M3.1
2607
+ RP4-712E4.1
2608
+ RP4-712E4.2
2609
+ RP4-753D5.3
2610
+ RP4-758J18.13
2611
+ RP4-758J18.2
2612
+ RP5-837J1.2
2613
+ RP5-850O15.4
2614
+ RP5-882C2.2
2615
+ RP5-884M6.1
2616
+ RP5-890E16.2
2617
+ RP5-890O3.3
2618
+ RP5-894D12.3
2619
+ RP5-905G11.3
2620
+ RP5-968P14.2
2621
+ RP5-991G20.1
2622
+ RPL12P8
2623
+ RPL13
2624
+ RPL17P12
2625
+ RPL17P2
2626
+ RPL17P50
2627
+ RPL21P107
2628
+ RPL21P42
2629
+ RPL22
2630
+ RPL24
2631
+ RPL24P7
2632
+ RPL27A
2633
+ RPL31P57
2634
+ RPL35P2
2635
+ RPL35P4
2636
+ RPL37A
2637
+ RPL39P5
2638
+ RPL6
2639
+ RPL6P8
2640
+ RPL7
2641
+ RPL7P60
2642
+ RPLP0P2
2643
+ RPLP2
2644
+ RPRD2
2645
+ RPS17P1
2646
+ RPS17P5
2647
+ RPS20P2
2648
+ RPS23P2
2649
+ RPS26
2650
+ RPS26P8
2651
+ RPS27
2652
+ RPS27L
2653
+ RPS27P25
2654
+ RPS4XP18
2655
+ RPS6KA4
2656
+ RPS6KL1
2657
+ RPS7
2658
+ RQCD1
2659
+ RRAGA
2660
+ RRAS
2661
+ RREB1
2662
+ RRP1B
2663
+ RSBN1L
2664
+ RSBN1L-AS1
2665
+ RSF1
2666
+ RSL24D1P5
2667
+ RSRC1
2668
+ RTEL1-TNFRSF6B
2669
+ RTN4
2670
+ RXFP1
2671
+ RYK
2672
+ S100A2
2673
+ S100A4
2674
+ S100A5
2675
+ SAE1
2676
+ SARDH
2677
+ SARM1
2678
+ SARNP
2679
+ SARS2
2680
+ SBF2
2681
+ SBF2-AS1
2682
+ SBNO1
2683
+ SCAF1
2684
+ SCAI
2685
+ SCAMP2
2686
+ SCAND2P
2687
+ SCFD2
2688
+ SCGN
2689
+ SCMH1
2690
+ SCN10A
2691
+ SCN2A
2692
+ SCYL1
2693
+ SDCCAG8
2694
+ SEC24C
2695
+ SEC31A
2696
+ SECISBP2L
2697
+ SEMA3C
2698
+ SEMA4A
2699
+ SEMA4B
2700
+ SENP1
2701
+ SENP2
2702
+ SENP3
2703
+ SENP3-EIF4A1
2704
+ SENP7
2705
+ SEPT9
2706
+ SETBP1
2707
+ SETD1A
2708
+ SETD6
2709
+ SETD8
2710
+ SETDB1
2711
+ SF3A1
2712
+ SF3A2
2713
+ SF3A3
2714
+ SFI1
2715
+ SFMBT1
2716
+ SFN
2717
+ SFTA1P
2718
+ SGCB
2719
+ SGCD
2720
+ SGIP1
2721
+ SGMS1
2722
+ SGSM3
2723
+ SH2B3
2724
+ SH2D6
2725
+ SH3BGR
2726
+ SH3PXD2A
2727
+ SH3TC2
2728
+ SHARPIN
2729
+ SHB
2730
+ SHBG
2731
+ SHC1P2
2732
+ SHKBP1
2733
+ SHMT1
2734
+ SHROOM3
2735
+ SIDT2
2736
+ SIGMAR1
2737
+ SIK1
2738
+ SIK2
2739
+ SIK3
2740
+ SIPA1
2741
+ SIRT1
2742
+ SIRT4
2743
+ SKA2
2744
+ SKAP1
2745
+ SKI
2746
+ SLAIN2
2747
+ SLBP
2748
+ SLC10A4
2749
+ SLC10A6
2750
+ SLC12A2
2751
+ SLC12A9
2752
+ SLC14A2
2753
+ SLC16A1
2754
+ SLC16A1-AS1
2755
+ SLC17A1
2756
+ SLC17A2
2757
+ SLC17A3
2758
+ SLC17A4
2759
+ SLC19A1
2760
+ SLC20A2
2761
+ SLC22A17
2762
+ SLC22A2
2763
+ SLC22A3
2764
+ SLC22A4
2765
+ SLC22A5
2766
+ SLC22A7
2767
+ SLC24A3
2768
+ SLC25A15
2769
+ SLC25A20
2770
+ SLC25A22
2771
+ SLC25A26
2772
+ SLC25A37
2773
+ SLC25A5P9
2774
+ SLC26A4
2775
+ SLC26A4-AS1
2776
+ SLC26A7
2777
+ SLC27A3
2778
+ SLC27A6
2779
+ SLC29A1
2780
+ SLC2A4
2781
+ SLC2A9
2782
+ SLC35D1
2783
+ SLC35E2
2784
+ SLC35E2B
2785
+ SLC35F1
2786
+ SLC39A1
2787
+ SLC39A12
2788
+ SLC39A13
2789
+ SLC39A8
2790
+ SLC44A4
2791
+ SLC45A1
2792
+ SLC45A4
2793
+ SLC4A1
2794
+ SLC4A10
2795
+ SLC4A1AP
2796
+ SLC4A7
2797
+ SLC5A1
2798
+ SLC5A10
2799
+ SLC5A11
2800
+ SLC7A1
2801
+ SLC7A2
2802
+ SLC7A6OS
2803
+ SLC8A1
2804
+ SLC9A3R2
2805
+ SLC9A9
2806
+ SLC9B1
2807
+ SLC9B2
2808
+ SLCO3A1
2809
+ SLFNL1
2810
+ SLIT3
2811
+ SLMAP
2812
+ SLX4IP
2813
+ SMAD3
2814
+ SMARCC1
2815
+ SMARCD1
2816
+ SMCR8
2817
+ SMEK2
2818
+ SMG6
2819
+ SMNDC1
2820
+ SMOC2
2821
+ SMOX
2822
+ SMURF2
2823
+ SMYD5
2824
+ SND1
2825
+ SNF8
2826
+ SNORA26
2827
+ SNORA32
2828
+ SNORA40
2829
+ SNORA7
2830
+ SNORA70
2831
+ SNORD112
2832
+ SNRNP200
2833
+ SNRNP70
2834
+ SNRPD2
2835
+ SNRPGP16
2836
+ SNRPGP19
2837
+ SNTB2
2838
+ SNTG1
2839
+ SNX11
2840
+ SNX16
2841
+ SNX19
2842
+ SNX31
2843
+ SORBS3
2844
+ SORCS3
2845
+ SOS2
2846
+ SOX13
2847
+ SOX6
2848
+ SOX7
2849
+ SP1
2850
+ SP140L
2851
+ SP6
2852
+ SPATA18
2853
+ SPATA2L
2854
+ SPATA33
2855
+ SPC24
2856
+ SPC25
2857
+ SPECC1
2858
+ SPEF2
2859
+ SPEG
2860
+ SPG7
2861
+ SPI1
2862
+ SPINK8
2863
+ SPIRE1
2864
+ SPIRE2
2865
+ SPON1
2866
+ SPON2
2867
+ SPR
2868
+ SPRED2
2869
+ SPRYD7
2870
+ SPSB1
2871
+ SPSB2
2872
+ SPTBN4
2873
+ SPTBN5
2874
+ SRCAP
2875
+ SRD5A3-AS1
2876
+ SREBF1
2877
+ SRFBP1
2878
+ SRL
2879
+ SRP14-AS1
2880
+ SRR
2881
+ SRRT
2882
+ SRSF4
2883
+ SSBP4
2884
+ SSPN
2885
+ SSPO
2886
+ SSSCA1-AS1
2887
+ ST13P13
2888
+ ST3GAL4
2889
+ ST5
2890
+ ST7L
2891
+ STAB1
2892
+ STAG1
2893
+ STAG3
2894
+ STAM2
2895
+ STAMBPL1
2896
+ STARD6
2897
+ STARD7
2898
+ STARD7-AS1
2899
+ STAT1
2900
+ STAT3
2901
+ STAT5B
2902
+ STC1
2903
+ STEAP2
2904
+ STEAP2-AS1
2905
+ STK19
2906
+ STK19P
2907
+ STK25
2908
+ STK36
2909
+ STK39
2910
+ STRBP
2911
+ STRC
2912
+ STRN3
2913
+ STX16-NPEPL1
2914
+ STX4
2915
+ STXBP1
2916
+ STXBP5
2917
+ STXBP5-AS1
2918
+ SUGCT
2919
+ SUGP1
2920
+ SULT1C3
2921
+ SUMF2
2922
+ SUMO2P1
2923
+ SUOX
2924
+ SUPT6H
2925
+ SUPT7L
2926
+ SUZ12P
2927
+ SVEP1
2928
+ SWAP70
2929
+ SYNE1
2930
+ SYNPO2
2931
+ SYNPO2L
2932
+ SYT1
2933
+ SYT10
2934
+ SYT8
2935
+ SZT2
2936
+ TAC4
2937
+ TACC3
2938
+ TAF4
2939
+ TAF5
2940
+ TAGLN
2941
+ TALDO1
2942
+ TANC2
2943
+ TARS2
2944
+ TAS1R3
2945
+ TBC1D1
2946
+ TBC1D10A
2947
+ TBC1D12
2948
+ TBCK
2949
+ TBL1XR1
2950
+ TBL2
2951
+ TBR1
2952
+ TBX20
2953
+ TBX3
2954
+ TBX5
2955
+ TBXAS1
2956
+ TCEA2
2957
+ TCF4
2958
+ TCF7L1
2959
+ TCF7L2
2960
+ TCHP
2961
+ TCIRG1
2962
+ TDRD15
2963
+ TDRD5
2964
+ TEFM
2965
+ TENC1
2966
+ TERC
2967
+ TERF2
2968
+ TERT
2969
+ TESK2
2970
+ TET1
2971
+ TET2
2972
+ TEX14
2973
+ TEX41
2974
+ TFAP2B
2975
+ TFAP2D
2976
+ TFAP4
2977
+ TFCP2L1
2978
+ TFR2
2979
+ TGFB1
2980
+ TGFB2
2981
+ TGFBR3
2982
+ TGIF1
2983
+ THADA
2984
+ THAP3
2985
+ THAP9
2986
+ THBS1
2987
+ THBS2
2988
+ THNSL1
2989
+ THOC7
2990
+ THSD4
2991
+ THSD7B
2992
+ TIE1
2993
+ TK2
2994
+ TKT
2995
+ TLE3
2996
+ TLN1
2997
+ TLN2
2998
+ TM6SF1
2999
+ TMBIM6
3000
+ TMED10
3001
+ TMEM106A
3002
+ TMEM107
3003
+ TMEM108
3004
+ TMEM116
3005
+ TMEM127
3006
+ TMEM129
3007
+ TMEM131
3008
+ TMEM144
3009
+ TMEM160
3010
+ TMEM161B
3011
+ TMEM165
3012
+ TMEM170A
3013
+ TMEM194B
3014
+ TMEM198
3015
+ TMEM199
3016
+ TMEM200B
3017
+ TMEM229B
3018
+ TMEM239
3019
+ TMEM255B
3020
+ TMEM26
3021
+ TMEM30C
3022
+ TMEM44-AS1
3023
+ TMEM60
3024
+ TMEM69
3025
+ TMEM72-AS1
3026
+ TMEM87B
3027
+ TMEM97
3028
+ TMEM9B
3029
+ TMEM9B-AS1
3030
+ TMX2
3031
+ TMX2-CTNND1
3032
+ TNFAIP1
3033
+ TNFRSF11A
3034
+ TNFSF12
3035
+ TNIP2
3036
+ TNKS
3037
+ TNN
3038
+ TNRC6A
3039
+ TNRC6B
3040
+ TNS1
3041
+ TNS3
3042
+ TNXB
3043
+ TOP3A
3044
+ TOX3
3045
+ TP53
3046
+ TP53BP1
3047
+ TPD52L2
3048
+ TPM2
3049
+ TPSP2
3050
+ TPTE2P5
3051
+ TPX2
3052
+ TRAF1
3053
+ TRAF3IP3
3054
+ TRAF7
3055
+ TRAFD1
3056
+ TRAIP
3057
+ TRAK1
3058
+ TRANK1
3059
+ TRAPPC9
3060
+ TRHR
3061
+ TRIM13
3062
+ TRIM29
3063
+ TRIM36
3064
+ TRIM38
3065
+ TRIM48
3066
+ TRIM49B
3067
+ TRIM51CP
3068
+ TRIM51FP
3069
+ TRIM51GP
3070
+ TRIM51HP
3071
+ TRIM53CP
3072
+ TRIM59
3073
+ TRIM64C
3074
+ TRIM66
3075
+ TRIOBP
3076
+ TRIP10
3077
+ TRIP12
3078
+ TRIP6
3079
+ TRMT61A
3080
+ TRNAI6
3081
+ TRNAU1AP
3082
+ TRPC4AP
3083
+ TRPM7
3084
+ TSHZ1
3085
+ TSHZ3
3086
+ TSKU
3087
+ TSNARE1
3088
+ TSPAN14
3089
+ TSPAN16
3090
+ TSPAN5
3091
+ TTC1
3092
+ TTC13
3093
+ TTC16
3094
+ TTC18
3095
+ TTC28
3096
+ TTC33
3097
+ TTC39A
3098
+ TTI2
3099
+ TTLL4
3100
+ TTLL6
3101
+ TTN
3102
+ TUB
3103
+ TUBBP2
3104
+ TUBD1
3105
+ TUBGCP4
3106
+ TWIST1
3107
+ TXN
3108
+ TXNDC5
3109
+ TXNDC8
3110
+ TXNL4B
3111
+ TYRL
3112
+ U3
3113
+ U8
3114
+ U91328.2
3115
+ U91328.21
3116
+ U91328.22
3117
+ UBA2
3118
+ UBAP1
3119
+ UBAP2L
3120
+ UBASH3B
3121
+ UBD
3122
+ UBDP1
3123
+ UBE2D3
3124
+ UBE2E3
3125
+ UBE2I
3126
+ UBE2L3
3127
+ UBE2Q2
3128
+ UBE3B
3129
+ UBE4A
3130
+ UBE4B
3131
+ UBN1
3132
+ UBR2
3133
+ UBTF
3134
+ UBTFL7
3135
+ UBXN2A
3136
+ UFL1
3137
+ UFL1-AS1
3138
+ UFSP1
3139
+ UGP2
3140
+ UGT2A1
3141
+ UHRF1
3142
+ ULK3
3143
+ ULK4
3144
+ UMOD
3145
+ UNC5C
3146
+ UPF3A
3147
+ UPK3A
3148
+ UQCC1
3149
+ UQCR10
3150
+ USMG5
3151
+ USP32P3
3152
+ USP33
3153
+ USP34
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3215
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3216
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3217
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3218
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3220
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3221
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3222
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3223
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3227
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3232
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3269
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3274
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3275
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3276
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3277
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3279
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3280
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3287
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3288
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3293
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3296
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3297
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3298
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3299
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3300
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3301
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3302
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3303
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3304
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3305
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3306
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3309
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3310
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3311
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3312
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3313
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3314
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3315
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3316
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1
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19
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28
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30
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31
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32
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33
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35
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36
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37
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38
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39
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41
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42
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43
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44
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45
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47
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48
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49
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50
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51
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52
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example/data_preprocessing/input/probable_genes.tsv ADDED
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124
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142
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143
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144
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145
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146
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+ AC015688.3
181
+ RP1-66C13.4
182
+ AC003101.1
183
+ AC090616.2
184
+ AC005549.3
185
+ RAD51L3-RFFL
186
+ P2RX5-TAX1BP3
187
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188
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189
+ CTD-2267D19.3
190
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191
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192
+ AC003043.1
193
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194
+ AC102948.2
195
+ RP11-159D12.5
196
+ CTD-2510F5.6
197
+ RP11-178C3.1
198
+ RP11-15E18.4
199
+ RP11-51L5.7
200
+ RP11-51F16.8
201
+ CTD-2535L24.2
202
+ AC027763.2
203
+ RP11-542C16.2
204
+ TMEM256-PLSCR3
205
+ RP11-318A15.7
206
+ FLJ45079
207
+ C1QTNF1-AS1
208
+ RP11-1099M24.7
209
+ TMEM105
210
+ AC135178.1
211
+ RP11-849F2.7
212
+ RP11-477N12.3
213
+ RP11-595B24.2
214
+ AC012123.1
215
+ RP11-322E11.6
216
+ RP11-886H22.1
217
+ RP11-729L2.2
218
+ AC009802.1
219
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220
+ GTSCR1
221
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222
+ RP11-683L23.1
223
+ RP11-321M21.3
224
+ RP11-94B19.4
225
+ RP11-17M16.1
226
+ LINC00908
227
+ RP11-162A12.2
228
+ RP11-795F19.5
229
+ AC139100.2
230
+ CTD-2369P2.10
231
+ CTD-2369P2.12
232
+ CTC-398G3.6
233
+ CTD-2006C1.10
234
+ ZNF625-ZNF20
235
+ CTD-3105H18.14
236
+ CTD-3105H18.16
237
+ CTD-3105H18.18
238
+ CTD-2192J16.20
239
+ CTD-2192J16.22
240
+ CTD-2192J16.24
241
+ AC008686.1
242
+ CTD-3222D19.2
243
+ CTC-429P9.4
244
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245
+ CTD-2521M24.10
246
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247
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248
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249
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250
+ RP11-618P17.4
251
+ AC020907.1
252
+ AD000671.6
253
+ AC002398.9
254
+ CTD-2162K18.4
255
+ CTC-454I21.3
256
+ CTD-2528L19.4
257
+ CTB-102L5.4
258
+ AC104534.3
259
+ AC016586.1
260
+ MIA-RAB4B
261
+ RAB4B-EGLN2
262
+ AC006486.9
263
+ L34079.2
264
+ HDGFRP2
265
+ CTC-512J12.6
266
+ CTB-50L17.14
267
+ APOC4-APOC2
268
+ CTB-129P6.11
269
+ AC074212.3
270
+ AC011530.4
271
+ CTC-273B12.7
272
+ CTB-60B18.6
273
+ CTD-3148I10.9
274
+ CTC-326K19.6
275
+ CTD-2616J11.11
276
+ AC018755.1
277
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278
+ CTB-167G5.5
279
+ LILRA3
280
+ KIR3DX1
281
+ CTD-2587H24.4
282
+ CTD-2105E13.6
283
+ CTB-54O9.9
284
+ AC003002.4
285
+ AC003002.6
286
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287
+ AC004076.9
288
+ AC003005.4
289
+ AC003006.7
290
+ CTD-2583A14.10
291
+ CTD-2583A14.9
292
+ CTD-2368P22.1
293
+ CTD-3138B18.4
294
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295
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296
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297
+ AC025278.1
298
+ CTD-2207O23.12
299
+ CTD-2207O23.10
300
+ CTD-3214H19.4
301
+ CTD-3214H19.16
302
+ CTD-3193O13.9
303
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304
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305
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306
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307
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308
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309
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310
+ RP11-201K10.3
311
+ OR10J3
312
+ RP11-190A12.7
313
+ AL590560.1
314
+ AL590714.1
315
+ C1orf134
316
+ FMO6P
317
+ METTL13
318
+ C1orf220
319
+ AL162431.1
320
+ RP13-279N23.2
321
+ RP11-480I12.4
322
+ AC096644.1
323
+ RP4-559A3.7
324
+ TMEM78
325
+ TSNAX-DISC1
326
+ MDS2
327
+ AL646016.1
328
+ AL590483.1
329
+ RP1-317E23.6
330
+ RP1-27O5.3
331
+ FKSG48
332
+ RP11-268J15.5
333
+ RP11-446E24.4
334
+ MROH7-TTC4
335
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336
+ RP11-147C23.1
337
+ RP4-576H24.4
338
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339
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340
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341
+ AL035252.1
342
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343
+ RP11-410N8.4
344
+ AL121901.1
345
+ RP1-309K20.6
346
+ RP11-352D3.2
347
+ SYS1-DBNDD2
348
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349
+ AL031663.1
350
+ PRNT
351
+ PPP4R1L
352
+ RP11-93B14.6
353
+ RP5-850E9.3
354
+ AF165138.7
355
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356
+ AP000295.9
357
+ AP000304.12
358
+ SMIM11
359
+ AP000322.53
360
+ AP000688.1
361
+ DSCR4
362
+ DSCR8
363
+ AP001631.10
364
+ AP001055.1
365
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366
+ AC002472.13
367
+ AP000350.10
368
+ AP000350.4
369
+ SPECC1L-ADORA2A
370
+ RP4-539M6.19
371
+ AC005003.1
372
+ RFPL3S
373
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374
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375
+ RP1-32I10.10
376
+ FLJ27365
377
+ LL22NC03-75H12.2
378
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379
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380
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381
+ FLJ20373
382
+ AC108868.1
383
+ AC092687.4
384
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385
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386
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387
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388
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389
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390
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391
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392
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393
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394
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395
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396
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397
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398
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399
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400
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401
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402
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403
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404
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405
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406
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407
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408
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409
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410
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411
+ AC007401.2
412
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413
+ RP11-761B3.1
414
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415
+ AC007040.11
416
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417
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418
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419
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420
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421
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422
+ RP11-553A10.1
423
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424
+ TPRXL
425
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426
+ RP11-211G3.3
427
+ RP11-447L10.1
428
+ LINC00692
429
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430
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431
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432
+ CTD-2330K9.3
433
+ XXcos-LUCA11.5
434
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435
+ LINC00696
436
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437
+ RP11-766F14.2
438
+ AP001816.1
439
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440
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441
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442
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443
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444
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445
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446
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447
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448
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449
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450
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451
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452
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453
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454
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455
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456
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457
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458
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459
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460
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461
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462
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463
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464
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465
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466
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467
+ RP11-1084J3.4
468
+ CTD-2228K2.5
469
+ CTD-2203A3.1
470
+ RP11-45H22.3
471
+ AC008914.1
472
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473
+ CTD-2117L12.1
474
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475
+ AC008387.1
476
+ AC008394.1
477
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478
+ RP11-661C8.3
479
+ OFCC1
480
+ AL033381.1
481
+ RP11-637O19.3
482
+ RP3-422G23.4
483
+ RP3-468K18.5
484
+ AL590867.1
485
+ RP11-514O12.4
486
+ C6orf123
487
+ AL009178.1
488
+ SCAND3
489
+ HCG27
490
+ ATP6V1G2-DDX39B
491
+ XXbac-BPG32J3.20
492
+ XXbac-BPG181M17.5
493
+ GGNBP1
494
+ COX6A1P2
495
+ C6ORF50
496
+ RP11-444E17.6
497
+ MTRNR2L9
498
+ RP11-257K9.8
499
+ RP11-321N4.5
500
+ RP1-102H19.8
501
+ C6ORF165
502
+ AL079342.1
503
+ FLJ00325
504
+ TSRM
505
+ AC009365.3
506
+ RP11-1220K2.2
507
+ PAXIP1-AS2
508
+ HTR5A-AS1
509
+ AC099552.4
510
+ BLACE
511
+ AC008060.7
512
+ AC009403.2
513
+ AC006967.1
514
+ AC006372.1
515
+ AC073333.1
516
+ AC005082.1
517
+ KIAA0087
518
+ RP1-170O19.20
519
+ AC091801.1
520
+ RP11-89N17.1
521
+ PP13004
522
+ AC096582.1
523
+ AC011294.3
524
+ FLJ20306
525
+ AC068533.7
526
+ AC005008.2
527
+ AC002451.1
528
+ GS1-259H13.10
529
+ RP11-67H2.1
530
+ ZHX1-C8ORF76
531
+ AC138647.1
532
+ RP11-520P18.5
533
+ AC037459.4
534
+ RP11-521M14.2
535
+ RP11-598P20.5
536
+ RP11-738G5.2
537
+ C8orf44-SGK3
538
+ RP11-664D7.4
539
+ AC090574.1
540
+ RP11-382J12.1
541
+ RP11-1102P16.1
542
+ RP11-383H13.1
543
+ RP11-463D19.2
544
+ SGK223
545
+ RP11-10A14.4
546
+ AL162389.1
547
+ PALM2
548
+ RP11-295D22.1
549
+ AL590708.2
550
+ AL359091.2
551
+ RP11-101E3.5
552
+ AL360004.1
553
+ AL390778.1
554
+ C9orf163
555
+ RP11-216L13.17
556
+ AL807752.1
557
+ RP11-613M10.8
558
+ RP11-613M10.9
559
+ RP11-160N1.10
560
+ AC027307.3
561
+ RP4-583P15.15
562
+ RP4-583P15.14
563
+ AC138517.1
564
+ RP11-195F19.5
example/data_preprocessing/input/sampling/least_likely_sampled_seed42.tsv ADDED
@@ -0,0 +1,52 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Gene
2
+ GGNBP1
3
+ BIRC8
4
+ OR10J3
5
+ ZNF286B
6
+ COLCA1
7
+ CLLU1
8
+ OFCC1
9
+ UBBP4
10
+ PRR21
11
+ C9orf163
12
+ KIR3DX1
13
+ TMEM78
14
+ FAM182B
15
+ LOH12CR2
16
+ PAXIP1-AS2
17
+ RP11-176H8.1
18
+ RP11-113D6.10
19
+ PTCHD3
20
+ BRI3BP
21
+ SACM1L
22
+ LDHB
23
+ METTL13
24
+ PRNT
25
+ FMO6P
26
+ MDS2
27
+ TMEM105
28
+ GABARAPL3
29
+ EIF2S3L
30
+ RFPL3S
31
+ TLX1NB
32
+ PRR25
33
+ COX6A1P2
34
+ C11orf40
35
+ LINC00692
36
+ PALM2
37
+ DSCR4
38
+ C15orf32
39
+ LINC00923
40
+ GTSCR1
41
+ MTRNR2L9
42
+ LINC00908
43
+ LINC01101
44
+ TPRXL
45
+ RP11-144F15.1
46
+ RP11-321M21.3
47
+ RP11-80A15.1
48
+ CTD-3088G3.8
49
+ RP11-362K2.2
50
+ RP11-180C1.1
51
+ RP11-67H2.1
52
+ RP11-65D24.2
example/data_preprocessing/input/sampling/least_likely_sampling_audit_seed42.json ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "seed": 42,
3
+ "target_total": 51,
4
+ "original_least": 563,
5
+ "per_bin": {
6
+ "0": {
7
+ "desired": 17,
8
+ "available": 335,
9
+ "taken": 17
10
+ },
11
+ "1": {
12
+ "desired": 17,
13
+ "available": 152,
14
+ "taken": 17
15
+ },
16
+ "2": {
17
+ "desired": 17,
18
+ "available": 76,
19
+ "taken": 17
20
+ }
21
+ }
22
+ }
example/data_preprocessing/input/sampling/variant_count_box_seed42.png ADDED

Git LFS Details

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  • Pointer size: 130 Bytes
  • Size of remote file: 30.1 kB
example/data_preprocessing/input/sampling/variant_count_hist_seed42.png ADDED

Git LFS Details

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  • Pointer size: 130 Bytes
  • Size of remote file: 40.6 kB
example/data_preprocessing/input/training_genes.txt ADDED
@@ -0,0 +1,248 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Gene label
2
+ GGNBP1 least likely
3
+ BIRC8 least likely
4
+ OR10J3 least likely
5
+ ZNF286B least likely
6
+ COLCA1 least likely
7
+ CLLU1 least likely
8
+ OFCC1 least likely
9
+ UBBP4 least likely
10
+ PRR21 least likely
11
+ C9orf163 least likely
12
+ KIR3DX1 least likely
13
+ TMEM78 least likely
14
+ FAM182B least likely
15
+ LOH12CR2 least likely
16
+ PAXIP1-AS2 least likely
17
+ RP11-176H8.1 least likely
18
+ RP11-113D6.10 least likely
19
+ PTCHD3 least likely
20
+ BRI3BP least likely
21
+ SACM1L least likely
22
+ LDHB least likely
23
+ METTL13 least likely
24
+ PRNT least likely
25
+ FMO6P least likely
26
+ MDS2 least likely
27
+ TMEM105 least likely
28
+ GABARAPL3 least likely
29
+ EIF2S3L least likely
30
+ RFPL3S least likely
31
+ TLX1NB least likely
32
+ PRR25 least likely
33
+ COX6A1P2 least likely
34
+ C11orf40 least likely
35
+ LINC00692 least likely
36
+ PALM2 least likely
37
+ DSCR4 least likely
38
+ C15orf32 least likely
39
+ LINC00923 least likely
40
+ GTSCR1 least likely
41
+ MTRNR2L9 least likely
42
+ LINC00908 least likely
43
+ LINC01101 least likely
44
+ TPRXL least likely
45
+ RP11-144F15.1 least likely
46
+ RP11-321M21.3 least likely
47
+ RP11-80A15.1 least likely
48
+ CTD-3088G3.8 least likely
49
+ RP11-362K2.2 least likely
50
+ RP11-180C1.1 least likely
51
+ RP11-67H2.1 least likely
52
+ RP11-65D24.2 least likely
53
+ RET probable
54
+ PDE6C probable
55
+ GRIA4 probable
56
+ GUCY1A2 probable
57
+ GRIK4 probable
58
+ PDE3B probable
59
+ ABCC8 probable
60
+ TH probable
61
+ F2 probable
62
+ NDUFS3 probable
63
+ CHRM1 probable
64
+ PDE2A probable
65
+ PAH probable
66
+ GRIN2B probable
67
+ PDE3A probable
68
+ NDUFA9 probable
69
+ VDR probable
70
+ SCN8A probable
71
+ PDE1B probable
72
+ AVPR1A probable
73
+ NDUFA12 probable
74
+ FLT3 probable
75
+ RXFP2 probable
76
+ EDNRB probable
77
+ PTGER2 probable
78
+ ESR2 probable
79
+ KCNK10 probable
80
+ GABRB3 probable
81
+ GABRG3 probable
82
+ NDUFAF1 probable
83
+ MGAM probable
84
+ CYP19A1 probable
85
+ CA12 probable
86
+ CHRNA3 probable
87
+ CHRNB4 probable
88
+ PDE8A probable
89
+ GRIN2A probable
90
+ NDUFB10 probable
91
+ NDUFAB1 probable
92
+ VKORC1 probable
93
+ SLC6A2 probable
94
+ SLC12A3 probable
95
+ TUBB3 probable
96
+ ADORA2B probable
97
+ SLC6A4 probable
98
+ CA4 probable
99
+ CHRNB1 probable
100
+ NDUFV2 probable
101
+ PDE4A probable
102
+ KEAP1 probable
103
+ BRD4 probable
104
+ PDE4C probable
105
+ GRIK5 probable
106
+ GRIN2D probable
107
+ INSR probable
108
+ ADORA3 probable
109
+ ATP1A1 probable
110
+ IL6R probable
111
+ CHRNB2 probable
112
+ ATP1A4 probable
113
+ ADORA1 probable
114
+ REN probable
115
+ KCNK2 probable
116
+ PARP1 probable
117
+ CHRM3 probable
118
+ CNR2 probable
119
+ GRIK3 probable
120
+ FAAH probable
121
+ PDE4B probable
122
+ PTGFR probable
123
+ BRDT probable
124
+ ADRA1D probable
125
+ TUBB1 probable
126
+ RRM2 probable
127
+ IL1R1 probable
128
+ ROCK2 probable
129
+ GPD2 probable
130
+ SCN2A probable
131
+ SCN7A probable
132
+ NFE2L2 probable
133
+ PDE6D probable
134
+ CHRND probable
135
+ CHRNG probable
136
+ NDUFA10 probable
137
+ KCNK3 probable
138
+ XDH probable
139
+ CD80 probable
140
+ CD86 probable
141
+ PPARG probable
142
+ AGTR1 probable
143
+ SCN5A probable
144
+ SCN10A probable
145
+ SCN11A probable
146
+ IMPDH2 probable
147
+ TLR9 probable
148
+ NISCH probable
149
+ ENPEP probable
150
+ PDE5A probable
151
+ NR3C2 probable
152
+ GUCY1A1 probable
153
+ GUCY1B1 probable
154
+ GRIA2 probable
155
+ ADRA2C probable
156
+ GABRG1 probable
157
+ GABRA2 probable
158
+ GABRB1 probable
159
+ PDGFRA probable
160
+ KIT probable
161
+ KDR probable
162
+ NDUFA2 probable
163
+ NR3C1 probable
164
+ PDE6A probable
165
+ GLRA1 probable
166
+ GRIA1 probable
167
+ ADRA1B probable
168
+ DRD1 probable
169
+ FLT4 probable
170
+ NDUFS4 probable
171
+ PDE4D probable
172
+ NDUFAF2 probable
173
+ HMGCR probable
174
+ PDE8B probable
175
+ PDE7B probable
176
+ ESR1 probable
177
+ OPRM1 probable
178
+ PDE10A probable
179
+ TNF probable
180
+ BRD2 probable
181
+ GLP1R probable
182
+ CNR1 probable
183
+ NDUFA5 probable
184
+ IMPDH1 probable
185
+ TBXAS1 probable
186
+ PDE1C probable
187
+ CYP3A5 probable
188
+ CYP3A7 probable
189
+ CYP3A4 probable
190
+ CYP3A43 probable
191
+ KCNK9 probable
192
+ PTK2 probable
193
+ C5 probable
194
+ NDUFA8 probable
195
+ ABL1 probable
196
+ DBH probable
197
+ BRD3 probable
198
+ ABCC9 most likely
199
+ ACBD4 most likely
200
+ ACE most likely
201
+ ADRA2B most likely
202
+ ADRB1 most likely
203
+ ADRB2 most likely
204
+ AGT most likely
205
+ APOE most likely
206
+ CACNA1C most likely
207
+ CACNA1D most likely
208
+ CACNA2D2 most likely
209
+ CACNB2 most likely
210
+ CACNB4 most likely
211
+ CAMK2B most likely
212
+ CAST most likely
213
+ CCND1 most likely
214
+ CLCN6 most likely
215
+ CYP11B2 most likely
216
+ CYP1A2 most likely
217
+ CYP2C19 most likely
218
+ DSP most likely
219
+ DUSP1 most likely
220
+ EDN1 most likely
221
+ EDNRA most likely
222
+ GJA1 most likely
223
+ GUCY1A3 most likely
224
+ GUCY1B3 most likely
225
+ HFE most likely
226
+ HSPA4 most likely
227
+ ITGB5 most likely
228
+ KCNJ11 most likely
229
+ LDLR most likely
230
+ MME most likely
231
+ MYO9B most likely
232
+ NEDD4L most likely
233
+ NPPA most likely
234
+ NPPB most likely
235
+ NPR1 most likely
236
+ NPR3 most likely
237
+ PDE1A most likely
238
+ PGR most likely
239
+ PKD2L1 most likely
240
+ PLCD3 most likely
241
+ RAD52 most likely
242
+ SHBG most likely
243
+ SLC12A2 most likely
244
+ SLC14A2 most likely
245
+ SLC2A4 most likely
246
+ SLC5A1 most likely
247
+ TGFB1 most likely
248
+ VEGFA most likely
example/data_preprocessing/output/all_genes_merged_all_data.csv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:2e73806339f9dade115f9411e30258c5056bcd168fedb0c2c5096426789c39d4
3
+ size 24334624
example/data_preprocessing/output/enrichr/least_likely_genes.tsv ADDED
@@ -0,0 +1,564 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Gene
2
+ AL359878.1
3
+ TLX1NB
4
+ RP11-451M19.3
5
+ RP11-12J10.3
6
+ AL138764.1
7
+ AL450307.1
8
+ RP11-108K14.8
9
+ RP11-295P9.3
10
+ RP11-139J15.7
11
+ PTCHD3
12
+ C10orf126
13
+ DKFZP667F0711
14
+ RP11-242G20.1
15
+ AL133481.1
16
+ AL359195.1
17
+ ARHGAP19-SLIT1
18
+ AL355490.1
19
+ RP11-315O6.2
20
+ RP11-817J15.3
21
+ AP002353.1
22
+ AP001024.2
23
+ AP001024.1
24
+ COLCA1
25
+ RP11-794P6.2
26
+ HSPB2-C11orf52
27
+ AP002884.3
28
+ RP11-212D19.4
29
+ AC131935.1
30
+ RP11-770J1.5
31
+ RP11-770J1.4
32
+ AP000783.1
33
+ AP000708.1
34
+ RP11-712L6.5
35
+ AP003041.2
36
+ AP003062.1
37
+ RP11-295K3.1
38
+ RP11-113D6.6
39
+ RP11-113D6.10
40
+ AL356215.1
41
+ CTD-2210P24.4
42
+ C11orf40
43
+ RP11-872D17.8
44
+ ZFP91-CNTF
45
+ RP11-286N22.8
46
+ AP003733.1
47
+ MIR3654
48
+ RP11-831H9.11
49
+ HNRNPUL2-BSCL2
50
+ AP003774.4
51
+ RP11-399J13.3
52
+ AP003068.23
53
+ AP000769.1
54
+ RP11-867G23.8
55
+ CTD-3074O7.11
56
+ AP001888.1
57
+ RP11-849H4.2
58
+ DKFZP434E1119
59
+ AP000974.1
60
+ AC132192.1
61
+ RP11-650K20.3
62
+ KLRC4-KLRK1
63
+ EIF2S3L
64
+ RP11-144F15.1
65
+ RP11-116D17.1
66
+ AL021546.6
67
+ RP11-512M8.5
68
+ LOH12CR2
69
+ BRI3BP
70
+ CTD-2140B24.4
71
+ AC226150.4
72
+ RP11-125O5.2
73
+ LDHB
74
+ OVCH1-AS1
75
+ RP11-500M8.7
76
+ RP11-234B24.6
77
+ AC140061.12
78
+ AC139768.1
79
+ AC055736.1
80
+ RP11-793H13.10
81
+ RP11-834C11.12
82
+ RP11-644F5.10
83
+ RP11-762I7.5
84
+ RP11-603J24.9
85
+ RP11-977G19.10
86
+ RP11-123K3.4
87
+ RP11-571M6.15
88
+ RP11-362K2.2
89
+ RP11-272B17.2
90
+ AC124890.1
91
+ AC025263.3
92
+ CTD-2021H9.3
93
+ RP11-293I14.2
94
+ CLLU1
95
+ RP11-167N24.6
96
+ RP11-181C3.1
97
+ RP11-65D24.2
98
+ AL137002.1
99
+ RP11-408E5.4
100
+ RP11-307N16.6
101
+ AL133318.1
102
+ AL136218.1
103
+ AL445989.1
104
+ AL355390.1
105
+ AL117190.3
106
+ RP11-796G6.2
107
+ AE000662.92
108
+ DHRS4-AS1
109
+ RP11-468E2.6
110
+ RP11-468E2.4
111
+ RP11-934B9.3
112
+ RP11-80A15.1
113
+ RP11-176H8.1
114
+ RP11-187E13.1
115
+ RP11-187E13.2
116
+ SLC25A21-AS1
117
+ AL139099.1
118
+ RP11-1085N6.3
119
+ RP11-47I22.4
120
+ RP11-47I22.3
121
+ CTD-2014B16.3
122
+ RP11-1012A1.4
123
+ RP5-1021I20.4
124
+ RP11-293M10.1
125
+ RP11-463C8.4
126
+ RP11-322L20.1
127
+ AL133373.1
128
+ RP11-371E8.4
129
+ RP11-986E7.7
130
+ RP11-1070N10.3
131
+ RP11-404P21.8
132
+ DKFZP434O1614
133
+ RP11-204N11.1
134
+ CTD-2054N24.2
135
+ RP11-89K11.1
136
+ RP11-133K1.2
137
+ RP11-96O20.4
138
+ FKSG62
139
+ CTD-2116N17.1
140
+ AC027228.1
141
+ RP11-210M15.2
142
+ RP11-597K23.2
143
+ RP11-152F13.10
144
+ RP11-379H8.1
145
+ TTLL13
146
+ RP11-697E2.6
147
+ GABARAPL3
148
+ C15orf32
149
+ AC112693.2
150
+ LINC00923
151
+ CTD-3088G3.8
152
+ RP11-166B2.1
153
+ RP11-1021N1.1
154
+ LA16c-431H6.6
155
+ RP11-1035H13.3
156
+ AC137056.1
157
+ CTD-3203P2.2
158
+ CTB-134H23.2
159
+ AC002310.13
160
+ RP11-196G11.1
161
+ CTD-2144E22.5
162
+ RP11-324D17.1
163
+ AC026461.1
164
+ RP11-105C20.2
165
+ CTC-479C5.12
166
+ AC009060.1
167
+ RP11-529K1.3
168
+ RP11-77K12.7
169
+ RP11-58C22.1
170
+ RP11-505K9.4
171
+ CTC-786C10.1
172
+ PRR25
173
+ RP11-680G10.1
174
+ RP11-178L8.4
175
+ RP11-297M9.1
176
+ RP11-385D13.1
177
+ RP11-45M22.4
178
+ ZNF286B
179
+ UBBP4
180
+ AC015688.3
181
+ RP1-66C13.4
182
+ AC003101.1
183
+ AC090616.2
184
+ AC005549.3
185
+ RAD51L3-RFFL
186
+ P2RX5-TAX1BP3
187
+ RP11-1407O15.2
188
+ CTB-58E17.5
189
+ CTD-2267D19.3
190
+ CTD-2132N18.3
191
+ RP11-527L4.2
192
+ AC003043.1
193
+ RP11-156P1.2
194
+ AC102948.2
195
+ RP11-159D12.5
196
+ CTD-2510F5.6
197
+ RP11-178C3.1
198
+ RP11-15E18.4
199
+ RP11-51L5.7
200
+ RP11-51F16.8
201
+ CTD-2535L24.2
202
+ AC027763.2
203
+ RP11-542C16.2
204
+ TMEM256-PLSCR3
205
+ RP11-318A15.7
206
+ FLJ45079
207
+ C1QTNF1-AS1
208
+ RP11-1099M24.7
209
+ TMEM105
210
+ AC135178.1
211
+ RP11-849F2.7
212
+ RP11-477N12.3
213
+ RP11-595B24.2
214
+ AC012123.1
215
+ RP11-322E11.6
216
+ RP11-886H22.1
217
+ RP11-729L2.2
218
+ AC009802.1
219
+ RP11-41O4.1
220
+ GTSCR1
221
+ RP11-723G8.2
222
+ RP11-683L23.1
223
+ RP11-321M21.3
224
+ RP11-94B19.4
225
+ RP11-17M16.1
226
+ LINC00908
227
+ RP11-162A12.2
228
+ RP11-795F19.5
229
+ AC139100.2
230
+ CTD-2369P2.10
231
+ CTD-2369P2.12
232
+ CTC-398G3.6
233
+ CTD-2006C1.10
234
+ ZNF625-ZNF20
235
+ CTD-3105H18.14
236
+ CTD-3105H18.16
237
+ CTD-3105H18.18
238
+ CTD-2192J16.20
239
+ CTD-2192J16.22
240
+ CTD-2192J16.24
241
+ AC008686.1
242
+ CTD-3222D19.2
243
+ CTC-429P9.4
244
+ AC010646.3
245
+ CTD-2521M24.10
246
+ CTC-260F20.3
247
+ CTD-2561J22.3
248
+ AC006538.4
249
+ AC020952.1
250
+ RP11-618P17.4
251
+ AC020907.1
252
+ AD000671.6
253
+ AC002398.9
254
+ CTD-2162K18.4
255
+ CTC-454I21.3
256
+ CTD-2528L19.4
257
+ CTB-102L5.4
258
+ AC104534.3
259
+ AC016586.1
260
+ MIA-RAB4B
261
+ RAB4B-EGLN2
262
+ AC006486.9
263
+ L34079.2
264
+ HDGFRP2
265
+ CTC-512J12.6
266
+ CTB-50L17.14
267
+ APOC4-APOC2
268
+ CTB-129P6.11
269
+ AC074212.3
270
+ AC011530.4
271
+ CTC-273B12.7
272
+ CTB-60B18.6
273
+ CTD-3148I10.9
274
+ CTC-326K19.6
275
+ CTD-2616J11.11
276
+ AC018755.1
277
+ BIRC8
278
+ CTB-167G5.5
279
+ LILRA3
280
+ KIR3DX1
281
+ CTD-2587H24.4
282
+ CTD-2105E13.6
283
+ CTB-54O9.9
284
+ AC003002.4
285
+ AC003002.6
286
+ AC004076.7
287
+ AC004076.9
288
+ AC003005.4
289
+ AC003006.7
290
+ CTD-2583A14.10
291
+ CTD-2583A14.9
292
+ CTD-2368P22.1
293
+ CTD-3138B18.4
294
+ AC010642.1
295
+ AC012313.1
296
+ AC104532.2
297
+ AC025278.1
298
+ CTD-2207O23.12
299
+ CTD-2207O23.10
300
+ CTD-3214H19.4
301
+ CTD-3214H19.16
302
+ CTD-3193O13.9
303
+ AC010336.1
304
+ AC004528.1
305
+ RP11-426L16.10
306
+ ADAMTSL4-AS1
307
+ AL645728.1
308
+ RP11-126K1.2
309
+ AL589765.1
310
+ RP11-201K10.3
311
+ OR10J3
312
+ RP11-190A12.7
313
+ AL590560.1
314
+ AL590714.1
315
+ C1orf134
316
+ FMO6P
317
+ METTL13
318
+ C1orf220
319
+ AL162431.1
320
+ RP13-279N23.2
321
+ RP11-480I12.4
322
+ AC096644.1
323
+ RP4-559A3.7
324
+ TMEM78
325
+ TSNAX-DISC1
326
+ MDS2
327
+ AL646016.1
328
+ AL590483.1
329
+ RP1-317E23.6
330
+ RP1-27O5.3
331
+ FKSG48
332
+ RP11-268J15.5
333
+ RP11-446E24.4
334
+ MROH7-TTC4
335
+ RP5-1052I5.2
336
+ RP11-147C23.1
337
+ RP4-576H24.4
338
+ AL121761.2
339
+ AL096677.1
340
+ RP4-734P14.4
341
+ AL035252.1
342
+ FAM182B
343
+ RP11-410N8.4
344
+ AL121901.1
345
+ RP1-309K20.6
346
+ RP11-352D3.2
347
+ SYS1-DBNDD2
348
+ AL031663.2
349
+ AL031663.1
350
+ PRNT
351
+ PPP4R1L
352
+ RP11-93B14.6
353
+ RP5-850E9.3
354
+ AF165138.7
355
+ AP000275.65
356
+ AP000295.9
357
+ AP000304.12
358
+ SMIM11
359
+ AP000322.53
360
+ AP000688.1
361
+ DSCR4
362
+ DSCR8
363
+ AP001631.10
364
+ AP001055.1
365
+ AC006946.15
366
+ AC002472.13
367
+ AP000350.10
368
+ AP000350.4
369
+ SPECC1L-ADORA2A
370
+ RP4-539M6.19
371
+ AC005003.1
372
+ RFPL3S
373
+ AL031590.1
374
+ AL035681.1
375
+ RP1-32I10.10
376
+ FLJ27365
377
+ LL22NC03-75H12.2
378
+ CHKB-CPT1B
379
+ AC012493.2
380
+ AC104794.4
381
+ FLJ20373
382
+ AC108868.1
383
+ AC092687.4
384
+ LINC01101
385
+ AC114783.1
386
+ AC023469.1
387
+ AC008271.1
388
+ AC011997.1
389
+ AC079354.1
390
+ AC079354.2
391
+ AC017081.1
392
+ AC017104.2
393
+ MGC4771
394
+ AC106876.2
395
+ AC112715.2
396
+ AC112721.1
397
+ UBE2F-SCLY
398
+ AC016757.3
399
+ AC062017.1
400
+ AC079612.1
401
+ AC093802.1
402
+ PRR21
403
+ AC013469.1
404
+ AC011298.1
405
+ AC104809.3
406
+ SF3B14
407
+ RP11-507M3.1
408
+ AC013449.1
409
+ AC109829.1
410
+ RP13-512J5.1
411
+ AC007401.2
412
+ AC007382.1
413
+ RP11-761B3.1
414
+ AC138655.1
415
+ AC007040.11
416
+ MGC10955
417
+ CATX-2
418
+ RP11-287D1.3
419
+ AC111200.1
420
+ AC092675.3
421
+ RP11-438J1.1
422
+ RP11-553A10.1
423
+ RP11-484M3.5
424
+ TPRXL
425
+ RP11-434D12.1
426
+ RP11-211G3.3
427
+ RP11-447L10.1
428
+ LINC00692
429
+ SACM1L
430
+ AC018816.3
431
+ RP11-3B7.1
432
+ CTD-2330K9.3
433
+ XXcos-LUCA11.5
434
+ RP11-155D18.14
435
+ LINC00696
436
+ RP5-966M1.6
437
+ RP11-766F14.2
438
+ AP001816.1
439
+ RP11-455G16.1
440
+ AC079341.1
441
+ RP11-62N21.1
442
+ RP11-542P2.1
443
+ RP11-6L6.2
444
+ RP11-171N4.2
445
+ RP11-487E13.1
446
+ RP11-279O9.4
447
+ AC110771.1
448
+ RP11-215A19.2
449
+ RP11-503N18.3
450
+ RP11-180C1.1
451
+ AC093323.1
452
+ AC097381.1
453
+ RP11-9B6.1
454
+ RP11-1396O13.13
455
+ RP11-1C1.5
456
+ AC011366.3
457
+ CTC-554D6.1
458
+ CTC-487M23.8
459
+ CTD-2287O16.3
460
+ CTC-432M15.3
461
+ CTD-2410N18.5
462
+ AC010441.1
463
+ AC112205.1
464
+ CTB-78H18.1
465
+ AC027309.1
466
+ AC136604.1
467
+ RP11-1084J3.4
468
+ CTD-2228K2.5
469
+ CTD-2203A3.1
470
+ RP11-45H22.3
471
+ AC008914.1
472
+ CTC-236F12.4
473
+ CTD-2117L12.1
474
+ RP11-404L6.2
475
+ AC008387.1
476
+ AC008394.1
477
+ CTD-2215E18.1
478
+ RP11-661C8.3
479
+ OFCC1
480
+ AL033381.1
481
+ RP11-637O19.3
482
+ RP3-422G23.4
483
+ RP3-468K18.5
484
+ AL590867.1
485
+ RP11-514O12.4
486
+ C6orf123
487
+ AL009178.1
488
+ SCAND3
489
+ HCG27
490
+ ATP6V1G2-DDX39B
491
+ XXbac-BPG32J3.20
492
+ XXbac-BPG181M17.5
493
+ GGNBP1
494
+ COX6A1P2
495
+ C6ORF50
496
+ RP11-444E17.6
497
+ MTRNR2L9
498
+ RP11-257K9.8
499
+ RP11-321N4.5
500
+ RP1-102H19.8
501
+ C6ORF165
502
+ AL079342.1
503
+ FLJ00325
504
+ TSRM
505
+ AC009365.3
506
+ RP11-1220K2.2
507
+ PAXIP1-AS2
508
+ HTR5A-AS1
509
+ AC099552.4
510
+ BLACE
511
+ AC008060.7
512
+ AC009403.2
513
+ AC006967.1
514
+ AC006372.1
515
+ AC073333.1
516
+ AC005082.1
517
+ KIAA0087
518
+ RP1-170O19.20
519
+ AC091801.1
520
+ RP11-89N17.1
521
+ PP13004
522
+ AC096582.1
523
+ AC011294.3
524
+ FLJ20306
525
+ AC068533.7
526
+ AC005008.2
527
+ AC002451.1
528
+ GS1-259H13.10
529
+ RP11-67H2.1
530
+ ZHX1-C8ORF76
531
+ AC138647.1
532
+ RP11-520P18.5
533
+ AC037459.4
534
+ RP11-521M14.2
535
+ RP11-598P20.5
536
+ RP11-738G5.2
537
+ C8orf44-SGK3
538
+ RP11-664D7.4
539
+ AC090574.1
540
+ RP11-382J12.1
541
+ RP11-1102P16.1
542
+ RP11-383H13.1
543
+ RP11-463D19.2
544
+ SGK223
545
+ RP11-10A14.4
546
+ AL162389.1
547
+ PALM2
548
+ RP11-295D22.1
549
+ AL590708.2
550
+ AL359091.2
551
+ RP11-101E3.5
552
+ AL360004.1
553
+ AL390778.1
554
+ C9orf163
555
+ RP11-216L13.17
556
+ AL807752.1
557
+ RP11-613M10.8
558
+ RP11-613M10.9
559
+ RP11-160N1.10
560
+ AC027307.3
561
+ RP4-583P15.15
562
+ RP4-583P15.14
563
+ AC138517.1
564
+ RP11-195F19.5
example/data_preprocessing/output/enrichr/least_likely_genes_enriched_2025-11-13.tsv ADDED
@@ -0,0 +1,9 @@
 
 
 
 
 
 
 
 
 
 
1
+ Gene
2
+ AMD1
3
+ CASP12
4
+ GPX1
5
+ MAPK10
6
+ MPZ
7
+ OPRK1
8
+ OPRL1
9
+ TTC6
example/data_preprocessing/output/enrichr/least_likely_intermediate_enrichr_filtered.tsv ADDED
@@ -0,0 +1,564 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Gene
2
+ AL359878.1
3
+ TLX1NB
4
+ RP11-451M19.3
5
+ RP11-12J10.3
6
+ AL138764.1
7
+ AL450307.1
8
+ RP11-108K14.8
9
+ RP11-295P9.3
10
+ RP11-139J15.7
11
+ PTCHD3
12
+ C10orf126
13
+ DKFZP667F0711
14
+ RP11-242G20.1
15
+ AL133481.1
16
+ AL359195.1
17
+ ARHGAP19-SLIT1
18
+ AL355490.1
19
+ RP11-315O6.2
20
+ RP11-817J15.3
21
+ AP002353.1
22
+ AP001024.2
23
+ AP001024.1
24
+ COLCA1
25
+ RP11-794P6.2
26
+ HSPB2-C11orf52
27
+ AP002884.3
28
+ RP11-212D19.4
29
+ AC131935.1
30
+ RP11-770J1.5
31
+ RP11-770J1.4
32
+ AP000783.1
33
+ AP000708.1
34
+ RP11-712L6.5
35
+ AP003041.2
36
+ AP003062.1
37
+ RP11-295K3.1
38
+ RP11-113D6.6
39
+ RP11-113D6.10
40
+ AL356215.1
41
+ CTD-2210P24.4
42
+ C11orf40
43
+ RP11-872D17.8
44
+ ZFP91-CNTF
45
+ RP11-286N22.8
46
+ AP003733.1
47
+ MIR3654
48
+ RP11-831H9.11
49
+ HNRNPUL2-BSCL2
50
+ AP003774.4
51
+ RP11-399J13.3
52
+ AP003068.23
53
+ AP000769.1
54
+ RP11-867G23.8
55
+ CTD-3074O7.11
56
+ AP001888.1
57
+ RP11-849H4.2
58
+ DKFZP434E1119
59
+ AP000974.1
60
+ AC132192.1
61
+ RP11-650K20.3
62
+ KLRC4-KLRK1
63
+ EIF2S3L
64
+ RP11-144F15.1
65
+ RP11-116D17.1
66
+ AL021546.6
67
+ RP11-512M8.5
68
+ LOH12CR2
69
+ BRI3BP
70
+ CTD-2140B24.4
71
+ AC226150.4
72
+ RP11-125O5.2
73
+ LDHB
74
+ OVCH1-AS1
75
+ RP11-500M8.7
76
+ RP11-234B24.6
77
+ AC140061.12
78
+ AC139768.1
79
+ AC055736.1
80
+ RP11-793H13.10
81
+ RP11-834C11.12
82
+ RP11-644F5.10
83
+ RP11-762I7.5
84
+ RP11-603J24.9
85
+ RP11-977G19.10
86
+ RP11-123K3.4
87
+ RP11-571M6.15
88
+ RP11-362K2.2
89
+ RP11-272B17.2
90
+ AC124890.1
91
+ AC025263.3
92
+ CTD-2021H9.3
93
+ RP11-293I14.2
94
+ CLLU1
95
+ RP11-167N24.6
96
+ RP11-181C3.1
97
+ RP11-65D24.2
98
+ AL137002.1
99
+ RP11-408E5.4
100
+ RP11-307N16.6
101
+ AL133318.1
102
+ AL136218.1
103
+ AL445989.1
104
+ AL355390.1
105
+ AL117190.3
106
+ RP11-796G6.2
107
+ AE000662.92
108
+ DHRS4-AS1
109
+ RP11-468E2.6
110
+ RP11-468E2.4
111
+ RP11-934B9.3
112
+ RP11-80A15.1
113
+ RP11-176H8.1
114
+ RP11-187E13.1
115
+ RP11-187E13.2
116
+ SLC25A21-AS1
117
+ AL139099.1
118
+ RP11-1085N6.3
119
+ RP11-47I22.4
120
+ RP11-47I22.3
121
+ CTD-2014B16.3
122
+ RP11-1012A1.4
123
+ RP5-1021I20.4
124
+ RP11-293M10.1
125
+ RP11-463C8.4
126
+ RP11-322L20.1
127
+ AL133373.1
128
+ RP11-371E8.4
129
+ RP11-986E7.7
130
+ RP11-1070N10.3
131
+ RP11-404P21.8
132
+ DKFZP434O1614
133
+ RP11-204N11.1
134
+ CTD-2054N24.2
135
+ RP11-89K11.1
136
+ RP11-133K1.2
137
+ RP11-96O20.4
138
+ FKSG62
139
+ CTD-2116N17.1
140
+ AC027228.1
141
+ RP11-210M15.2
142
+ RP11-597K23.2
143
+ RP11-152F13.10
144
+ RP11-379H8.1
145
+ TTLL13
146
+ RP11-697E2.6
147
+ GABARAPL3
148
+ C15orf32
149
+ AC112693.2
150
+ LINC00923
151
+ CTD-3088G3.8
152
+ RP11-166B2.1
153
+ RP11-1021N1.1
154
+ LA16c-431H6.6
155
+ RP11-1035H13.3
156
+ AC137056.1
157
+ CTD-3203P2.2
158
+ CTB-134H23.2
159
+ AC002310.13
160
+ RP11-196G11.1
161
+ CTD-2144E22.5
162
+ RP11-324D17.1
163
+ AC026461.1
164
+ RP11-105C20.2
165
+ CTC-479C5.12
166
+ AC009060.1
167
+ RP11-529K1.3
168
+ RP11-77K12.7
169
+ RP11-58C22.1
170
+ RP11-505K9.4
171
+ CTC-786C10.1
172
+ PRR25
173
+ RP11-680G10.1
174
+ RP11-178L8.4
175
+ RP11-297M9.1
176
+ RP11-385D13.1
177
+ RP11-45M22.4
178
+ ZNF286B
179
+ UBBP4
180
+ AC015688.3
181
+ RP1-66C13.4
182
+ AC003101.1
183
+ AC090616.2
184
+ AC005549.3
185
+ RAD51L3-RFFL
186
+ P2RX5-TAX1BP3
187
+ RP11-1407O15.2
188
+ CTB-58E17.5
189
+ CTD-2267D19.3
190
+ CTD-2132N18.3
191
+ RP11-527L4.2
192
+ AC003043.1
193
+ RP11-156P1.2
194
+ AC102948.2
195
+ RP11-159D12.5
196
+ CTD-2510F5.6
197
+ RP11-178C3.1
198
+ RP11-15E18.4
199
+ RP11-51L5.7
200
+ RP11-51F16.8
201
+ CTD-2535L24.2
202
+ AC027763.2
203
+ RP11-542C16.2
204
+ TMEM256-PLSCR3
205
+ RP11-318A15.7
206
+ FLJ45079
207
+ C1QTNF1-AS1
208
+ RP11-1099M24.7
209
+ TMEM105
210
+ AC135178.1
211
+ RP11-849F2.7
212
+ RP11-477N12.3
213
+ RP11-595B24.2
214
+ AC012123.1
215
+ RP11-322E11.6
216
+ RP11-886H22.1
217
+ RP11-729L2.2
218
+ AC009802.1
219
+ RP11-41O4.1
220
+ GTSCR1
221
+ RP11-723G8.2
222
+ RP11-683L23.1
223
+ RP11-321M21.3
224
+ RP11-94B19.4
225
+ RP11-17M16.1
226
+ LINC00908
227
+ RP11-162A12.2
228
+ RP11-795F19.5
229
+ AC139100.2
230
+ CTD-2369P2.10
231
+ CTD-2369P2.12
232
+ CTC-398G3.6
233
+ CTD-2006C1.10
234
+ ZNF625-ZNF20
235
+ CTD-3105H18.14
236
+ CTD-3105H18.16
237
+ CTD-3105H18.18
238
+ CTD-2192J16.20
239
+ CTD-2192J16.22
240
+ CTD-2192J16.24
241
+ AC008686.1
242
+ CTD-3222D19.2
243
+ CTC-429P9.4
244
+ AC010646.3
245
+ CTD-2521M24.10
246
+ CTC-260F20.3
247
+ CTD-2561J22.3
248
+ AC006538.4
249
+ AC020952.1
250
+ RP11-618P17.4
251
+ AC020907.1
252
+ AD000671.6
253
+ AC002398.9
254
+ CTD-2162K18.4
255
+ CTC-454I21.3
256
+ CTD-2528L19.4
257
+ CTB-102L5.4
258
+ AC104534.3
259
+ AC016586.1
260
+ MIA-RAB4B
261
+ RAB4B-EGLN2
262
+ AC006486.9
263
+ L34079.2
264
+ HDGFRP2
265
+ CTC-512J12.6
266
+ CTB-50L17.14
267
+ APOC4-APOC2
268
+ CTB-129P6.11
269
+ AC074212.3
270
+ AC011530.4
271
+ CTC-273B12.7
272
+ CTB-60B18.6
273
+ CTD-3148I10.9
274
+ CTC-326K19.6
275
+ CTD-2616J11.11
276
+ AC018755.1
277
+ BIRC8
278
+ CTB-167G5.5
279
+ LILRA3
280
+ KIR3DX1
281
+ CTD-2587H24.4
282
+ CTD-2105E13.6
283
+ CTB-54O9.9
284
+ AC003002.4
285
+ AC003002.6
286
+ AC004076.7
287
+ AC004076.9
288
+ AC003005.4
289
+ AC003006.7
290
+ CTD-2583A14.10
291
+ CTD-2583A14.9
292
+ CTD-2368P22.1
293
+ CTD-3138B18.4
294
+ AC010642.1
295
+ AC012313.1
296
+ AC104532.2
297
+ AC025278.1
298
+ CTD-2207O23.12
299
+ CTD-2207O23.10
300
+ CTD-3214H19.4
301
+ CTD-3214H19.16
302
+ CTD-3193O13.9
303
+ AC010336.1
304
+ AC004528.1
305
+ RP11-426L16.10
306
+ ADAMTSL4-AS1
307
+ AL645728.1
308
+ RP11-126K1.2
309
+ AL589765.1
310
+ RP11-201K10.3
311
+ OR10J3
312
+ RP11-190A12.7
313
+ AL590560.1
314
+ AL590714.1
315
+ C1orf134
316
+ FMO6P
317
+ METTL13
318
+ C1orf220
319
+ AL162431.1
320
+ RP13-279N23.2
321
+ RP11-480I12.4
322
+ AC096644.1
323
+ RP4-559A3.7
324
+ TMEM78
325
+ TSNAX-DISC1
326
+ MDS2
327
+ AL646016.1
328
+ AL590483.1
329
+ RP1-317E23.6
330
+ RP1-27O5.3
331
+ FKSG48
332
+ RP11-268J15.5
333
+ RP11-446E24.4
334
+ MROH7-TTC4
335
+ RP5-1052I5.2
336
+ RP11-147C23.1
337
+ RP4-576H24.4
338
+ AL121761.2
339
+ AL096677.1
340
+ RP4-734P14.4
341
+ AL035252.1
342
+ FAM182B
343
+ RP11-410N8.4
344
+ AL121901.1
345
+ RP1-309K20.6
346
+ RP11-352D3.2
347
+ SYS1-DBNDD2
348
+ AL031663.2
349
+ AL031663.1
350
+ PRNT
351
+ PPP4R1L
352
+ RP11-93B14.6
353
+ RP5-850E9.3
354
+ AF165138.7
355
+ AP000275.65
356
+ AP000295.9
357
+ AP000304.12
358
+ SMIM11
359
+ AP000322.53
360
+ AP000688.1
361
+ DSCR4
362
+ DSCR8
363
+ AP001631.10
364
+ AP001055.1
365
+ AC006946.15
366
+ AC002472.13
367
+ AP000350.10
368
+ AP000350.4
369
+ SPECC1L-ADORA2A
370
+ RP4-539M6.19
371
+ AC005003.1
372
+ RFPL3S
373
+ AL031590.1
374
+ AL035681.1
375
+ RP1-32I10.10
376
+ FLJ27365
377
+ LL22NC03-75H12.2
378
+ CHKB-CPT1B
379
+ AC012493.2
380
+ AC104794.4
381
+ FLJ20373
382
+ AC108868.1
383
+ AC092687.4
384
+ LINC01101
385
+ AC114783.1
386
+ AC023469.1
387
+ AC008271.1
388
+ AC011997.1
389
+ AC079354.1
390
+ AC079354.2
391
+ AC017081.1
392
+ AC017104.2
393
+ MGC4771
394
+ AC106876.2
395
+ AC112715.2
396
+ AC112721.1
397
+ UBE2F-SCLY
398
+ AC016757.3
399
+ AC062017.1
400
+ AC079612.1
401
+ AC093802.1
402
+ PRR21
403
+ AC013469.1
404
+ AC011298.1
405
+ AC104809.3
406
+ SF3B14
407
+ RP11-507M3.1
408
+ AC013449.1
409
+ AC109829.1
410
+ RP13-512J5.1
411
+ AC007401.2
412
+ AC007382.1
413
+ RP11-761B3.1
414
+ AC138655.1
415
+ AC007040.11
416
+ MGC10955
417
+ CATX-2
418
+ RP11-287D1.3
419
+ AC111200.1
420
+ AC092675.3
421
+ RP11-438J1.1
422
+ RP11-553A10.1
423
+ RP11-484M3.5
424
+ TPRXL
425
+ RP11-434D12.1
426
+ RP11-211G3.3
427
+ RP11-447L10.1
428
+ LINC00692
429
+ SACM1L
430
+ AC018816.3
431
+ RP11-3B7.1
432
+ CTD-2330K9.3
433
+ XXcos-LUCA11.5
434
+ RP11-155D18.14
435
+ LINC00696
436
+ RP5-966M1.6
437
+ RP11-766F14.2
438
+ AP001816.1
439
+ RP11-455G16.1
440
+ AC079341.1
441
+ RP11-62N21.1
442
+ RP11-542P2.1
443
+ RP11-6L6.2
444
+ RP11-171N4.2
445
+ RP11-487E13.1
446
+ RP11-279O9.4
447
+ AC110771.1
448
+ RP11-215A19.2
449
+ RP11-503N18.3
450
+ RP11-180C1.1
451
+ AC093323.1
452
+ AC097381.1
453
+ RP11-9B6.1
454
+ RP11-1396O13.13
455
+ RP11-1C1.5
456
+ AC011366.3
457
+ CTC-554D6.1
458
+ CTC-487M23.8
459
+ CTD-2287O16.3
460
+ CTC-432M15.3
461
+ CTD-2410N18.5
462
+ AC010441.1
463
+ AC112205.1
464
+ CTB-78H18.1
465
+ AC027309.1
466
+ AC136604.1
467
+ RP11-1084J3.4
468
+ CTD-2228K2.5
469
+ CTD-2203A3.1
470
+ RP11-45H22.3
471
+ AC008914.1
472
+ CTC-236F12.4
473
+ CTD-2117L12.1
474
+ RP11-404L6.2
475
+ AC008387.1
476
+ AC008394.1
477
+ CTD-2215E18.1
478
+ RP11-661C8.3
479
+ OFCC1
480
+ AL033381.1
481
+ RP11-637O19.3
482
+ RP3-422G23.4
483
+ RP3-468K18.5
484
+ AL590867.1
485
+ RP11-514O12.4
486
+ C6orf123
487
+ AL009178.1
488
+ SCAND3
489
+ HCG27
490
+ ATP6V1G2-DDX39B
491
+ XXbac-BPG32J3.20
492
+ XXbac-BPG181M17.5
493
+ GGNBP1
494
+ COX6A1P2
495
+ C6ORF50
496
+ RP11-444E17.6
497
+ MTRNR2L9
498
+ RP11-257K9.8
499
+ RP11-321N4.5
500
+ RP1-102H19.8
501
+ C6ORF165
502
+ AL079342.1
503
+ FLJ00325
504
+ TSRM
505
+ AC009365.3
506
+ RP11-1220K2.2
507
+ PAXIP1-AS2
508
+ HTR5A-AS1
509
+ AC099552.4
510
+ BLACE
511
+ AC008060.7
512
+ AC009403.2
513
+ AC006967.1
514
+ AC006372.1
515
+ AC073333.1
516
+ AC005082.1
517
+ KIAA0087
518
+ RP1-170O19.20
519
+ AC091801.1
520
+ RP11-89N17.1
521
+ PP13004
522
+ AC096582.1
523
+ AC011294.3
524
+ FLJ20306
525
+ AC068533.7
526
+ AC005008.2
527
+ AC002451.1
528
+ GS1-259H13.10
529
+ RP11-67H2.1
530
+ ZHX1-C8ORF76
531
+ AC138647.1
532
+ RP11-520P18.5
533
+ AC037459.4
534
+ RP11-521M14.2
535
+ RP11-598P20.5
536
+ RP11-738G5.2
537
+ C8orf44-SGK3
538
+ RP11-664D7.4
539
+ AC090574.1
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+ SLC6A4,1.0,0.128064,0.194622,0.0460676,0.306704,0.0419469,1.64547,1.77677,0.0461832,0.0637374,0.688546,0.248634,0.172285,0.130236,0.0889003,2.33887,0.0074,0.0023,0.0035,0.761866033,0.854880095,0.156509966,0.503581992,0.504553919,-0.6
98
+ CA4,1.0,3.4822,16.3461,9.74304,3.97963,0.16907,0.501134,0.434169,0.045292,2.99493,1.0863,10.8483,12.5266,36.1839,0.452809,2.16362,0.0361,0.0031,0.0173499999999999,0.209607884,0.01080885,0.344252042,0.500312556,0.500397364,0.22
99
+ CHRNB1,1.0,8.94195,8.1087,4.14626,5.76212,7.79498,5.76331,9.51713,3.92235,92.0056,4.33191,7.38551,7.20542,2.01193,29.2805,6.90787,-0.0771,0.0003,-0.0072,0.322640508,4.34e-06,0.120892867,0.500019465,0.514229726,-0.4
100
+ NDUFV2,1.0,50.9102,82.218,111.358,50.5888,99.0883,72.4749,138.145,80.28,143.358,67.9897,52.3538,48.7008,20.4194,85.9969,3.9784,0.0023,0.0022,-0.0061,0.287445456,0.007630223,0.104239245,0.500011668,0.500372421,0.13
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102
+ KEAP1,1.0,39.7786,18.5452,22.615,43.4659,21.2222,50.7641,36.7936,52.9517,88.3333,31.1007,34.0948,34.9408,11.5759,37.5018,0.90037,0.0061,0.0223,0.0044,0.764716923,0.251629058,0.152685426,0.507082169,0.509030267,-1.13
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105
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106
+ GRIN2D,1.0,0.787343,0.356308,0.16909,1.21012,0.132584,0.234945,0.313998,6.80052,0.0586515,2.87621,0.494843,0.571317,0.18225,0.544408,2.33202,-0.0006,0.0021,0.0154,0.739532948,0.998648757,0.137368134,0.500534109,0.501601548,-0.8184285714285717
107
+ INSR,1.0,13.4636,15.9292,17.1603,43.6946,22.9703,5.77095,16.1545,7.83435,17.5548,12.5475,90.8835,29.4736,1.44396,28.0393,2.59553,-0.0041,-0.0006,-0.0024,0.743839204,0.186547844,0.388304341,0.501230107,0.507302998,-2.14
108
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109
+ ATP1A1,1.0,100.846,498.37,70.317,131.992,34.1715,221.73,269.533,208.799,41.7337,118.85,70.6004,178.044,38.7864,112.426,1.16887,-0.0054,-0.0015,-0.0012,0.824708164,0.99999385,0.498852198,0.501644697,0.508380947,-1.0
110
+ IL6R,1.0,5.5952,4.1569,3.64374,25.9063,38.0337,7.38618,6.70894,4.54585,67.242,6.17905,23.9987,13.5651,52.6906,7.56139,7.10856,-0.0053,0.0027,0.003,0.54232949,0.047869037,0.221850675,0.500636703,0.502625058,-0.16
111
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112
+ ATP1A4,1.0,0.0859929,0.0350559,0.0684938,0.13657,0.0101497,0.0592329,0.0634868,0.0,0.849222,27.8959,0.223699,0.136271,0.0491981,0.0232253,5.01673,-0.00405,0.0028,-0.002,0.53460449,1.9e-11,0.077686188,0.500293305,0.510034014,0.55
113
+ ADORA1,1.0,43.1844,2.70811,3.55036,1.40266,0.158664,0.812021,0.045492,0.302798,0.708883,35.5194,6.46529,1.59342,0.0399672,0.21497,0.97171,-0.0115,0.0007,-0.0114499999999999,0.572527647,0.021258038,0.255110487,0.500337338,0.501445773,-0.2
114
+ REN,1.0,0.0,7.60327,0.0,1.80489,0.373362,0.204322,0.0,0.0668369,0.0,1.42401,0.163903,0.242582,0.0,0.663159,1.23092,0.00755,0.0173,0.0032,0.352524012,0.006604139,0.10559924,0.605228118,1.0,-0.4
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116
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117
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118
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130
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+ CACNA1D,0.0,0.962374,0.988662,0.0387712,4.79846,0.917359,0.284167,0.730862,0.0175695,0.0234157,3.00258,2.75374,11.1441,0.0988922,8.35908,5.35831,-0.0166499999999999,-0.0068,-0.01015,0.693386316,1.0,0.090414545,0.533446007,0.64503349,-3.51
208
+ CACNA2D2,0.0,2.07196,3.02187,0.842963,3.49425,0.339362,0.722843,0.126768,0.189158,1.08735,14.7574,2.16559,16.2288,0.868236,0.500165,4.92605,-0.0175,-0.006,-0.0156,0.622939706,0.999693297,0.069480122,0.500156588,0.500399496,-0.55
209
+ CACNB2,0.0,2.18361,2.67937,7.71557,13.9779,2.14918,3.01403,1.76349,2.61572,0.369301,1.93115,1.14454,23.9603,0.0949219,4.67696,5.48442,0.00855,0.00355,0.0067,0.602114379,0.001820338,0.086888835,0.503104558,0.504264653,-0.71
210
+ CACNB4,0.0,1.81005,0.252611,0.0576818,0.571744,0.0361896,1.12463,3.22076,0.063647,0.0542263,3.74133,0.335235,2.22282,0.0565969,0.424746,0.75555,-0.01635,-0.006,-0.0189,0.638582647,0.011363582,0.092927581,0.503162716,0.504294309,0.08
211
+ CAMK2B,0.0,9.00619,0.709074,22.8407,0.275553,2.36737,0.332368,0.183398,0.18279,37.6709,2.557,0.282419,54.1038,0.0491604,0.278357,6.78858,-0.0078,-0.0096499999999999,-0.0012,0.736296356,0.468620194,0.202883222,0.501396899,0.504062823,-0.62
212
+ CAST,0.0,25.4072,44.5983,62.741,63.4628,21.3231,147.525,39.3169,93.9037,85.3963,59.966,32.5811,39.0108,37.05,40.0837,5.5877,-0.009937142857142856,-0.004943571428571429,-0.0022842857142857122,0.429466158,1.56e-06,0.080400336,0.500011489,0.5000463,0.71
213
+ CCND1,0.0,23.8804,30.299,24.6997,19.865,25.7132,96.5525,5.42097,202.003,1.39123,5.17559,20.1511,40.9923,0.255782,27.445,0.41759,-0.0127,-0.006,0.0016,0.830946863,0.238186362,0.176330554,0.551842227,0.669546701,-0.32
214
+ CLCN6,0.0,23.6955,12.951,7.28334,27.3258,8.4081,9.77182,18.5344,14.7523,7.74102,38.8683,18.7503,35.3001,3.17555,17.9895,4.06812,0.0895,0.0292,0.065,0.575333595,0.163974191,0.0803927,0.0,0.0,-1.57
215
+ CYP11B2,0.0,0.0,0.0,0.0,0.0,0.00948479,0.0,0.0,0.0,0.0,0.191225,0.0212902,0.0,0.0,89.3696,3.67149,0.0091,0.0109,0.0006,0.111908376,3.93e-13,0.068743802,0.6501142,1.0,0.56
216
+ CYP1A2,0.0,0.0,0.0669868,0.0,0.03956,71.5396,0.0152555,0.0593256,0.0,0.0,0.105563,0.0153888,0.0143068,0.0197973,0.0128524,2.59593,-0.0020499999999999,0.0001499999999999,0.03345,0.111908376,3.29e-10,0.079824636,0.504514008,0.516689187,-0.6
217
+ CYP2C19,0.0,0.0251461,0.00383093,0.0,0.0,13.2527,3.73312,0.0,0.0,0.0,0.0750059,0.0,0.0,0.0,0.0,4.10454,0.01215,0.0107,0.04485,0.111908376,2.54e-10,0.090642318,0.503861536,0.516324725,0.71
218
+ DSP,0.0,1.57016,17.8792,52.8373,9.40431,21.3464,647.419,0.295742,9.61245,0.464807,3.21316,4.59204,14.7673,0.289415,16.141,13.95902,0.015,0.0269,-0.00645,0.747131348,0.999901543,0.281691357,0.500020384,0.509119108,-2.23
219
+ DUSP1,0.0,185.416,334.694,122.691,922.405,422.046,426.886,8.24415,276.693,168.692,135.061,467.519,564.847,884.653,246.629,3.19307,0.0050250000000000026,0.004022142857142859,-0.0034964285714285726,0.848568261,0.020500202,0.068746567,0.63928196,1.0,-0.846
220
+ EDN1,0.0,7.52479,8.77697,3.40171,17.5142,1.52907,5.74405,10.8395,2.44735,4.51796,7.74557,16.4839,2.08775,0.580975,2.28856,5.42362,-0.0143,-0.0188,0.00185,0.449802697,0.081020067,0.138037323,0.577262555,0.803556825,-0.21
221
+ EDNRA,0.0,1.62523,6.51635,6.15045,43.6706,1.03118,4.47396,0.108652,5.60748,1.94008,6.46399,8.08348,4.52835,0.0173223,3.43355,0.24247,0.0266,0.0187,0.01885,0.800036311,0.986016088,0.068017424,0.0,0.0,-0.38
222
+ GJA1,0.0,67.0512,16.6665,69.2371,53.373,2.1737,105.928,0.356516,199.746,6.87475,35.6586,3.46189,39.9564,0.305834,439.809,0.95342,0.01935,0.0166499999999999,-0.00435,0.833060265,0.21554685,0.718324976,0.500748396,0.587983487,-0.27
223
+ GUCY1A3,0.0,3.20593,10.2218,7.30693,8.40534,1.48713,1.96973,2.24228,0.195905,1.81992,0.803821,4.96334,5.61009,0.210217,1.88244,3.05449,0.002877142857142851,0.0023835714285714315,0.003190000000000001,0.593201816,1.41e-06,0.10944729000000009,0.5061550189380952,0.509662768557143,-1.0
224
+ GUCY1B3,0.0,10.4957,11.0472,9.41733,16.8543,2.82645,3.96264,14.9786,4.06031,3.77522,2.78732,9.78858,9.7685,0.683765,2.20439,1.21444,0.005837142857142858,0.003737857142857142,0.004192142857142857,0.636561334,0.000916634,0.11000122978571429,0.5047998630714287,0.509589598057143,-0.56
225
+ HFE,0.0,1.54238,2.58984,1.07014,5.67733,3.24452,3.61023,2.41589,15.6539,0.614463,1.55111,7.80063,1.3168,0.806209,8.81602,5.56445,-0.01575,0.00205,-0.0015499999999999,0.146511853,8.5e-07,0.279883438,0.333964363,0.42850262,0.08
226
+ HSPA4,0.0,35.1592,31.5656,25.8929,46.2009,17.3389,66.0589,106.24,105.368,43.8031,92.3215,38.8936,50.8541,14.1173,49.9197,3.72927,-0.0168,-0.0128,-0.0124,0.852899194,0.999958226,0.082242709,0.501285754,0.505112308,-0.15
227
+ ITGB5,0.0,19.8872,42.6282,27.0476,50.9151,28.863,60.1754,1.02111,157.887,15.6952,19.041,49.842,31.1453,2.93269,32.6503,7.86718,0.05155,0.00935,0.0112,0.705665529,0.000480019,0.157663429,0.500118865,0.503167886,-0.28
228
+ KCNJ11,0.0,2.59443,3.52342,7.41361,0.790484,0.604791,0.965794,0.300937,0.0179232,87.0756,1.13664,1.61115,10.7255,0.0713407,0.593442,2.86874,-0.0593,-0.0347,-0.0255,0.714407027,0.31472413,0.350368608,0.569181778,0.780916865,0.24
229
+ LDLR,0.0,11.3698,14.766,4.51271,49.6503,22.6645,58.3518,31.6294,59.4171,1.71902,7.04122,13.7219,9.28987,3.75832,91.7779,5.13173,0.0066,-0.0077,0.0246,0.485596061,2.59e-16,0.571297355,0.500098515,0.565151788,-1.85
230
+ MME,0.0,0.210303,5.5963,0.675854,1.57504,5.8127,0.35745,0.0780681,640.484,7.75724,0.921413,2.46636,0.501727,22.1759,0.206853,2.58504,0.0097,0.006,0.0003,0.743839204,2.19e-08,0.285645073,0.510092567,0.512957147,-0.69
231
+ MYO9B,0.0,56.9294,13.0271,10.7193,39.4992,11.9914,24.4118,105.092,46.6172,6.37271,81.3088,115.293,26.0401,65.413,29.945,4.75747,-0.009,-0.0015,-0.004,0.792072892,0.999998877,0.150436946,0.500073417,0.503278418,-0.86
232
+ NEDD4L,0.0,2.16517,12.882,4.13338,2.24275,2.45612,3.6228,3.8322,1.52243,8.13512,4.1627,2.429,16.2123,1.07456,5.59453,1.22415,-0.00375,-0.00175,-0.0020499999999999,0.824708164,0.999966646,0.153402565,0.630714134,0.802610144,-1.2
233
+ NPPA,0.0,1.96512,0.552606,35.8109,2.0292,1.3644,1.53579,2.29444,0.726573,2.34266,13.3073,3.63131,5.93242,1.68926,1.80967,6.80239,-0.2212,-0.0774,-0.1397,0.244530007,0.016931635,0.137657028,0.637111928,0.806413662,0.86
234
+ NPPB,0.0,0.389542,0.0,26.7743,0.14807,0.114646,0.0895663,0.120796,0.0,0.226661,0.583287,0.120982,0.514502,0.0959771,0.158882,1.20388,0.09235,0.0796,0.0276,0.181705475,0.00038006,0.07979089,0.529412659,0.547695886,0.53
235
+ NPR1,0.0,1.24281,36.6139,7.99649,90.994,2.39363,6.13491,3.70879,0.6951,3.65615,3.86741,4.3411,8.67364,0.128919,14.0193,7.21833,-0.0362,-0.0095,-0.0261,0.711480618,0.000172509,0.092579268,0.65083856,0.96018788,-0.24
236
+ NPR3,0.0,0.0690056,6.39625,3.12747,2.52281,1.30813,4.44726,0.0465167,10.5603,1.09376,0.99814,3.71488,0.339425,0.0514983,2.84903,7.7784,0.004076428571428562,0.007184285714285708,0.0012592857142857121,0.622939706,0.003099263,0.092733579,0.616670811,1.0,0.0
237
+ PDE1A,0.0,9.55194,20.4521,2.14804,11.0839,0.721368,1.72556,0.0230582,0.510758,0.903553,18.0719,1.38829,1.64713,0.0185304,2.37502,1.20066,-0.0057,0.0016,-0.0025,0.54646343,0.730656355,0.079649573,0.528666177,0.849862238,-0.73
238
+ PGR,0.0,0.606114,0.681998,1.75748,45.1429,0.108455,0.366293,0.00860162,0.0966189,0.422668,2.14859,1.44911,1.64211,0.00555133,1.69834,6.92862,0.00325,0.0056,-0.0001,0.833875239,0.884782623,0.080393195,0.50195897,0.503390698,-0.02628571428571429
239
+ PKD2L1,0.0,0.150846,0.0271238,0.0,0.0469471,0.191789,0.0259421,0.029756,0.0,0.0108064,4.34285,3.02365,0.0874236,0.0686577,0.0585381,11.35988,-0.0037,0.0072,-0.0046,0.250911236,6.57e-17,0.200157723,0.500118972,0.549274176,1.01
240
+ PLCD3,0.0,30.7186,8.79362,18.0637,17.8625,0.628377,15.3327,0.579364,16.6327,32.446,19.3525,2.47955,9.05755,0.814911,40.4021,1.91678,-0.1086,-0.06,-0.03205,0.275690168,0.000143297,0.07971031,0.500033134,0.50037082,-0.10228571428571431
241
+ RAD52,0.0,6.44561,9.06297,3.19182,16.1393,4.63894,6.25039,8.02587,9.46846,6.35615,10.289,10.7106,13.0243,1.60273,6.55567,2.96787,-0.0151,-0.0108,-0.0031,0.566305161,2.38e-07,0.091143307,0.500016283,0.504056183,0.51
242
+ SHBG,0.0,0.522775,1.03242,0.192648,0.919316,11.5862,0.197232,0.112384,0.422531,0.336238,12.3003,0.425054,0.969161,0.0345498,1.3208,3.31425,0.0164,0.0457,-0.0195,0.123297259,0.000188842,0.071737066,0.500503691,0.542211421,0.13
243
+ SLC12A2,0.0,38.1753,3.42694,3.91261,7.63253,1.67254,4.41262,14.8188,10.6474,6.0034,15.6647,4.57143,10.7423,0.483363,14.8726,2.34001,-0.01815,-0.0258,-0.0022,0.638582647,0.999438622,0.119126632,0.544764546,0.886001366,-1.31
244
+ SLC14A2,0.0,0.00802375,1.66793,0.0178205,0.0727311,0.0190877,0.02912,0.113287,0.0428142,0.0475561,0.875173,0.131058,0.0972405,0.0411743,1.39574,17.02493,-0.01205,-0.007,-0.00115,0.177065939,8.43e-14,0.090605471,0.500517653,0.500875669,0.28
245
+ SLC2A4,0.0,0.588399,2.15448,59.0967,21.3428,1.46751,6.54885,0.187633,0.16155,148.579,7.21154,0.475975,6.68359,0.463607,5.12207,6.60287,0.1647,0.103,0.0407,0.637993336,0.135386793,0.443624156,0.648131521,0.815279047,-0.18
246
+ SLC5A1,0.0,0.0279019,0.449648,45.4234,0.41317,1.04292,6.02458,0.0276677,0.0219949,0.0397713,6.14332,2.90746,1.81762,0.0157813,0.022321,4.26635,-0.0547,-0.0109,0.0010999999999999,0.684255004,0.008031196,0.081823812,0.500034706,0.500179533,0.33
247
+ TGFB1,0.0,19.2623,46.6335,11.4753,58.8729,8.99936,59.952,155.283,131.659,5.5196,17.7424,156.104,33.8618,306.449,40.4581,4.49902,-0.0038,0.00715,-0.0153,0.831385493,0.354132528,0.318073102,0.505206695,0.689214322,-0.12
248
+ VEGFA,0.0,16.422,110.403,66.8859,103.281,143.583,85.2684,74.4515,111.255,128.949,8.80042,139.717,34.8442,14.7345,56.1953,2.10662,-0.01385,0.00235,0.0048,0.5355995197142855,0.2511384489717,0.156523813,0.317236042,0.442313052,-0.32857142857142874
example/machine_learning/eda/output/correlation_matrix_09.csv ADDED
@@ -0,0 +1,68 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,label_encoded
2
+ label_encoded,1.0
3
+ RVIS_genic_intolerance,0.2834231761093585
4
+ gene_damage_index_score,0.1080606604696786
5
+ Effect_SBP_Median,0.06176840331977978
6
+ CellsEBVtransformedlymphocytes_GTExTPM,0.047884317409676906
7
+ GDI_Phred,0.03452443584619851
8
+ Effect_DBP_Median,0.02107282668718984
9
+ Effect_PP_Median,0.011915546873976545
10
+ HeartLeftVentricle_GTExTPM,-0.0012790055802478263
11
+ KidneyMedulla_GTExTPM,-0.02167051068153317
12
+ Pancreas_GTExTPM,-0.044093488365407225
13
+ Stomach_GTExTPM,-0.054875683998299125
14
+ KidneyCortex_GTExTPM,-0.07356344013333845
15
+ Testis_GTExTPM,-0.08804655417181231
16
+ BrainFrontalCortexBA9_GTExTPM,-0.08808530720440094
17
+ BrainHypothalamus_GTExTPM,-0.10101295769373908
18
+ BrainCortex_GTExTPM,-0.10354087456170588
19
+ BrainSubstantianigra_GTExTPM,-0.10496701050908733
20
+ BrainAnteriorcingulatecortexBA24_GTExTPM,-0.10599524161331074
21
+ HeartAtrialAppendage_GTExTPM,-0.10702758104278196
22
+ CellsCulturedfibroblasts_GTExTPM,-0.10742827911081797
23
+ BrainCerebellarHemisphere_GTExTPM,-0.10984568723255571
24
+ BrainNucleusaccumbensbasalganglia_GTExTPM,-0.11021739208637191
25
+ BrainSpinalcordcervicalc1_GTExTPM,-0.11203259456614614
26
+ Ovary_GTExTPM,-0.11241261240708758
27
+ BrainPutamenbasalganglia_GTExTPM,-0.11539630337547922
28
+ MuscleSkeletal_GTExTPM,-0.11615783728393782
29
+ BrainCaudatebasalganglia_GTExTPM,-0.11835162430776718
30
+ BrainAmygdala_GTExTPM,-0.11890546057607244
31
+ Bladder_GTExTPM,-0.12099624625288737
32
+ AdrenalGland_GTExTPM,-0.12171116886435329
33
+ BrainHippocampus_GTExTPM,-0.12201838825333487
34
+ ColonSigmoid_GTExTPM,-0.12384654294161511
35
+ BrainCerebellum_GTExTPM,-0.12515678817732395
36
+ ColonTransverse_GTExTPM,-0.12899339917728966
37
+ WholeBlood_GTExTPM,-0.12972667662314447
38
+ FallopianTube_GTExTPM,-0.13581277126568536
39
+ ArteryTibial_GTExTPM,-0.13841711316114136
40
+ EsophagusGastroesophagealJunction_GTExTPM,-0.1385775017353678
41
+ Pituitary_GTExTPM,-0.13996872178169084
42
+ EsophagusMuscularis_GTExTPM,-0.14203814830370573
43
+ ExomiserScore_IncreasedBP_MultiHPOTerms,-0.14215999716680963
44
+ pLI_exac,-0.1423573420459094
45
+ NerveTibial_GTExTPM,-0.14450145139710274
46
+ Liver_GTExTPM,-0.1464220930717687
47
+ MinorSalivaryGland_GTExTPM,-0.14992321574739467
48
+ AdiposeVisceralOmentum_GTExTPM,-0.15036951710353955
49
+ SmallIntestineTerminalIleum_GTExTPM,-0.15249833673956517
50
+ AdiposeSubcutaneous_GTExTPM,-0.1575344758522463
51
+ Prostate_GTExTPM,-0.15971330691164004
52
+ Thyroid_GTExTPM,-0.16083687223154272
53
+ CervixEndocervix_GTExTPM,-0.1635435998509674
54
+ Uterus_GTExTPM,-0.16424029013339353
55
+ BreastMammaryTissue_GTExTPM,-0.16593167625860172
56
+ Spleen_GTExTPM,-0.1713355692070839
57
+ Lung_GTExTPM,-0.1732482408625736
58
+ ArteryAorta_GTExTPM,-0.17416021152551614
59
+ ArteryCoronary_GTExTPM,-0.1749046079362666
60
+ CervixEctocervix_GTExTPM,-0.18325658380438636
61
+ EsophagusMucosa_GTExTPM,-0.18628199137814563
62
+ Vagina_GTExTPM,-0.19793988289555028
63
+ SkinNotSunExposedSuprapubic_GTExTPM,-0.20174064344813483
64
+ SkinSunExposedLowerleg_GTExTPM,-0.203969617198286
65
+ ExomiserScore_DecreasedBP_MultiHPOTerms,-0.2525127477502382
66
+ SDI_Drug_Probability,-0.25572464991840904
67
+ SDI_essentiality,-0.26282883261197076
68
+ HIPred_haploinsufficiency,-0.40677939898788296
example/machine_learning/eda/output/correlation_pairs_09.csv ADDED
@@ -0,0 +1,68 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ,label_encoded,BrainSpinalcordcervicalc1_GTExTPM,KidneyMedulla_GTExTPM,KidneyCortex_GTExTPM,HeartLeftVentricle_GTExTPM,HeartAtrialAppendage_GTExTPM,FallopianTube_GTExTPM,EsophagusMuscularis_GTExTPM,Liver_GTExTPM,EsophagusMucosa_GTExTPM,ColonTransverse_GTExTPM,ColonSigmoid_GTExTPM,CervixEndocervix_GTExTPM,CervixEctocervix_GTExTPM,CellsEBVtransformedlymphocytes_GTExTPM,CellsCulturedfibroblasts_GTExTPM,EsophagusGastroesophagealJunction_GTExTPM,BreastMammaryTissue_GTExTPM,Lung_GTExTPM,MuscleSkeletal_GTExTPM,Vagina_GTExTPM,Uterus_GTExTPM,Thyroid_GTExTPM,Testis_GTExTPM,Stomach_GTExTPM,Spleen_GTExTPM,MinorSalivaryGland_GTExTPM,SmallIntestineTerminalIleum_GTExTPM,SkinNotSunExposedSuprapubic_GTExTPM,Prostate_GTExTPM,Pituitary_GTExTPM,Pancreas_GTExTPM,Ovary_GTExTPM,NerveTibial_GTExTPM,SkinSunExposedLowerleg_GTExTPM,BrainSubstantianigra_GTExTPM,BrainPutamenbasalganglia_GTExTPM,WholeBlood_GTExTPM,AdiposeVisceralOmentum_GTExTPM,AdrenalGland_GTExTPM,ArteryAorta_GTExTPM,ArteryCoronary_GTExTPM,ArteryTibial_GTExTPM,Bladder_GTExTPM,BrainAmygdala_GTExTPM,BrainAnteriorcingulatecortexBA24_GTExTPM,AdiposeSubcutaneous_GTExTPM,BrainCerebellarHemisphere_GTExTPM,BrainCerebellum_GTExTPM,BrainCortex_GTExTPM,BrainFrontalCortexBA9_GTExTPM,BrainHippocampus_GTExTPM,BrainHypothalamus_GTExTPM,BrainNucleusaccumbensbasalganglia_GTExTPM,BrainCaudatebasalganglia_GTExTPM,GDI_Phred,gene_damage_index_score,Effect_SBP_Median,Effect_PP_Median,Effect_DBP_Median,HIPred_haploinsufficiency,pLI_exac,SDI_Drug_Probability,ExomiserScore_IncreasedBP_MultiHPOTerms,ExomiserScore_DecreasedBP_MultiHPOTerms,SDI_essentiality,RVIS_genic_intolerance
2
+ label_encoded,1.0,-0.11203259456614614,-0.02167051068153317,-0.07356344013333845,-0.0012790055802478263,-0.10702758104278196,-0.13581277126568536,-0.14203814830370573,-0.1464220930717687,-0.18628199137814563,-0.12899339917728966,-0.12384654294161511,-0.1635435998509674,-0.18325658380438636,0.047884317409676906,-0.10742827911081797,-0.1385775017353678,-0.16593167625860172,-0.1732482408625736,-0.11615783728393782,-0.19793988289555028,-0.16424029013339353,-0.16083687223154272,-0.08804655417181231,-0.054875683998299125,-0.1713355692070839,-0.14992321574739467,-0.15249833673956517,-0.20174064344813483,-0.15971330691164004,-0.13996872178169084,-0.044093488365407225,-0.11241261240708758,-0.14450145139710274,-0.203969617198286,-0.10496701050908733,-0.11539630337547922,-0.12972667662314447,-0.15036951710353955,-0.12171116886435329,-0.17416021152551614,-0.1749046079362666,-0.13841711316114136,-0.12099624625288737,-0.11890546057607244,-0.10599524161331074,-0.1575344758522463,-0.10984568723255571,-0.12515678817732395,-0.10354087456170588,-0.08808530720440094,-0.12201838825333487,-0.10101295769373908,-0.11021739208637191,-0.11835162430776718,0.03452443584619851,0.1080606604696786,0.06176840331977978,0.011915546873976545,0.02107282668718984,-0.40677939898788296,-0.1423573420459094,-0.25572464991840904,-0.14215999716680963,-0.2525127477502382,-0.26282883261197076,0.2834231761093585
3
+ BrainSpinalcordcervicalc1_GTExTPM,-0.11203259456614614,1.0,0.6796058975390159,0.9117549510553989,0.5893266458265987,0.001992768391700766,0.5317083704175408,0.5611564624303097,0.7592398922794857,0.32437928554981277,0.6775232613832909,0.6092370436574024,0.5962013186342286,0.6491746574704791,0.5448664935340751,0.4826790164854049,0.5498506626082662,0.6147999441151181,0.5153764381221363,0.3753457583108644,0.44747016367909487,0.5319809430319778,0.517928664628893,0.6577599303237385,0.649620120735805,0.8395853365056998,0.4869405219570486,0.6441265394417678,0.39988855682084445,0.464455973470687,0.5504631869466922,0.5031396746200346,0.7226303860132006,0.47172743217555696,0.35894294206352645,0.9042940807815283,0.8884507011914627,0.28148371911372955,0.5172808582893265,0.8321302760274959,0.3782837996953189,0.5314507959583462,0.3833735844936982,0.5794945533182639,0.9125174798159317,0.9455002509649759,0.633482718535567,0.8106469536929755,0.861510902452616,0.940353925150627,0.9182607125284874,0.960619444893469,0.9505947381673485,0.891771343488558,0.8921872133137487,-0.0483910723883571,-0.03950679851218303,0.017936229876300648,-0.01781650814718152,-0.08040559577505636,0.06065659441042486,-0.043432213890988246,0.3140302824287986,0.053979299488637965,0.035376410175098974,0.24214192545664703,-0.07586671732382692
4
+ KidneyMedulla_GTExTPM,-0.02167051068153317,0.6796058975390159,1.0,0.8537567088559503,0.8256030616310982,0.006821017314393632,0.6701670626526705,0.751004503800292,0.17650151129866198,0.4818179383872879,0.850462807826265,0.761903955592732,0.652439403611431,0.6427766178440406,0.8271258137711381,0.6912555667786319,0.7469453740285205,0.6346687544331094,0.598897624831473,0.4665201303446962,0.5462991924783985,0.7125019391463274,0.7257606662814717,0.5614077930445457,0.9124723627493432,0.5255079088485728,0.7282452771505579,0.7975987253443769,0.3940281168481481,0.6316876857122377,0.659682504616009,0.7960011493345507,0.6514354357921354,0.6106126802547538,0.373200996350908,0.3805044553142882,0.3610675693984115,0.3944554584621044,0.5896658757701525,0.2657325657321138,0.48782905379906,0.6032450560269856,0.5234830499323185,0.7493821860079188,0.4012980682348168,0.5826607664638421,0.6328431559295503,0.7186434323817438,0.6425866640662152,0.686754681070624,0.7417068152640129,0.5446844401476472,0.5204661299669158,0.38262890524534804,0.3757053223753441,-0.10064255545796075,-0.060856971056112874,0.007239526169803727,-0.007571856149517937,-0.04253853688876938,0.08377017993083098,-0.005911219013336211,0.12424027150787248,0.01746931185558041,0.02823576833337578,0.09764786976417995,-0.06967034955300927
5
+ KidneyCortex_GTExTPM,-0.07356344013333845,0.9117549510553989,0.8537567088559503,1.0,0.6626942357522215,0.004502357642435222,0.562070598843417,0.5837991901045,0.612869784372932,0.37710335152223445,0.7512725937769232,0.6232008504300127,0.5892895214970207,0.6294928019770588,0.6446606481962597,0.5659859127942296,0.5810298336080627,0.6250832557136953,0.5470928004349452,0.35563850188481727,0.46603262250766375,0.5793834950835759,0.6319780656472659,0.5850122226470582,0.7352249701737116,0.7696053132063597,0.5865287018219846,0.7427294599499668,0.40028287226059006,0.49843649512519145,0.5639224551428157,0.6244447029989346,0.6974676739413657,0.4929434897690689,0.3667964751029147,0.7837813053795536,0.7662405117671736,0.29754271833065765,0.5377433452459394,0.706474479074866,0.3919829138903595,0.5383079392527897,0.40236911277754045,0.6155956278146751,0.783978322303616,0.8567728933905934,0.63705215496289,0.821147656997096,0.8250284547193565,0.8820226154290687,0.8951114396674046,0.8532068426157572,0.8512760164528279,0.7805472818925837,0.7722016055920844,-0.057228802564823565,-0.04154635364190749,0.033087131935377906,0.020518874192174463,-0.060205137244354855,0.048897196886476646,-0.04750954214435673,0.2817628275605469,0.01352756103743666,0.02306306016276932,0.217802060289504,-0.07588312756123261
6
+ HeartLeftVentricle_GTExTPM,-0.0012790055802478263,0.5893266458265987,0.8256030616310982,0.6626942357522215,1.0,0.047908774904635916,0.484274184388537,0.7179276531459241,0.05451410821360996,0.33809964460090935,0.6589464006713222,0.7265499905457563,0.5380089562276914,0.48060745295238944,0.8562661008766871,0.646970788554082,0.6720267921157458,0.4106690947870216,0.3400245925313797,0.5847415393600365,0.34756508920575047,0.5727475589580617,0.4218507005536641,0.4865929070278956,0.8431094045148161,0.3340270177615383,0.39551416054888855,0.5002487313134948,0.2016619527670862,0.4329138181243132,0.4394088732085039,0.5988837385764859,0.4563109013759334,0.402308620307246,0.2035654120709413,0.30165502694684937,0.2809701579688133,0.19971816027486167,0.39093365724039586,0.14552665535085613,0.290822027452984,0.40550079218211826,0.3407149046902809,0.6093992565067481,0.34224898158664796,0.5577108076655548,0.4339788218195127,0.5479830234836945,0.5050679673419745,0.6469741644897606,0.6815387718765313,0.4901931165651342,0.4614477840599223,0.2970344748134275,0.2975996700681867,-0.09163820522222213,-0.05283192616146207,0.026427798447649305,0.0076019743049141365,-0.02257333714291724,0.012914813759531012,-0.06501276739250508,0.009827500023728878,0.054515970933755535,0.03358101836181317,0.005953282832086753,-0.02358230128177764
7
+ HeartAtrialAppendage_GTExTPM,-0.10702758104278196,0.001992768391700766,0.006821017314393632,0.004502357642435222,0.047908774904635916,1.0,0.000654004270124483,0.003345199009847742,-0.003912758268034805,-0.005004037604928648,-0.0022117513263845206,0.0023741532595674695,-0.00615309968195764,-0.0033503258606969732,0.006858552305399583,-0.0027895083267210127,0.003703178496338783,0.001676605717855317,0.0019797409531470533,-0.0005093879213901106,-0.00012410073346688568,-0.0020964003798834585,-0.0001844682378847994,0.007684913248943218,0.004926419237620743,-0.0017504940394389437,-0.0026493529275747724,-0.0051833763874048954,-0.001085769436972911,0.003128655468682689,0.0024037884401483123,0.00022187494640261483,0.0019543344883450474,0.0017733731710850434,-0.002595131521421619,0.0006112343178353907,-0.0012398320517922696,0.0029789945668134148,0.0037358157816482097,-0.0019862525244748633,0.0018226222319426841,0.0030304071452035325,0.003828098060859921,0.002747777242010138,0.0007832812543148788,0.0035696059342149077,0.0028696105034685146,-0.004411310326155257,-0.004624120196224386,0.004680889126373811,0.0034899931565208274,0.001251682859257785,0.0009639525417464096,-0.0011579981185912203,-0.0014146107519282239,0.0362656945921665,0.009229616131654163,-0.4216795818708863,-0.26360243470260514,-0.4281421689300942,-0.06373045585147878,-0.050849211191205494,-0.0011405638665304093,0.06885549728032013,0.09011230963045988,0.013750888637047069,0.08775119930089342
8
+ FallopianTube_GTExTPM,-0.13581277126568536,0.5317083704175408,0.6701670626526705,0.562070598843417,0.484274184388537,0.000654004270124483,1.0,0.872501452518294,0.19113636971909517,0.6154407564408106,0.8215474155401213,0.8814670700276321,0.8069206169293176,0.9125041261918987,0.4391800970194208,0.5849187676942702,0.9301910966849604,0.9612824476356556,0.9448607431756011,0.5326343565585194,0.89732015871696,0.9214164283465814,0.8103356429022702,0.5413520919346398,0.8121830601241095,0.6850433367409299,0.8317688603923651,0.6502774158078486,0.718561576793404,0.9648183602689243,0.9225842342403344,0.6638667587232991,0.8969595269299722,0.9689861789930363,0.63387353146358,0.23856327875899555,0.2208760618379533,0.8332833279981576,0.9519145177171942,0.20857372914050962,0.9070664366727437,0.9514709967092186,0.9360929278578527,0.9739357712337343,0.25142849469437006,0.3393656196968242,0.9474115114746119,0.38877441758880193,0.39084009992647883,0.40867480712035575,0.3973386235573356,0.35927291225782415,0.3282161601570222,0.22465464937358373,0.23012635096396555,-0.08441675920835694,-0.06287679793299308,-0.05695845480390767,-0.05372292558113148,-0.09738720568926024,0.1574861568213442,-0.0019310337834866284,0.05211544888203124,0.03309418469992264,0.0919013637210546,0.03206724073300954,-0.10745108668750433
9
+ EsophagusMuscularis_GTExTPM,-0.14203814830370573,0.5611564624303097,0.751004503800292,0.5837991901045,0.7179276531459241,0.003345199009847742,0.872501452518294,1.0,0.08665547866375192,0.5679372896949803,0.8394098131385779,0.9408270339028773,0.8424162566422471,0.8795417294394179,0.6057230148438177,0.6848229468555097,0.9868191938879064,0.8154108276646339,0.7822019183644581,0.6409687081558626,0.7966193440146261,0.8755015044755007,0.7333364816429047,0.5911800946194443,0.8837416025814884,0.5536653737668884,0.749687933139338,0.6490768170541015,0.6007542995246582,0.8554365649552637,0.8247379702454084,0.6704502560989234,0.763355392775354,0.8382880424599083,0.5412418463742401,0.23366297632628744,0.21616717412688521,0.6500032790370007,0.8128899734613525,0.1658397773166515,0.7799768002094462,0.8276371823593692,0.7862328126619478,0.9343514424083635,0.28192040949008645,0.44397437586531135,0.8086907665610096,0.44968293090941197,0.43505214684569354,0.5201592277769433,0.5290029370117273,0.41067574768585136,0.36541955185710134,0.23167430693221727,0.23785156223779358,-0.11568686089317651,-0.08030681884175953,0.042964661354308625,0.029812735064566245,-0.04084400164598159,0.1489714098197524,-0.027352633808375718,0.13533939632047626,0.055756193546737,0.0892810034883204,0.09846606148686456,-0.09302542938828162
10
+ Liver_GTExTPM,-0.1464220930717687,0.7592398922794857,0.17650151129866198,0.612869784372932,0.05451410821360996,-0.003912758268034805,0.19113636971909517,0.08665547866375192,1.0,0.08315509498227587,0.2549660036223039,0.1483207777859679,0.21932557362320013,0.3282460894419359,-0.0009581392831668119,0.05407750087589714,0.09957438412628299,0.3541983429677279,0.2748571432149188,0.06640200377838362,0.18925223163424057,0.13663354025642638,0.22839923936288337,0.34431535661182483,0.11881767050512805,0.7234229528930027,0.1706630944441941,0.3301254547267825,0.2668136404517619,0.14149887427030208,0.22847251829085127,0.08247834141232456,0.4415544061133152,0.16505892085393437,0.2260242586703525,0.9065588923015353,0.9104378907501288,0.10392488515035457,0.2585613902672338,0.9118745557916814,0.15327718674304167,0.2704112578409049,0.12921321356411294,0.16242926897891408,0.8935184507432752,0.7680139254539396,0.37209025599458434,0.5747877218882905,0.6716995117660168,0.6885567520782843,0.6238543157194781,0.8333885250736817,0.835138973487169,0.889013751177685,0.8998679682304482,0.04345708016649627,0.008398746314696889,0.043866070932461414,0.002634165604923274,-0.03175884058596098,-0.030166506310639697,-0.061039308656080205,0.325706496623045,0.09380967291231,0.055702528710720615,0.2451953323337446,-0.0285384233525611
11
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12
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14
+ CervixEndocervix_GTExTPM,-0.1635435998509674,0.5962013186342286,0.652439403611431,0.5892895214970207,0.5380089562276914,-0.00615309968195764,0.8069206169293176,0.8424162566422471,0.21932557362320013,0.5459245299575083,0.7721654866008574,0.7955999074510631,1.0,0.9446122908707111,0.5662849769564454,0.6961465003049867,0.8239350489628613,0.7418264685420959,0.6814189167682142,0.5078070325001571,0.7491095547008577,0.8977178451738423,0.6884799033644237,0.5903910546543816,0.7678681345631712,0.6255008684472504,0.6836154062404345,0.6528371873687955,0.5663582463990093,0.7638812205778801,0.7527788667001226,0.7257225652491508,0.8208709535968942,0.7219828068751041,0.5220642444118788,0.3523468730264789,0.34021920899530667,0.5192663989955675,0.701935652256858,0.3200193326150396,0.6738671876350192,0.7238739242311958,0.6437719381173412,0.8276090403578017,0.39949680242033575,0.5100745256867593,0.722343014080657,0.4834705476879891,0.5013465312430893,0.5535046513743868,0.5447335266724729,0.4825214034230395,0.4488935976649336,0.3558820646044778,0.36114043658846845,-0.10114690654677783,-0.07136724728166435,-0.10142651137680717,-0.08642818344838112,-0.16416610218554262,0.2050316188505986,0.04337812906335837,0.2234130986127902,-0.01717574092097553,0.011878940367545872,0.17700197618338462,-0.11605685033607466
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+ CervixEctocervix_GTExTPM,-0.18325658380438636,0.6491746574704791,0.6427766178440406,0.6294928019770588,0.48060745295238944,-0.0033503258606969732,0.9125041261918987,0.8795417294394179,0.3282460894419359,0.5959521557286355,0.8057478916290585,0.8357375658707915,0.9446122908707111,1.0,0.45621695730714784,0.6366554917548408,0.8914317890743171,0.8988797865262244,0.8508093901323257,0.5102623896583561,0.8745667062002372,0.9095807019323909,0.7711106444885247,0.5938874646240113,0.7675488763292626,0.7422642680780115,0.7712612995188244,0.66699411217996,0.7110384352677133,0.8811703081156143,0.8558520575508605,0.6701209880002099,0.901200081167771,0.8646709052873875,0.6363951832136462,0.41437259782860325,0.4016534641671171,0.698458318772462,0.8681409664990509,0.39749769180078925,0.8323368360460748,0.8791054032545292,0.811897838222041,0.9163918122450176,0.4492951489983893,0.5259525528516157,0.8852379786529403,0.47484893374066056,0.5066276823272532,0.5593947552113667,0.5374427379352621,0.5240236332788719,0.4914040907674608,0.4111778409585057,0.41859243366369414,-0.09345108193931621,-0.06726401370966546,-0.056642374372956945,-0.04738386506660048,-0.13171177171912674,0.18140891443754367,-0.0030188906120189284,0.21184037505425374,0.008557300205558258,0.056216716830622716,0.15536822725598556,-0.10552052486987552
16
+ CellsEBVtransformedlymphocytes_GTExTPM,0.047884317409676906,0.5448664935340751,0.8271258137711381,0.6446606481962597,0.8562661008766871,0.006858552305399583,0.4391800970194208,0.6057230148438177,-0.0009581392831668119,0.31664806796928785,0.6316200768835016,0.6372896005164697,0.5662849769564454,0.45621695730714784,1.0,0.7079618550353243,0.5678357576737981,0.3369455305444299,0.27364988330458706,0.4205539225273178,0.27516152243179687,0.5764842163861827,0.40175024357880945,0.45238766387752233,0.806925145147491,0.31069744467904126,0.39997389277496886,0.5496467822830712,0.10957526455096012,0.3663722748250756,0.3975948845237271,0.744709806416782,0.4976420078264916,0.34150453163031314,0.12540815013709142,0.2540180043545754,0.22540468728717492,0.1401658142980774,0.2916509332374175,0.11461938925486842,0.18205956186117722,0.30761987913358796,0.23420599898282152,0.5543052628765761,0.2786706181661471,0.48084894029527536,0.3455771925752991,0.5467991012580223,0.4859471272504422,0.5785540965092408,0.6258313797796751,0.4145453606466433,0.4074662116834849,0.24753551001155866,0.23956910331996664,-0.10526253633420456,-0.058334973984902026,-0.05500778838310417,-0.0555867742738501,-0.08900688401439384,0.07325624632012163,-0.0037343712419220486,0.029132730058091916,-0.005629729163639447,-0.024553436828453328,0.037775690690963676,-0.03007961587368167
17
+ CellsCulturedfibroblasts_GTExTPM,-0.10742827911081797,0.4826790164854049,0.6912555667786319,0.5659859127942296,0.646970788554082,-0.0027895083267210127,0.5849187676942702,0.6848229468555097,0.05407750087589714,0.43479958388990503,0.6679949540956204,0.68268909652373,0.6961465003049867,0.6366554917548408,0.7079618550353243,1.0,0.6639633800589817,0.5212022670463197,0.4633412838751821,0.45251156259241343,0.4944707941865486,0.6893387073638869,0.5134875416242168,0.450954033062744,0.7508012674852078,0.3915275607141674,0.5416379669067662,0.5774332103868044,0.32080674456422864,0.5530510974332274,0.5333312629683511,0.7204731039877199,0.6145768956988504,0.5295948939936121,0.31173483987412454,0.22210071187732344,0.20103253461217335,0.3205034520341423,0.4770814024253554,0.14441053154113118,0.41403131139255994,0.5028373652186598,0.42179255624282175,0.6585240717119833,0.25269053136721636,0.4014583999761969,0.512509990743965,0.4227465731339257,0.39005751772058644,0.4695863671066503,0.49429413654672916,0.3605558745196757,0.3431737014334119,0.21724273791268317,0.21676217804382464,-0.14354165239062372,-0.08521380216547686,-0.05826446073038449,-0.06498439050858326,-0.11672065123278615,0.14465489243443955,-0.045544367951856964,0.14592127342095368,0.014516048401967472,0.007986355726096413,0.14375876138040838,-0.0743272369853234
18
+ EsophagusGastroesophagealJunction_GTExTPM,-0.1385775017353678,0.5498506626082662,0.7469453740285205,0.5810298336080627,0.6720267921157458,0.003703178496338783,0.9301910966849604,0.9868191938879064,0.09957438412628299,0.5856860232941212,0.8502897904421431,0.9534960714035107,0.8239350489628613,0.8914317890743171,0.5678357576737981,0.6639633800589817,1.0,0.8768832040964533,0.8517886507262222,0.6234631336001699,0.8379583660192381,0.8995449410939752,0.7635578623406398,0.5792881581068894,0.884654441289808,0.5912184091438034,0.7896892930781106,0.6548476608357456,0.6407530524505208,0.9088319841793471,0.8735793729774602,0.6685606058709123,0.8059532791092524,0.9031294217486521,0.5720165032380464,0.21784785089727757,0.19910526648930568,0.7334673576075457,0.8755868715166029,0.1558780780940336,0.8442127168330589,0.893001582058788,0.863130440732631,0.9705691891812818,0.25351746448973506,0.39978676572975813,0.8714363753451355,0.4280778522989229,0.4145905187012573,0.48004417738652794,0.4844881739120544,0.38327190881994516,0.34202816848975137,0.21058943600967575,0.2165741924368713,-0.10679990932299817,-0.07606490834608375,0.030893119443978722,0.01789656502453836,-0.04644879702074365,0.14691736452896975,-0.02690948192702681,0.08598619026726617,0.05596066481649326,0.09898190705892554,0.05792058767156021,-0.09370493876156111
19
+ BreastMammaryTissue_GTExTPM,-0.16593167625860172,0.6147999441151181,0.6346687544331094,0.6250832557136953,0.4106690947870216,0.001676605717855317,0.9612824476356556,0.8154108276646339,0.3541983429677279,0.6055632532554568,0.7950138841223432,0.8135499228719377,0.7418264685420959,0.8988797865262244,0.3369455305444299,0.5212022670463197,0.8768832040964533,1.0,0.9770661888814789,0.4747113216262026,0.9059297540190636,0.8464268471365443,0.8283944956864623,0.5333839137501873,0.7443821123174015,0.785465971474446,0.8301465675644581,0.6570075045097035,0.7739756368472971,0.9448392386821337,0.8994338042761515,0.5799380955512787,0.8913775953633716,0.9560723926441154,0.6808576454630918,0.38408275850617657,0.36886129566534276,0.8451328121243309,0.9822565552300044,0.3732965323306893,0.920283897770352,0.9661417730115649,0.9332916688495925,0.9344708637979953,0.389556840997238,0.43661557174928434,0.9928207287547407,0.4320529582673628,0.4523176872143692,0.4781086550392365,0.45773425366222403,0.4699258646078777,0.4436786755350233,0.37085156920909007,0.37590425114220755,-0.0613039952138727,-0.05116653719644187,-0.02535966823440147,-0.024760035029821655,-0.08826114736744158,0.15224746691430938,-0.030284208611943222,0.12949841766697615,0.06784433284023955,0.1320937390055641,0.09442802095073594,-0.09406171237384695
20
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21
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22
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23
+ Uterus_GTExTPM,-0.16424029013339353,0.5319809430319778,0.7125019391463274,0.5793834950835759,0.5727475589580617,-0.0020964003798834585,0.9214164283465814,0.8755015044755007,0.13663354025642638,0.598065943913846,0.8455636306093007,0.8941543559482237,0.8977178451738423,0.9095807019323909,0.5764842163861827,0.6893387073638869,0.8995449410939752,0.8464268471365443,0.806370954728926,0.6136550546052509,0.804123824866601,1.0,0.8324016128953127,0.5874802005685796,0.8579978651978161,0.6450626441136947,0.7844278200833298,0.6932012586155121,0.5884349484569543,0.8926259282727312,0.8500667401761293,0.7680309585826127,0.845296491751658,0.8532875928780564,0.536879710085718,0.22658335502969643,0.2089781605278602,0.6612732468852813,0.8193974351035881,0.18169340013661586,0.7640308469267674,0.8324934176662211,0.7814047146948854,0.9245753325226805,0.25181398028092195,0.3702810183115773,0.8214945192546119,0.42964087811359974,0.42364210230173205,0.44537480790289397,0.44416913158559623,0.3702595828904897,0.3342001294488579,0.21916323711449762,0.22229307773403148,-0.10645752836029651,-0.07709230869707394,-0.08145527813643852,-0.07417026768186637,-0.12381320995970005,0.18748553129649648,0.040935445500683,0.08454309785900425,-0.001324144416850854,0.04368648385714611,0.07410761548713214,-0.12452157537762892
24
+ Thyroid_GTExTPM,-0.16083687223154272,0.517928664628893,0.7257606662814717,0.6319780656472659,0.4218507005536641,-0.0001844682378847994,0.8103356429022702,0.7333364816429047,0.22839923936288337,0.6054497663093887,0.8088546223585007,0.7025633276389527,0.6884799033644237,0.7711106444885247,0.40175024357880945,0.5134875416242168,0.7635578623406398,0.8283944956864623,0.8372085455892155,0.48295519124661157,0.7913781686723783,0.8324016128953127,1.0,0.5278388091202774,0.7444510100096166,0.6354729080803286,0.8716823767459722,0.7843837956614029,0.6521414445252535,0.864818148613208,0.8058747094777852,0.6857022153482442,0.7093192443495304,0.8025192623299775,0.5960024046465479,0.27187141629600575,0.2640851283865362,0.6419211879653642,0.8132089519108354,0.2542588894480971,0.7312328982569214,0.7779880273536101,0.7334199660631959,0.808797564679797,0.2932585404317667,0.38055381205998307,0.788382174634377,0.5250981560240735,0.48355617369741816,0.45037132024894677,0.47295751812714915,0.39305604907671204,0.34935098327068403,0.27747481850275146,0.2775110292957319,-0.08983560358190885,-0.06356598302995418,-0.022960011790057196,-0.018851404426949065,-0.059708294126056424,0.15986747788823602,0.041511906848050575,0.18920131842502047,0.020012666010919136,0.07646757825380572,0.14878656215695324,-0.10564445176225505
25
+ Testis_GTExTPM,-0.08804655417181231,0.6577599303237385,0.5614077930445457,0.5850122226470582,0.4865929070278956,0.007684913248943218,0.5413520919346398,0.5911800946194443,0.34431535661182483,0.3966772653470632,0.7304871158087713,0.6684772304537155,0.5903910546543816,0.5938874646240113,0.45238766387752233,0.450954033062744,0.5792881581068894,0.5333839137501873,0.47387786006251387,0.5361324678363346,0.45829263565654843,0.5874802005685796,0.5278388091202774,1.0,0.6449866060612174,0.602523399909886,0.5984023949583237,0.6861510471084147,0.35166442253411634,0.5413632402908898,0.6673968924108985,0.5525972715316048,0.5798101129204221,0.5075923655736833,0.33234603044075134,0.46164229869757306,0.4555022583812557,0.3113072132494408,0.4423925495789888,0.4145211998827147,0.3771583825933973,0.4926749757068638,0.39360012784713083,0.5636191588881769,0.480030004314955,0.5616670307216802,0.5083939053810136,0.6221528614932663,0.6322971750696842,0.6061638995716349,0.6114100537893176,0.5808698383167374,0.5445062387708844,0.47091694311991344,0.4631417653083834,-0.04783509349154995,-0.04063132348933121,-0.030908448882536053,-0.10575235472594194,-0.10522497854662768,0.023161567534804896,0.026355837404325122,0.10209018041561549,-0.05431620076313071,-0.05173197366922913,0.06051878867782455,-0.07236473250322212
26
+ Stomach_GTExTPM,-0.054875683998299125,0.649620120735805,0.9124723627493432,0.7352249701737116,0.8431094045148161,0.004926419237620743,0.8121830601241095,0.8837416025814884,0.11881767050512805,0.5922204687904443,0.9063221245346962,0.9105373040221263,0.7678681345631712,0.7675488763292626,0.806925145147491,0.7508012674852078,0.884654441289808,0.7443821123174015,0.6962211511224042,0.6432152326458642,0.6841179166513548,0.8579978651978161,0.7444510100096166,0.6449866060612174,1.0,0.5721327434139474,0.7654603070705872,0.7631231595174841,0.5002411871419156,0.7823783923495657,0.7786581487072955,0.8316981243688065,0.7630437130398925,0.7493034175347054,0.4743299462818728,0.30087791528514785,0.27725651016928027,0.5319616462638848,0.7066181868987516,0.19509708302551174,0.6078036104231925,0.7201523647343007,0.6574075357510994,0.881781142651552,0.32734004142752243,0.5103903605707936,0.73530124315738,0.597728130687451,0.5520478911259242,0.6120750812381328,0.6428652318689583,0.48422393556530363,0.4491716440138576,0.2946664754151363,0.29213659659458996,-0.12191773685267027,-0.07585064539856816,-0.03735769769913217,-0.06424473191385208,-0.059693616854041356,0.09562781572083326,-0.008655363793121887,0.053480459972829054,0.04384403872837533,0.0462266516560438,0.04425691822837657,-0.09128544532493807
27
+ Spleen_GTExTPM,-0.1713355692070839,0.8395853365056998,0.5255079088485728,0.7696053132063597,0.3340270177615383,-0.0017504940394389437,0.6850433367409299,0.5536653737668884,0.7234229528930027,0.40540330382643436,0.6716817106923838,0.6248409888243872,0.6255008684472504,0.7422642680780115,0.31069744467904126,0.3915275607141674,0.5912184091438034,0.785465971474446,0.7170433044324289,0.3761158962737688,0.6171004374109894,0.6450626441136947,0.6354729080803286,0.602523399909886,0.5721327434139474,1.0,0.5904370105581147,0.6330144635281671,0.5574876805678555,0.6378726563391431,0.6703574232214358,0.4439315036325615,0.7999870482434774,0.6442987834085437,0.48945684355622004,0.7750125863163159,0.7640319367397153,0.5726813692136927,0.7029738390088168,0.7750398672035645,0.5835628179908096,0.6992910977683218,0.585423623895497,0.6670346737364258,0.7642652591897393,0.7380659702193513,0.7912135562037524,0.6024828931907461,0.6785191267425414,0.7197883934439017,0.6758758907444874,0.7893140210987291,0.7810802461100971,0.7656800421884911,0.7626676958115907,-0.016597160665668836,-0.02783049312100639,-0.0015903543067782833,-0.013905221455821756,-0.10204747078976309,0.11717373979908231,-0.006719106443116551,0.28916344269926614,0.026581050777981705,0.052075846842586274,0.2315195349342172,-0.09389213918668679
28
+ MinorSalivaryGland_GTExTPM,-0.14992321574739467,0.4869405219570486,0.7282452771505579,0.5865287018219846,0.39551416054888855,-0.0026493529275747724,0.8317688603923651,0.749687933139338,0.1706630944441941,0.7250894047645764,0.8993918035518886,0.7597659119216345,0.6836154062404345,0.7712612995188244,0.39997389277496886,0.5416379669067662,0.7896892930781106,0.8301465675644581,0.840391408820044,0.5239877954663469,0.8381526985539669,0.7844278200833298,0.8716823767459722,0.5984023949583237,0.7654603070705872,0.5904370105581147,1.0,0.8757097240610081,0.7248454477938786,0.8580498110717594,0.8684072987395948,0.7680105726555785,0.7413869267072346,0.844024069598426,0.6881174350386972,0.20579125947111687,0.20106475490001957,0.681365661801184,0.7820107112743421,0.19170625803502908,0.755169131392445,0.814518737223556,0.7692170799522431,0.8183474611664078,0.22058131689317842,0.3101013209981123,0.7820346694155316,0.5311669659369208,0.46101087065191476,0.39699351927179044,0.4356687870469699,0.33656542456762883,0.28593011082879416,0.21518472466635002,0.21201820686789702,-0.09379436914395453,-0.06018297105242771,-0.043113776685251216,-0.05021235169909097,-0.0836380371710947,0.15786815659686862,0.053274719419475494,0.15930334693230158,0.035763549167807065,0.07024341881162338,0.1234261604456128,-0.13156971361505623
29
+ SmallIntestineTerminalIleum_GTExTPM,-0.15249833673956517,0.6441265394417678,0.7975987253443769,0.7427294599499668,0.5002487313134948,-0.0051833763874048954,0.6502774158078486,0.6490768170541015,0.3301254547267825,0.5619486175013301,0.9029983655994522,0.6950499659361429,0.6528371873687955,0.66699411217996,0.5496467822830712,0.5774332103868044,0.6548476608357456,0.6570075045097035,0.6380701562882912,0.5134637020426231,0.6032376142746144,0.6932012586155121,0.7843837956614029,0.6861510471084147,0.7631231595174841,0.6330144635281671,0.8757097240610081,1.0,0.4933583933503158,0.6492218755611148,0.7178449403774589,0.8007462418360561,0.674480942369449,0.6190582602307935,0.48022182071000186,0.41855993456701723,0.4144266330732498,0.42044278562343085,0.5673837532857648,0.38145178846665173,0.4891758449065773,0.6053212253543774,0.49851761641930475,0.6690417034302623,0.4328044939875702,0.5264915682289263,0.6146499685720187,0.7263217956683339,0.6566426625589558,0.5992959609366033,0.6488692147395059,0.5398447337982638,0.49785524998661296,0.4340706467876221,0.4248317826084541,-0.0942730247348911,-0.06885240140364564,-0.048336521437346854,-0.0676129893923711,-0.0667932189083759,0.124270450933747,0.04013088153036462,0.24744396229235913,0.043769577686033304,0.037614405121110764,0.19891509915813113,-0.10716557313301688
30
+ SkinNotSunExposedSuprapubic_GTExTPM,-0.20174064344813483,0.39988855682084445,0.3940281168481481,0.40028287226059006,0.2016619527670862,-0.001085769436972911,0.718561576793404,0.6007542995246582,0.2668136404517619,0.8820226248204648,0.5827320569238326,0.5377386633409289,0.5663582463990093,0.7110384352677133,0.10957526455096012,0.32080674456422864,0.6407530524505208,0.7739756368472971,0.7689357809609312,0.29747084367638754,0.9342071764109028,0.5884349484569543,0.6521414445252535,0.35166442253411634,0.5002411871419156,0.5574876805678555,0.7248454477938786,0.4933583933503158,1.0,0.7482106126658183,0.6916277114882663,0.44671692891376086,0.6532467208356318,0.7399786172886408,0.9838456015438097,0.2543772950310717,0.24782185916518107,0.6829729309702947,0.7647256262570912,0.2816759978738614,0.7539889416275025,0.7461407555989961,0.7374922961953277,0.6853595994042264,0.2692097847833781,0.28051316425982903,0.7461428121201858,0.2589726793035785,0.2793057997767541,0.2938462600800432,0.27516040327968744,0.30497735920859126,0.2795824205355121,0.2505106764442977,0.25721005029663885,0.03700688568905969,0.02470757865094783,-0.008496576296060637,0.04575152087029924,-0.08427150556144561,0.1550922669259533,0.03163645461694689,0.2095168953347561,0.047989868383743535,0.09272701530971689,0.1643445012924295,-0.15590264511171592
31
+ Prostate_GTExTPM,-0.15971330691164004,0.464455973470687,0.6316876857122377,0.49843649512519145,0.4329138181243132,0.003128655468682689,0.9648183602689243,0.8554365649552637,0.14149887427030208,0.6422909067388823,0.7995704782746219,0.8361050455619786,0.7638812205778801,0.8811703081156143,0.3663722748250756,0.5530510974332274,0.9088319841793471,0.9448392386821337,0.951598457034027,0.5299310232451769,0.916475715029665,0.8926259282727312,0.864818148613208,0.5413632402908898,0.7823783923495657,0.6378726563391431,0.8580498110717594,0.6492218755611148,0.7482106126658183,1.0,0.9289034974403422,0.6316106938405364,0.8168307071419814,0.9724227791924598,0.6656946060488839,0.16541920719815176,0.1507280581582202,0.8540499207913691,0.9482720831288262,0.14547900053474433,0.9158584880781472,0.9433959592685336,0.9401269433922812,0.9479007555423186,0.18387523415000034,0.2721369173721677,0.9229989555547335,0.35611482338979134,0.35196376794552225,0.3460250687464678,0.3374295507120713,0.2931087449124349,0.2521459289823267,0.15543384313786812,0.16183075331238947,-0.08929659130933697,-0.06450705018603944,-0.05085013953275402,-0.05511609236715387,-0.0650322825710829,0.14690571992369933,-0.011011805551374423,0.043286616839148966,0.03672692335675651,0.0933362744044832,0.025180507754492317,-0.10987554986087067
32
+ Pituitary_GTExTPM,-0.13996872178169084,0.5504631869466922,0.659682504616009,0.5639224551428157,0.4394088732085039,0.0024037884401483123,0.9225842342403344,0.8247379702454084,0.22847251829085127,0.6044589600147062,0.8331310391463199,0.8391148312230792,0.7527788667001226,0.8558520575508605,0.3975948845237271,0.5333312629683511,0.8735793729774602,0.8994338042761515,0.8899529242314235,0.5111639093629409,0.8471257694811518,0.8500667401761293,0.8058747094777852,0.6673968924108985,0.7786581487072955,0.6703574232214358,0.8684072987395948,0.7178449403774589,0.6916277114882663,0.9289034974403422,1.0,0.6557123470724866,0.8216549361230883,0.9285681588367524,0.6180683239378377,0.26658775181052813,0.2563427128477332,0.7735168398312282,0.8685515187833186,0.23927462226474638,0.8369148201566782,0.8962207566323369,0.8636787015440348,0.9034860613754107,0.28441112246287953,0.3773327090443323,0.872676129063023,0.5388112375578736,0.5383770595598389,0.46089442620009163,0.4572625942886272,0.40321803182832655,0.36338199570350976,0.264268772471263,0.2662412670962229,-0.10250178477555254,-0.07282892789142698,-0.03416583685056352,-0.06662559472878313,-0.08597210504758702,0.15187974766559967,0.031615052549557425,0.07422969014117821,0.0004276500761787088,0.044586939444315556,0.05216868524648835,-0.16165365475509977
33
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34
+ Ovary_GTExTPM,-0.11241261240708758,0.7226303860132006,0.6514354357921354,0.6974676739413657,0.4563109013759334,0.0019543344883450474,0.8969595269299722,0.763355392775354,0.4415544061133152,0.5586908873231085,0.7968146974061747,0.8057139103385413,0.8208709535968942,0.901200081167771,0.4976420078264916,0.6145768956988504,0.8059532791092524,0.8913775953633716,0.8280629664335153,0.4687961016954783,0.7897035680087581,0.845296491751658,0.7093192443495304,0.5798101129204221,0.7630437130398925,0.7999870482434774,0.7413869267072346,0.674480942369449,0.6532467208356318,0.8168307071419814,0.8216549361230883,0.7216975242622341,1.0,0.8385678426894109,0.5819151766978512,0.5183743980020508,0.49747617262390004,0.6514589350505002,0.8294854554912462,0.49342885456711044,0.7334458475824015,0.8273510013393857,0.755994481486556,0.8768207753769793,0.520100095386357,0.5637947938890684,0.8800325723125815,0.5322629455730741,0.5663949168322737,0.5942296175324698,0.5713070957044848,0.5896563318040503,0.5802021354639015,0.5027782341561643,0.5031438810495757,-0.0710889650460137,-0.05325706588767643,-0.10651449569680678,-0.08823459872664094,-0.16933377951495485,0.13309337594137596,-0.03083848122132442,0.17523896367097333,0.0337430049321105,0.06536240529117639,0.13541694366120102,-0.1019784368207676
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36
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37
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38
+ BrainPutamenbasalganglia_GTExTPM,-0.11539630337547922,0.8884507011914627,0.3610675693984115,0.7662405117671736,0.2809701579688133,-0.0012398320517922696,0.2208760618379533,0.21616717412688521,0.9104378907501288,0.10940452424495371,0.368745993285731,0.26488373893042977,0.34021920899530667,0.4016534641671171,0.22540468728717492,0.20103253461217335,0.19910526648930568,0.36886129566534276,0.26386121188929806,0.14286292686724023,0.19545497965103625,0.2089781605278602,0.2640851283865362,0.4555022583812557,0.27725651016928027,0.7640319367397153,0.20106475490001957,0.4144266330732498,0.24782185916518107,0.1507280581582202,0.2563427128477332,0.19680366624652798,0.49747617262390004,0.16612793303191395,0.21616058092214724,0.9912338712279372,1.0,0.05001987477714301,0.26312816008127526,0.9685576402625566,0.12983279460832253,0.2624548405519415,0.10301499818111248,0.2392589526553575,0.9887088828394421,0.9293642536388033,0.3943789495698542,0.7044992983234142,0.7954874382438654,0.8649134769906586,0.8217811169487113,0.9585105130192126,0.9649750054683384,0.9963914060560135,0.9989885169462188,-0.0018774928957902188,-0.011103869365745969,0.047325181939408226,0.02423919150717176,-0.07298302643966556,0.023465977187582924,-0.034791518299265294,0.386042543027982,0.04375849858508806,0.012059646231666337,0.295359283892044,-0.043816241614978844
39
+ WholeBlood_GTExTPM,-0.12972667662314447,0.28148371911372955,0.3944554584621044,0.29754271833065765,0.19971816027486167,0.0029789945668134148,0.8332833279981576,0.6500032790370007,0.10392488515035457,0.49190595066442133,0.5548178207385083,0.6316593808158922,0.5192663989955675,0.698458318772462,0.1401658142980774,0.3205034520341423,0.7334673576075457,0.8451328121243309,0.9002914676340918,0.3199155526195224,0.8087199539685325,0.6612732468852813,0.6419211879653642,0.3113072132494408,0.5319616462638848,0.5726813692136927,0.681365661801184,0.42044278562343085,0.6829729309702947,0.8540499207913691,0.7735168398312282,0.33217286795029777,0.6514589350505002,0.8767957235871957,0.5824687547979122,0.06345434680167816,0.05001987477714301,1.0,0.8839040605361621,0.07074747198321758,0.8931430079071397,0.8799468926446637,0.916576405769417,0.8000235203365058,0.06063313510883257,0.08894872957641532,0.8447579131095712,0.12772632841189255,0.13665737352905633,0.13733229320356893,0.11420097537329264,0.12937797817263083,0.1065104094542351,0.04370173974602906,0.05330769396790161,-0.0159014693103019,-0.01235340250934872,-0.00443325512470401,-0.003000397650180166,-0.04141465457833617,0.12010941244246401,-0.04626488783238826,-0.0023411270263675146,0.06576642290458692,0.14361999840498257,-0.010530782104630735,-0.02730503890900175
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+ AdiposeVisceralOmentum_GTExTPM,-0.15036951710353955,0.5172808582893265,0.5896658757701525,0.5377433452459394,0.39093365724039586,0.0037358157816482097,0.9519145177171942,0.8128899734613525,0.2585613902672338,0.5682684109705596,0.7199651039442172,0.7753362183807977,0.701935652256858,0.8681409664990509,0.2916509332374175,0.4770814024253554,0.8755868715166029,0.9822565552300044,0.9809860418746017,0.4264077626421404,0.9054352839837095,0.8193974351035881,0.8132089519108354,0.4423925495789888,0.7066181868987516,0.7029738390088168,0.7820107112743421,0.5673837532857648,0.7647256262570912,0.9482720831288262,0.8685515187833186,0.5007411822726734,0.8294854554912462,0.9560573185718582,0.6615356215271524,0.2783687076632802,0.26312816008127526,0.8839040605361621,1.0,0.2678639367868893,0.9522161535728223,0.9673966024159355,0.960647965106972,0.9294987407176428,0.28971842636581346,0.3456564782837676,0.9810486852972,0.3302142591891867,0.34759506516307054,0.3905279756173517,0.36908012843745475,0.3687552646657921,0.3420119324445755,0.2634178215023499,0.27229542590709976,-0.0579161615666458,-0.0481044941473662,-0.006626269301686593,-0.002363354069788763,-0.06277900980416903,0.14466161317080983,-0.040581899517345414,0.09278257022360077,0.07481009473690041,0.14941884622057391,0.06190777061044507,-0.07452901603261664
41
+ AdrenalGland_GTExTPM,-0.12171116886435329,0.8321302760274959,0.2657325657321138,0.706474479074866,0.14552665535085613,-0.0019862525244748633,0.20857372914050962,0.1658397773166515,0.9118745557916814,0.11034959003928839,0.31876562263838965,0.20511351873219896,0.3200193326150396,0.39749769180078925,0.11461938925486842,0.14441053154113118,0.1558780780940336,0.3732965323306893,0.2792656134535718,0.08789614195554335,0.21224811263895527,0.18169340013661586,0.2542588894480971,0.4145211998827147,0.19509708302551174,0.7750398672035645,0.19170625803502908,0.38145178846665173,0.2816759978738614,0.14547900053474433,0.23927462226474638,0.14589839199700463,0.49342885456711044,0.1629924636649605,0.24448305796730713,0.9756547681536478,0.9685576402625566,0.07074747198321758,0.2678639367868893,1.0,0.1420122577429117,0.25595607690156513,0.10381743954569973,0.20694481893692418,0.9581659448302107,0.8603356988961087,0.39333754076099725,0.6063121670641343,0.7141557174547383,0.7669731028374519,0.7211341848840573,0.8991937475947775,0.9218412467292333,0.9714665218777411,0.964188019462472,0.01706122535320115,-0.00012752924154574015,0.044085222315014744,0.03092538934665417,-0.06956452003636,0.019637446817336368,-0.04663642388029588,0.4111341097840097,0.020950238428829104,0.008467354627709834,0.31106841885351727,-0.04600352751155281
42
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43
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45
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+ ExomiserScore_DecreasedBP_MultiHPOTerms,-0.2525127477502382,0.035376410175098974,0.02823576833337578,0.02306306016276932,0.03358101836181317,0.09011230963045988,0.0919013637210546,0.0892810034883204,0.055702528710720615,0.04051357466677149,0.03798890278940287,0.0660382831433391,0.011878940367545872,0.056216716830622716,-0.024553436828453328,0.007986355726096413,0.09898190705892554,0.1320937390055641,0.13618111487801965,0.05960255098289392,0.09606906652877599,0.04368648385714611,0.07646757825380572,-0.05173197366922913,0.0462266516560438,0.052075846842586274,0.07024341881162338,0.037614405121110764,0.09272701530971689,0.0933362744044832,0.044586939444315556,-0.0014886982109785605,0.06536240529117639,0.10711613064787401,0.07775462708356637,0.013428389192492889,0.012059646231666337,0.14361999840498257,0.14941884622057391,0.008467354627709834,0.1522229097832357,0.13618738355864685,0.1392292361866262,0.0909085909962216,0.019535463441045123,0.010635960168502673,0.14410669413791616,-0.016419997950137936,-0.028634994132741894,0.011860055860317744,0.0018619021872411951,0.01947902866137274,0.005986564048524333,-8.386964496033604e-05,0.011918520008298643,-0.07288482206749824,-0.07737335108637101,-0.07113053107662395,-0.022315388662264974,-0.14276630728799522,0.08713727298291693,-0.05305077713524289,0.0579392285346064,0.8702371505106647,1.0,0.0740257602135673,-0.05440967386700147
67
+ SDI_essentiality,-0.26282883261197076,0.24214192545664703,0.09764786976417995,0.217802060289504,0.005953282832086753,0.013750888637047069,0.03206724073300954,0.09846606148686456,0.2451953323337446,0.13413582297738494,0.1170860534676657,0.04196029814938517,0.17700197618338462,0.15536822725598556,0.037775690690963676,0.14375876138040838,0.05792058767156021,0.09442802095073594,0.07835851220570009,0.009277492918935698,0.11972884119892994,0.07410761548713214,0.14878656215695324,0.06051878867782455,0.04425691822837657,0.2315195349342172,0.1234261604456128,0.19891509915813113,0.1643445012924295,0.025180507754492317,0.05216868524648835,0.1136598854585107,0.13541694366120102,0.008793701977811366,0.17525956771714327,0.2951397249281104,0.295359283892044,-0.010530782104630735,0.06190777061044507,0.31106841885351727,0.0227771944222407,0.03449160158808172,-0.03332634821470157,0.0489362931237904,0.31673050650413276,0.30851149955223284,0.07759654424051962,0.27291778645761355,0.29437805507717346,0.2898574277000456,0.29098337242469297,0.30245124875466994,0.28715556048817253,0.30965485635101647,0.30433553861104773,-0.012822343263477415,-0.02367466703802575,0.020836755598466882,0.06442441658114595,-0.07774014304082895,0.3894084072773811,0.27724106244397995,0.9659377655260291,0.08624149131541736,0.0740257602135673,1.0,-0.35041911319607805
68
+ RVIS_genic_intolerance,0.2834231761093585,-0.07586671732382692,-0.06967034955300927,-0.07588312756123261,-0.02358230128177764,0.08775119930089342,-0.10745108668750433,-0.09302542938828162,-0.0285384233525611,-0.16610762651676125,-0.12592339016223636,-0.11362824613153776,-0.11605685033607466,-0.10552052486987552,-0.03007961587368167,-0.0743272369853234,-0.09370493876156111,-0.09406171237384695,-0.08563069090896464,-0.04737037136196334,-0.12873687208068196,-0.12452157537762892,-0.10564445176225505,-0.07236473250322212,-0.09128544532493807,-0.09389213918668679,-0.13156971361505623,-0.10716557313301688,-0.15590264511171592,-0.10987554986087067,-0.16165365475509977,-0.12107751724083257,-0.1019784368207676,-0.09161254174208132,-0.17280752423461423,-0.04240438321244974,-0.043816241614978844,-0.02730503890900175,-0.07452901603261664,-0.04600352751155281,-0.06584205138787197,-0.07664807738609285,-0.07250488632218284,-0.09038580472119198,-0.04750526976430505,-0.07146635303856769,-0.08001576676380236,-0.14657986061970216,-0.15975449091409455,-0.09749197439733254,-0.09858642845984025,-0.07300766445364694,-0.0652370756933915,-0.0537172300596231,-0.04704109083259047,0.2464499453105721,0.21430399043274906,0.012116270274776983,-0.028589397414633025,0.008176815182270399,-0.5091684448844462,-0.4553355457533441,-0.3071951082490563,0.00043920964649904975,-0.05440967386700147,-0.35041911319607805,1.0
example/machine_learning/eda/output/feature_missingness.png ADDED

Git LFS Details

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example/machine_learning/multiclass/input/cleaned_training_data.csv ADDED
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1
+ Gene,label_encoded,BrainSpinalcordcervicalc1_GTExTPM,KidneyMedulla_GTExTPM,HeartLeftVentricle_GTExTPM,FallopianTube_GTExTPM,Liver_GTExTPM,EsophagusMucosa_GTExTPM,CellsEBVtransformedlymphocytes_GTExTPM,CellsCulturedfibroblasts_GTExTPM,MuscleSkeletal_GTExTPM,Testis_GTExTPM,Spleen_GTExTPM,Pituitary_GTExTPM,WholeBlood_GTExTPM,AdrenalGland_GTExTPM,GDI_Phred,Effect_SBP_Median,Effect_PP_Median,Effect_DBP_Median,HIPred_haploinsufficiency,pLI_exac,SDI_Drug_Probability,ExomiserScore_IncreasedBP_MultiHPOTerms,ExomiserScore_DecreasedBP_MultiHPOTerms,RVIS_genic_intolerance
2
+ GGNBP1,2.0,0.0,0.0223356,0.0,0.0,0.0,0.0,0.378641,0.0,0.0,6.04134,0.167554,0.0569535,0.0193832,0.0175397,0.80177,-0.056,-0.0447,-0.0012,0.26428095921428585,0.11889101308697782,0.071954774,0.0,0.0,0.09271428571428572
3
+ BIRC8,2.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,19.1258,0.0,0.0,0.0,0.0,2.84901,0.01175,0.0163,0.00585,0.111908376,6.54e-07,0.069192978,0.500029731,0.500116999,1.86
4
+ OR10J3,2.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.113672,0.0,0.0,0.0,0.0,0.0,0.0,6.07198,-0.0007,0.0096,-0.002,0.123297259,0.001039428,0.051636578,0.500000007,0.500000131,0.31
5
+ ZNF286B,2.0,0.706788,0.904861,0.145201,1.28137,0.134173,0.46868,0.589235,0.93444,0.190387,0.911304,0.823156,1.07495,0.076501,0.478589,17.27843,-0.0058,-0.0152,-0.0011,0.186891869,0.003746029,0.053038083,0.0,0.0,0.6665714285714286
6
+ COLCA1,2.0,0.317533,7.07442,0.141394,10.8175,0.338163,2.69537,0.50074,0.0330336,0.188529,2.30677,0.557303,0.475412,0.0192248,0.348803,1.19247,-0.00985,-0.01015,-0.0002,0.179693475,0.02661554,0.070124777,0.5037741268961904,0.5077425982571432,0.11942857142857144
7
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8
+ OFCC1,2.0,0.0,0.0,0.0,0.0,0.0,0.0,0.113909,0.0,0.0,0.814621,0.0,0.0,0.0,0.0,8.27431,-0.0009,-0.00115,0.001,0.17751041625714292,0.045806174188037105,0.07888248544285714,0.0,0.0,0.7651428571428569
9
+ UBBP4,2.0,8.92305,1.45881,1.15326,1.95166,2.09571,1.20858,2.85659,2.06883,2.11387,105.313,2.32975,3.5156,3.5196,2.84593,11.07485,-0.02,-0.00415,-0.0169,0.18980889,0.061068295,0.10990634345714291,0.5038016893999999,0.5094032195000001,0.16785714285714276
10
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11
+ C9orf163,2.0,0.265642,0.953132,0.0592585,0.656346,0.51919,0.574811,0.288181,0.185427,0.132313,5.93235,0.596798,3.76257,0.0546352,0.358823,5.711080428571427,0.0327,0.0126,-0.0358,0.153042644,0.055046603,0.10972966648571433,0.5025107772523808,0.5071718620999999,0.15
12
+ KIR3DX1,2.0,0.1231,0.0146914,0.00807139,0.0436244,0.0314596,0.00791488,0.978169,0.0,0.0103261,0.371277,0.603065,0.0218519,0.88981,0.0715515,3.19122,-0.0069,-0.003,-0.00195,0.2473345649142859,0.06640149949861712,0.09249230474285712,0.5048631861714288,0.5160495465000002,-0.18400000000000002
13
+ TMEM78,2.0,0.0223093,0.0251949,0.0,0.0,0.0,0.0,0.0,0.0,0.0192901,0.130451,0.0,0.0,0.0,0.0,6.68075,0.0016,0.0003,-0.0086,0.2193618688428573,0.0392697410237383,0.0899480738142857,0.5041828829114288,0.5102594661142859,0.36485714285714294
14
+ FAM182B,2.0,1.04978,0.270178,0.126044,1.38335,0.0563413,0.484774,0.0912101,0.110042,0.124129,11.3845,0.22025,2.63536,0.0321604,0.299508,0.85119,0.0871,0.02575,0.0495,0.3319479086142857,0.1352797556844286,0.10984630761428575,0.5031842640428573,0.5150784639142858,-0.2792857142857142
15
+ LOH12CR2,2.0,8.52736,2.75394,0.965988,3.12986,0.661395,0.538088,0.673345,1.5539,0.623049,1.77758,1.08924,4.59853,0.359423,1.92351,3.72508,0.10925,0.06805,0.046,0.19787774848571435,0.08962014227699193,0.1096773490714286,0.5062937607809522,0.5219062610714285,-0.009428571428571446
16
+ PAXIP1-AS2,2.0,1.4836,2.31304,0.751052,6.80789,1.77775,1.8298,5.85594,4.80882,0.804918,3.20924,4.57562,5.45897,0.691576,3.6798,0.46207,0.0006849999999999959,0.0004985714285714372,0.0004214285714285657,0.146139458,0.09168088,0.1098255971285715,0.504192014,0.5109652299571427,-0.08542857142857142
17
+ RP11-176H8.1,2.0,3.73676,1.954,1.08471,4.22246,0.937063,2.10794,1.85989,1.6977,2.59195,6.02111,1.96694,4.15237,0.157624,1.52735,0.56301,0.0055800000000000086,-0.0005885714285714258,0.031148571428571442,0.111908376,0.172135497,0.10523885870000002,0.5110353229571429,0.5129082927857143,-0.038714285714285715
18
+ RP11-113D6.10,2.0,0.0,0.00561218,0.0,0.0,0.0182137,0.0,0.0160106,0.0,0.0,16.8851,0.0,0.0,0.0,0.0,8.08594,0.0035335714285714263,0.0024971428571428406,0.000357142857142883,0.138881207,0.34890553,0.07811683878571432,0.5038823389142857,0.5119868133285717,0.9812857142857137
19
+ PTCHD3,2.0,0.0,0.0,0.0,0.0958237,0.0,0.040461,0.0,0.0,0.0,3.8955,0.161329,0.0,0.0,0.0,15.99359,-0.0031,-0.0001,0.001,0.123297259,6.38e-11,0.070722998,0.0,0.0,3.16
20
+ BRI3BP,2.0,13.1499,5.72383,1.39313,3.40762,4.37406,12.6571,49.4382,8.01932,0.871298,4.26135,8.82672,5.83737,2.23634,2.87851,0.78365,-0.0005,-0.0009,0.00415,0.42872709,0.125132505,0.080466105,0.0,0.0,-0.36
21
+ SACM1L,2.0,20.1971,18.5736,6.78633,28.7388,10.4166,18.457,25.9219,31.5161,6.84177,17.804,29.2248,31.6323,8.862,24.0012,0.94154,-0.0123,-0.0037,-0.0053,0.693781972,0.721901743,0.112123056,0.500007495,0.500518989,-0.42
22
+ LDHB,2.0,383.889,786.406,873.758,364.696,11.9977,140.54,1127.89,738.488,128.27,143.991,194.832,186.419,74.2765,409.089,1.52454,0.01865,0.0086,0.0046,0.561718941,2.03e-05,0.120383642,0.50414018,0.520848798,-0.25
23
+ METTL13,2.0,8.96755,12.7995,6.62912,20.4469,7.08001,14.7212,34.5619,34.8662,11.0235,32.1318,19.6314,10.8081,5.24399,19.354,11.02115,0.0079,-0.0102,0.0137,0.49568212,0.00133198,0.11195514062857145,0.0,0.0,-0.66
24
+ PRNT,2.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,15.6821,0.0,0.0,0.0,0.0,0.25941,-0.00045,0.0023499999999999,-0.00475,0.179693475,0.105498859,0.052540639,0.5035531202857143,0.5091649601714284,0.6218571428571429
25
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26
+ MDS2,2.0,0.045306,0.276583,0.00875534,0.0948098,0.0339932,0.0328367,0.452416,0.0,0.0169622,0.493323,0.943516,0.129829,0.328155,0.0374725,10.49529,0.017,0.0161,0.0042,0.179693475,0.042965573,0.053038083,0.5061541525285715,0.5126447794428574,0.2835714285714286
27
+ TMEM105,2.0,0.0672839,0.0340725,0.0,0.0556298,1.43849,0.464685,0.0144868,0.0110185,0.16265,0.300096,0.27837,0.0583301,0.0326174,0.274119,3.20049,0.0012,0.0034,0.0001,0.123297259,0.011619609,0.052631346,0.5045020677,0.5133154198857145,0.73
28
+ GABARAPL3,2.0,0.0208279,0.0367341,0.0183604,0.0,0.016121,0.0,0.0,0.0,0.036596,0.840847,0.0,0.0978896,0.0,0.0267056,4.50403,-0.0032,0.0001,-0.0033,0.171224996,0.019405965,0.092183797,0.5034339216714286,0.5062478841142857,0.04928571428571427
29
+ EIF2S3L,2.0,0.121887,0.113477,0.0778795,0.318078,0.0799235,0.228861,0.844305,0.538222,0.165994,2.64307,0.182784,0.14607,0.151374,0.203026,8.90959,-0.0036499999999999,-0.01165,0.0034,0.375431418,0.147907105,0.1095985321428572,0.5033333921628574,0.5062380215000001,0.10299999999999997
30
+ RFPL3S,2.0,1.06857,1.24233,0.159532,1.15532,0.388028,0.429532,0.946083,0.245911,0.235224,64.7789,2.34467,2.62571,0.395956,0.465675,0.92393,0.0212,0.003,0.003,0.146139458,0.415441822,0.10543452832857148,0.5041639665714288,0.5115812895142858,-0.016571428571428584
31
+ TLX1NB,2.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.67001,3.23103,0.0,0.0,0.0,5.67049,0.0265,-0.0002,0.0103,0.179693475,0.019335617,0.08053818342857141,0.5039857997142857,0.5116755309428573,0.6974285714285716
32
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+ CHRNA3,1.0,0.224993,0.110417,0.0670321,0.0795115,0.00571161,0.130565,0.284571,0.0464428,0.0946701,2.15908,0.139479,1.58278,0.00586167,0.38753,2.3362,0.00745,0.0024999999999999,0.0049,0.390099078,0.007061638,0.257892317,0.500274737,0.807572853,-1.11
87
+ CHRNB4,1.0,0.0,0.086073,0.0,0.0219351,0.00688639,0.501678,0.00853215,0.0,0.0,11.1055,0.163756,0.405228,0.0,0.303716,4.7721,0.0129,-0.00195,0.0208,0.282110006,0.018626609,0.203626675,0.500247207,0.518387722,0.73
88
+ PDE8A,1.0,39.099,22.986,8.45232,30.8388,20.1172,10.8596,28.6723,24.4503,7.12677,30.097,21.302,24.7527,2.68188,34.6952,3.78359,0.00385,0.003,-0.00115,0.650558949,0.713477057,0.071959201,0.0,0.0,-0.2
89
+ GRIN2A,1.0,0.984664,0.20105,0.2898,0.398573,0.0152228,0.117538,0.0567163,0.0095719,0.0223246,1.43504,0.00721744,0.116383,0.00301837,0.0244027,2.38246,-0.0041,-0.002,-0.0003,0.843373597,0.998044808,0.282267688,0.500525762,0.501739645,-1.46
90
+ NDUFB10,1.0,117.224,166.033,333.586,171.178,94.6416,124.586,138.357,194.183,429.817,166.737,126.654,112.025,68.0722,127.586,0.70328,0.0131,-0.00205,0.0079,0.239817828,0.046629914,0.06607077,0.500013105,0.500383337,-0.47
91
+ NDUFAB1,1.0,40.1868,63.4478,158.701,59.9988,43.7203,53.8709,104.033,59.5629,106.533,56.9655,46.3289,69.4162,9.29395,65.8298,0.35281,-0.0038,-0.0198,0.0032,0.550109684,0.755255332,0.127027129,0.500078764,0.500488883,-0.21
92
+ VKORC1,1.0,54.9631,96.1636,32.5123,148.864,244.214,52.488,97.3414,306.698,17.7855,97.4639,75.8487,171.048,41.865,112.419,0.21368,0.0374,-0.0091,-0.0016,0.139342904,0.081803076,0.079359216,0.500036397,0.500456604,0.19
93
+ SLC6A2,1.0,0.0155809,0.0868139,0.0,0.230239,0.0514698,0.0789777,0.0,0.00813318,0.00930065,6.57083,0.0,0.0,0.0,0.260956,3.00986,-0.0039,-0.0075,-0.0014,0.756070495,0.2771183,0.137548853,0.500121811,0.502034344,-0.44
94
+ SLC12A3,1.0,0.0428508,24.9413,0.0,0.0446556,0.010241,0.033439,0.348518,0.0,0.0057934,0.165843,0.749872,0.0455474,0.031119,0.00967003,6.56344,-0.0007,0.002,0.0055,0.250911236,5.54e-18,0.119781483,0.577262555,0.96018788,-1.62
95
+ TUBB3,1.0,24.0836,2.96456,0.761237,1.10894,0.135267,1.28741,0.658431,48.0179,0.172558,45.8705,0.660208,38.0586,0.150437,8.74397,0.30705,-0.0006,-0.0339499999999999,0.00115,0.626313508,0.960789307,0.156063725,0.500008159,0.500050723,-0.76
96
+ ADORA2B,1.0,1.17597,0.90575,0.985767,2.16182,0.261175,13.801,0.36612,11.6443,0.348083,3.06145,0.970129,3.84967,1.0522,1.84249,4.40801,0.0185,0.0143,0.0034,0.517467737,2.01e-05,0.078592804,0.532250116,0.735949176,0.64
97
+ SLC6A4,1.0,0.128064,0.194622,0.0460676,0.306704,0.0419469,1.64547,1.77677,0.0461832,0.0637374,0.688546,0.248634,0.172285,0.130236,0.0889003,2.33887,0.0074,0.0023,0.0035,0.761866033,0.854880095,0.156509966,0.503581992,0.504553919,-0.6
98
+ CA4,1.0,3.4822,16.3461,9.74304,3.97963,0.16907,0.501134,0.434169,0.045292,2.99493,1.0863,10.8483,12.5266,36.1839,0.452809,2.16362,0.0361,0.0031,0.0173499999999999,0.209607884,0.01080885,0.344252042,0.500312556,0.500397364,0.22
99
+ CHRNB1,1.0,8.94195,8.1087,4.14626,5.76212,7.79498,5.76331,9.51713,3.92235,92.0056,4.33191,7.38551,7.20542,2.01193,29.2805,6.90787,-0.0771,0.0003,-0.0072,0.322640508,4.34e-06,0.120892867,0.500019465,0.514229726,-0.4
100
+ NDUFV2,1.0,50.9102,82.218,111.358,50.5888,99.0883,72.4749,138.145,80.28,143.358,67.9897,52.3538,48.7008,20.4194,85.9969,3.9784,0.0023,0.0022,-0.0061,0.287445456,0.007630223,0.104239245,0.500011668,0.500372421,0.13
101
+ PDE4A,1.0,3.91662,7.33943,5.92391,14.2888,1.23723,3.44031,15.5605,16.4294,12.1911,32.6212,11.6078,5.87592,5.28874,6.29746,6.03083,-0.003,0.0097,-0.0032,0.710803688,0.976417636,0.121624721,0.0,0.0,-1.11
102
+ KEAP1,1.0,39.7786,18.5452,22.615,43.4659,21.2222,50.7641,36.7936,52.9517,88.3333,31.1007,34.0948,34.9408,11.5759,37.5018,0.90037,0.0061,0.0223,0.0044,0.764716923,0.251629058,0.152685426,0.507082169,0.509030267,-1.13
103
+ BRD4,1.0,9.5732,18.73,10.2277,32.7676,12.73,24.0635,28.2132,22.2823,24.9878,34.6925,30.851,24.5031,19.5028,19.6762,2.96128,-0.0351,0.0113,-0.01515,0.831385493,0.999993446,0.088841418,0.500004569,0.500060242,-1.48
104
+ PDE4C,1.0,0.358716,3.88782,1.09208,4.82819,0.447421,1.60614,0.683587,0.188661,1.16371,3.79138,2.29922,3.30197,0.0281276,0.310148,8.26686,-0.00645,-0.0104,-0.0057,0.522324622,4.89e-05,0.080689965,0.500070756,0.50260452,0.42
105
+ GRIK5,1.0,5.25308,10.4276,1.09626,11.9139,0.227091,1.79211,0.197888,0.189491,0.354901,86.9284,1.91981,33.6877,0.286419,0.510211,2.53978,-0.0004,-0.0003,-0.001,0.670620084,0.917779688,0.257681701,0.509133101,0.506115038,-1.13
106
+ GRIN2D,1.0,0.787343,0.356308,0.16909,1.21012,0.132584,0.234945,0.313998,6.80052,0.0586515,2.87621,0.494843,0.571317,0.18225,0.544408,2.33202,-0.0006,0.0021,0.0154,0.739532948,0.998648757,0.137368134,0.500534109,0.501601548,-0.8184285714285717
107
+ INSR,1.0,13.4636,15.9292,17.1603,43.6946,22.9703,5.77095,16.1545,7.83435,17.5548,12.5475,90.8835,29.4736,1.44396,28.0393,2.59553,-0.0041,-0.0006,-0.0024,0.743839204,0.186547844,0.388304341,0.501230107,0.507302998,-2.14
108
+ ADORA3,1.0,14.8162,0.483078,0.687136,3.83222,0.472954,1.19194,0.136191,0.0,0.239868,2.32545,4.9652,2.28787,2.24752,7.99497,0.91844,-0.00685,-0.0042,0.0037,0.123297259,0.006057306,0.0682285,0.524665611,0.843638398,-0.09
109
+ ATP1A1,1.0,100.846,498.37,70.317,131.992,34.1715,221.73,269.533,208.799,41.7337,118.85,70.6004,178.044,38.7864,112.426,1.16887,-0.0054,-0.0015,-0.0012,0.824708164,0.99999385,0.498852198,0.501644697,0.508380947,-1.0
110
+ IL6R,1.0,5.5952,4.1569,3.64374,25.9063,38.0337,7.38618,6.70894,4.54585,67.242,6.17905,23.9987,13.5651,52.6906,7.56139,7.10856,-0.0053,0.0027,0.003,0.54232949,0.047869037,0.221850675,0.500636703,0.502625058,-0.16
111
+ CHRNB2,1.0,0.834177,0.116154,0.0208483,0.0737823,0.0428274,0.143031,0.130299,0.0780719,0.0266892,1.97427,0.0851975,7.07578,0.0539968,0.112605,0.82078,0.0338,0.0263,-0.0099,0.646412015,0.720254345,0.196939326,0.500021951,0.517008159,-0.69
112
+ ATP1A4,1.0,0.0859929,0.0350559,0.0684938,0.13657,0.0101497,0.0592329,0.0634868,0.0,0.849222,27.8959,0.223699,0.136271,0.0491981,0.0232253,5.01673,-0.00405,0.0028,-0.002,0.53460449,1.9e-11,0.077686188,0.500293305,0.510034014,0.55
113
+ ADORA1,1.0,43.1844,2.70811,3.55036,1.40266,0.158664,0.812021,0.045492,0.302798,0.708883,35.5194,6.46529,1.59342,0.0399672,0.21497,0.97171,-0.0115,0.0007,-0.0114499999999999,0.572527647,0.021258038,0.255110487,0.500337338,0.501445773,-0.2
114
+ REN,1.0,0.0,7.60327,0.0,1.80489,0.373362,0.204322,0.0,0.0668369,0.0,1.42401,0.163903,0.242582,0.0,0.663159,1.23092,0.00755,0.0173,0.0032,0.352524012,0.006604139,0.10559924,0.605228118,1.0,-0.4
115
+ KCNK2,1.0,2.20775,0.642603,0.0854284,1.39807,0.0143668,0.268337,0.0215678,95.7983,0.431231,0.71059,0.0292021,0.193146,0.0,49.3798,1.00181,0.0046,0.0008,0.001,0.836621523,0.339842885,0.200322211,0.0,0.0,-0.45
116
+ PARP1,1.0,67.5899,18.4726,25.3978,30.7528,13.3773,28.6775,173.97,54.2171,30.8979,50.2458,57.1035,46.376,8.76672,26.1555,10.61131,0.0035,0.0071,0.00545,0.705665529,0.006996931,0.194514712,0.500086197,0.503294681,-0.97
117
+ CHRM3,1.0,0.0682279,0.507317,0.0245066,0.506031,0.103994,1.04468,0.00528917,0.0105065,0.0161315,0.804615,0.41399,0.466764,0.00896111,0.184774,2.13666,-0.0006,-0.0006,0.0011,0.79233712,0.937026128,0.177371139,0.501905482,0.502181703,-0.14
118
+ CNR2,1.0,0.0,0.0330206,0.00552408,0.0386529,0.0632216,0.0665618,12.4284,0.0,0.00446767,0.255117,16.5762,0.0222496,1.24283,0.0122467,2.17679,-0.0125,-0.0028,-0.0258,0.207846448,0.000110726,0.105379175,0.500127884,0.50142072,0.09
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+ GRIK3,1.0,3.06319,0.0749367,0.167802,0.634598,0.0336573,0.525979,0.0107116,0.00626927,0.0451767,1.1607,0.15475,1.33716,0.0170692,0.250881,1.62764,-0.00115,0.00195,-0.0006,0.767620981,0.99998017,0.256151547,0.500277564,0.500185842,-1.68
120
+ FAAH,1.0,61.6621,33.2363,2.36179,14.33,34.4063,18.038,2.72513,1.71692,8.99779,138.944,8.68259,54.3663,4.39832,29.1006,7.49371,-0.0117,-0.0336,0.0139,0.386892766,5.93e-07,0.093402374,0.500584293,0.500898755,-0.47
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+ PDE4B,1.0,26.6753,3.55528,1.92553,3.56202,1.24352,1.52215,13.2123,7.36637,7.34427,3.2333,14.7998,2.54747,5.66715,1.42702,2.67949,0.0033499999999999,0.0002,0.0001,0.71454072,0.709078617,0.178333201,0.502220974,0.50347417,-0.69
122
+ PTGFR,1.0,0.262129,1.88412,0.292734,11.9621,0.676659,0.705891,0.023939,32.4478,1.04838,0.882628,0.365921,0.253461,0.100323,3.45795,2.20806,0.0023,0.0039,-0.0039,0.694935441,0.760040675,0.092061845,0.50188943,0.502174058,0.28
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+ BRDT,1.0,0.0104742,0.0143879,0.0,0.0237103,0.00629905,0.00530498,0.007835,0.0,0.0,114.477,0.0256561,0.0217813,0.00792705,0.00667173,10.16474,0.0139,0.0392,-0.0024,0.464344293,2.47e-06,0.052631346,0.0,0.0,0.78
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+ ADRA1D,1.0,0.242562,0.346661,0.135794,5.03222,0.0391764,0.355352,0.0701199,0.158206,0.345627,1.59672,2.24317,0.0710601,0.00861831,0.456157,3.27584,-0.00705,-0.0049,0.0012,0.45775098081428567,0.011966902842656906,0.078963372,0.613597857,1.0,-0.24142857142857135
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+ RRM2,1.0,0.0883919,0.486886,0.104622,0.264697,0.537272,22.8907,174.485,39.7728,0.0772202,6.58578,11.1039,0.301765,3.26894,1.00747,0.6879,0.00035,-0.0012499999999999,0.00165,0.824708164,0.968270921,0.053062895,0.500587018,0.501489819,-0.25
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+ IL1R1,1.0,5.9228,20.7804,8.20175,63.823,22.6486,23.7998,1.41595,188.511,8.29977,16.2306,42.1608,12.0502,12.4309,59.0051,2.45532,-0.00255,-0.00085,0.0018,0.214144617,0.362921431,0.104614545,0.501429301,0.502458381,0.09
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+ ROCK2,1.0,7.96655,10.3872,6.46575,31.0189,6.75914,11.4886,11.2695,36.765,23.0796,9.54924,19.4876,11.6127,1.80056,10.2005,9.60708,5e-05,0.01875,-0.0003,0.786468923,0.99999999,0.106450474,0.504183751,0.510167818,-1.02
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+ GPD2,1.0,8.27985,6.75911,2.43283,10.8576,1.4968,25.7848,22.9876,23.2863,11.1959,10.4349,8.32753,9.0954,3.30899,4.76649,3.67045,-0.0081,-0.0005,-0.0030499999999999,0.591144443,0.000100775,0.070531428,0.500045901,0.500217639,0.22
130
+ SCN2A,1.0,1.38676,1.54609,0.0143493,0.226576,0.0255395,0.0212193,0.00953275,0.123913,0.00982898,0.357389,0.0874179,4.21768,0.00634743,0.264267,5.25209,-0.0017,-0.0006,-0.0021,0.778094649,0.999999992,0.221317229,0.50591273,0.508965611,-1.99
131
+ SCN7A,1.0,0.750552,0.523984,9.99314,22.1569,0.478821,4.27856,0.0298134,0.056484,2.15007,4.34285,2.46712,1.81284,0.0225716,2.95057,5.53258,0.0038,-0.0005,-0.0003,0.146139458,1.72e-15,0.069810845,0.500067275,0.500385998,0.86
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+ NFE2L2,1.0,51.4208,59.3234,17.7418,90.6966,24.0384,174.265,43.8494,87.6117,29.7704,49.3762,49.334,62.6834,30.8188,48.9406,1.66331,0.01265,0.0037,0.00085,0.824708164,0.686008362,0.17263389,0.50104493,0.50176507,0.04
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134
+ CHRND,1.0,0.0654224,0.00413278,0.0201644,0.0,0.0,0.0,0.0113366,0.0,48.0918,0.616376,0.0667503,0.0878035,0.0165113,0.0655095,2.25073,-0.0647,-0.0119,-0.0249,0.369415909,7.26e-07,0.180162134,0.500019439,0.514198318,-0.4
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+ NDUFA10,1.0,30.0649,34.4902,50.0937,41.2536,21.826,37.9873,47.7041,44.2373,39.8612,39.3852,31.9488,39.3495,9.72085,46.5858,6.32741,-0.0046,-0.00065,-0.0014,0.24992983,0.00138794,0.116073213,0.500010968,0.500352307,0.06
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+ KCNK3,1.0,1.29606,2.46963,0.560941,7.77762,0.279457,1.28514,0.0314508,0.0649233,0.368533,0.812116,1.58644,12.9208,0.0223808,248.278,0.41051,0.02405,0.0027,0.0274,0.6910811949999999,0.6468724378,0.079957142,0.505402002,0.506949796,-0.6871428571428575
138
+ XDH,1.0,0.00548912,0.200846,0.00904057,0.0736628,26.0548,7.61611,0.00783612,0.604859,0.0776557,0.215415,0.00953319,1.85969,0.0,0.0107264,6.67765,-0.0004,0.0016,0.0014,0.492040008,1.56e-13,0.090605551,0.501244439,0.503805654,1.29
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+ CD80,1.0,0.123106,0.263469,0.0379345,0.0720831,0.110068,0.119011,74.2731,0.0,0.0390024,0.207522,3.30099,0.150833,0.143977,0.165819,1.86871,-0.001,-0.0012,0.00095,0.132359073,0.255224581,0.12056353,0.509626004,0.514806636,0.62
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+ CD86,1.0,7.24871,1.0428,0.375817,2.15654,0.525548,1.12362,49.0947,0.0,0.178366,1.66016,16.3398,1.33988,11.2185,3.07599,7.86446,0.00685,0.00065,0.0023,0.537654281,0.962700436,0.104993055,0.50963014,0.514812998,0.71
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example/notebooks/data_preprocessing.ipynb ADDED
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1
+ {
2
+ "cells": [
3
+ {
4
+ "cell_type": "markdown",
5
+ "id": "70438228",
6
+ "metadata": {},
7
+ "source": [
8
+ "# Data Preprocessing (Interactive Notebook)\n",
9
+ "\n",
10
+ "This notebook runs the repository's Step1→Step9 data-preprocessing steps interactively so you can execute, inspect and debug individual stages locally.\n",
11
+ "\n",
12
+ "Outputs from these steps will be written under `example/data_preprocessing` and downstream under `example/machine_learning` by default."
13
+ ]
14
+ },
15
+ {
16
+ "cell_type": "code",
17
+ "execution_count": null,
18
+ "id": "2348a749",
19
+ "metadata": {},
20
+ "outputs": [],
21
+ "source": [
22
+ "%%bash\n",
23
+ "git clone https://github.com/hlnicholls/GenePrioritiser\n",
24
+ "cd GenePrioritiser\n",
25
+ "\n",
26
+ "conda env create -f GenePrioritiser_env.yml\n",
27
+ "conda activate GenePrioritiser_env\n",
28
+ "pip install --force-reinstall scikit-learn==1.4.2\n",
29
+ "pip install --force-reinstall scipy==1.11.4\n",
30
+ "pip install --force-reinstall numpy==1.23.0\n",
31
+ "pip install scikit-optimize\n",
32
+ "conda install -c bioconda bedtools htslib\n",
33
+ "conda install -c conda-forge parallel\n",
34
+ "pip install pybedtools intervaltree requests"
35
+ ]
36
+ },
37
+ {
38
+ "cell_type": "code",
39
+ "execution_count": 1,
40
+ "id": "74317926",
41
+ "metadata": {},
42
+ "outputs": [],
43
+ "source": [
44
+ "import os\n",
45
+ "os.chdir(\"/Users/hannahnicholls/GitHub/GenePrioritiser\")"
46
+ ]
47
+ },
48
+ {
49
+ "cell_type": "code",
50
+ "execution_count": 2,
51
+ "id": "d9113571",
52
+ "metadata": {},
53
+ "outputs": [
54
+ {
55
+ "name": "stdout",
56
+ "output_type": "stream",
57
+ "text": [
58
+ "Using cached gene bed: /Users/hannahnicholls/GitHub/GenePrioritiser/utils/gencode_v19.genes.ext10000.sorted.bed\n",
59
+ "Processing /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_DBP.txt.gz in /Users/hannahnicholls/GitHub/GenePrioritiser/tmp_annotation_Evangelou_30224653_DBP.txt_27680\n",
60
+ "Parsing GWAS input and extracting SNP positions (Python)...\n",
61
+ "Extracted 7160657 SNP positions from /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_DBP.txt.gz\n",
62
+ "Running bedtools closest (this is the fast step, but can be I/O heavy on large GWAS)...\n",
63
+ "Building gene map (line -> gene, distance)...\n",
64
+ "Joining original rows with gene map and writing outputs via Python...\n",
65
+ "Wrote annotated 7160657 SNPs to ./example/data_preprocessing/output/variants/Annotated_GWAS_DBP.csv\n",
66
+ "Wrote variant data to ./example/data_preprocessing/output/variants/variant_data_DBP.csv\n",
67
+ "Cleaning up temporary files: /Users/hannahnicholls/GitHub/GenePrioritiser/tmp_annotation_Evangelou_30224653_DBP.txt_27680\n",
68
+ "Done for /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_DBP.txt.gz\n",
69
+ "Processing /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_SBP.txt.gz in /Users/hannahnicholls/GitHub/GenePrioritiser/tmp_annotation_Evangelou_30224653_SBP.txt_27680\n",
70
+ "Parsing GWAS input and extracting SNP positions (Python)...\n",
71
+ "Extracted 7088121 SNP positions from /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_SBP.txt.gz\n",
72
+ "Running bedtools closest (this is the fast step, but can be I/O heavy on large GWAS)...\n",
73
+ "Building gene map (line -> gene, distance)...\n",
74
+ "Joining original rows with gene map and writing outputs via Python...\n",
75
+ "Wrote annotated 7088121 SNPs to ./example/data_preprocessing/output/variants/Annotated_GWAS_SBP.csv\n",
76
+ "Wrote variant data to ./example/data_preprocessing/output/variants/variant_data_SBP.csv\n",
77
+ "Cleaning up temporary files: /Users/hannahnicholls/GitHub/GenePrioritiser/tmp_annotation_Evangelou_30224653_SBP.txt_27680\n",
78
+ "Done for /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_SBP.txt.gz\n",
79
+ "Processing /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_PP.txt.gz in /Users/hannahnicholls/GitHub/GenePrioritiser/tmp_annotation_Evangelou_30224653_PP.txt_27680\n",
80
+ "Parsing GWAS input and extracting SNP positions (Python)...\n",
81
+ "Extracted 7088842 SNP positions from /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_PP.txt.gz\n",
82
+ "Running bedtools closest (this is the fast step, but can be I/O heavy on large GWAS)...\n",
83
+ "Building gene map (line -> gene, distance)...\n",
84
+ "Joining original rows with gene map and writing outputs via Python...\n",
85
+ "Wrote annotated 7088842 SNPs to ./example/data_preprocessing/output/variants/Annotated_GWAS_PP.csv\n",
86
+ "Wrote variant data to ./example/data_preprocessing/output/variants/variant_data_PP.csv\n",
87
+ "Cleaning up temporary files: /Users/hannahnicholls/GitHub/GenePrioritiser/tmp_annotation_Evangelou_30224653_PP.txt_27680\n",
88
+ "Done for /Users/hannahnicholls/GitHub/GenePrioritiser/./example/data_preprocessing/input/Evangelou_30224653_PP.txt.gz\n"
89
+ ]
90
+ }
91
+ ],
92
+ "source": [
93
+ "!bash /Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step1_annotate_genes_bedtools.sh"
94
+ ]
95
+ },
96
+ {
97
+ "cell_type": "code",
98
+ "execution_count": 3,
99
+ "id": "9ff8bfe6",
100
+ "metadata": {},
101
+ "outputs": [
102
+ {
103
+ "name": "stdout",
104
+ "output_type": "stream",
105
+ "text": [
106
+ "Repo root : /Users/hannahnicholls/GitHub/GenePrioritiser\n",
107
+ "Variant directory : example/data_preprocessing/output/variants\n",
108
+ "HGNC file : /Users/hannahnicholls/GitHub/GenePrioritiser/utils/hgnc_complete_set.txt\n",
109
+ "Building HGNC synonym map...\n",
110
+ "Loaded 102319 synonym mappings\n",
111
+ "\n",
112
+ "=== Harmonising Annotated_GWAS_* files ===\n",
113
+ " Processing Annotated_GWAS_DBP.csv ... [OK, 428054 gene names changed]\n",
114
+ " Processing Annotated_GWAS_PP.csv ... [OK, 423689 gene names changed]\n",
115
+ " Processing Annotated_GWAS_SBP.csv ... [OK, 423690 gene names changed]\n",
116
+ "\n",
117
+ "=== Harmonising variant_data_* files ===\n",
118
+ " Processing variant_data_DBP.csv ... [OK, 428054 gene names changed]\n",
119
+ " Processing variant_data_PP.csv ... [OK, 423689 gene names changed]\n",
120
+ " Processing variant_data_SBP.csv ... [OK, 423690 gene names changed]\n",
121
+ "\n",
122
+ "Done. All applicable files overwritten with HGNC-harmonised Gene symbols.\n"
123
+ ]
124
+ }
125
+ ],
126
+ "source": [
127
+ "!python /Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step2_harmonise_genes.py"
128
+ ]
129
+ },
130
+ {
131
+ "cell_type": "code",
132
+ "execution_count": 4,
133
+ "id": "8a20f2dd",
134
+ "metadata": {},
135
+ "outputs": [
136
+ {
137
+ "name": "stdout",
138
+ "output_type": "stream",
139
+ "text": [
140
+ "All files processed and merged. Output saved to: ./databases/variant_level/merged_gene_median_variant_measures.csv\n"
141
+ ]
142
+ }
143
+ ],
144
+ "source": [
145
+ "!python /Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step3_process_variant_level_data.py"
146
+ ]
147
+ },
148
+ {
149
+ "cell_type": "code",
150
+ "execution_count": 5,
151
+ "id": "1ef583bf",
152
+ "metadata": {},
153
+ "outputs": [
154
+ {
155
+ "name": "stdout",
156
+ "output_type": "stream",
157
+ "text": [
158
+ "Number of unmapped entries: 0\n",
159
+ "Sample unmapped entries:\n",
160
+ "Empty DataFrame\n",
161
+ "Columns: [protein1, protein2, coexpression, experiments, database, Gene1, Gene2]\n",
162
+ "Index: []\n",
163
+ "Interactors collected with max_depth=3: 19430 genes\n",
164
+ "Direct only interactors (depth=1): 17554\n",
165
+ "One-level interactors (depth=2): 19428\n",
166
+ "Found 3 annotated GWAS file(s) to load:\n",
167
+ " - ./example/data_preprocessing/output/variants/Annotated_GWAS_DBP.csv\n",
168
+ " - ./example/data_preprocessing/output/variants/Annotated_GWAS_PP.csv\n",
169
+ " - ./example/data_preprocessing/output/variants/Annotated_GWAS_SBP.csv\n",
170
+ "Wrote intermediate least-likely genes to /Users/hannahnicholls/GitHub/GenePrioritiser/example/data_preprocessing/input/sampling/least_likely_intermediate.tsv (will not overwrite ./example/data_preprocessing/input/least_likely_genes.tsv)\n",
171
+ "Applying additional filtering based on: ./example/data_preprocessing/input/BP_loci_Apr2020_LDr2-8_500kb.csv\n",
172
+ "Filtered out 65 genes based on additional criteria (no genes with SNPs in any LD with any BP loci).\n",
173
+ "Updated intermediate least-likely genes at /Users/hannahnicholls/GitHub/GenePrioritiser/example/data_preprocessing/input/sampling/least_likely_intermediate.tsv\n",
174
+ "Least likely genes identified and saved.\n",
175
+ "Number of least likely genes: 571\n",
176
+ "Number of probable genes: 145\n",
177
+ "Number of most likely genes: 51\n"
178
+ ]
179
+ }
180
+ ],
181
+ "source": [
182
+ "!python /Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step4_least_likely_gene_selection.py"
183
+ ]
184
+ },
185
+ {
186
+ "cell_type": "code",
187
+ "execution_count": 6,
188
+ "id": "e42781c2",
189
+ "metadata": {},
190
+ "outputs": [
191
+ {
192
+ "name": "stdout",
193
+ "output_type": "stream",
194
+ "text": [
195
+ "Using intermediate least-likely genes file: /Users/hannahnicholls/GitHub/GenePrioritiser/example/data_preprocessing/input/sampling/least_likely_intermediate.tsv\n",
196
+ "Identified 13758 genes with at least one P<0.01 SNP in EACH Annotated_GWAS file (per-file intersection)\n",
197
+ "Probable genes: 254 -> 145 after applying per-file P<0.01 intersection filter\n"
198
+ ]
199
+ }
200
+ ],
201
+ "source": [
202
+ "!python /Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step6_identify_training_genes.py"
203
+ ]
204
+ },
205
+ {
206
+ "cell_type": "code",
207
+ "execution_count": 7,
208
+ "id": "33902de9",
209
+ "metadata": {},
210
+ "outputs": [
211
+ {
212
+ "name": "stdout",
213
+ "output_type": "stream",
214
+ "text": [
215
+ "Found 5116 duplicate Gene entries in merged data - aggregating numeric features by mean to collapse duplicates.\n",
216
+ "All merged databases saved to ./example/data_preprocessing/output/all_genes_merged_all_data.csv\n",
217
+ "Training genes counts per label:\n",
218
+ " least likely: 571\n",
219
+ " probable: 145\n",
220
+ " most likely: 51\n",
221
+ "Joined data saved to ['./example/data_preprocessing/output/training_data_all_features.csv', './example/machine_learning/eda/input/training_data_all_features.csv']\n"
222
+ ]
223
+ }
224
+ ],
225
+ "source": [
226
+ "!python /Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step7_merge_all_databases_and_get_training_data.py"
227
+ ]
228
+ },
229
+ {
230
+ "cell_type": "code",
231
+ "execution_count": 8,
232
+ "id": "f2f179e1",
233
+ "metadata": {},
234
+ "outputs": [
235
+ {
236
+ "name": "stdout",
237
+ "output_type": "stream",
238
+ "text": [
239
+ "Using intermediate least-likely genes file: /Users/hannahnicholls/GitHub/GenePrioritiser/example/data_preprocessing/input/sampling/least_likely_intermediate.tsv\n",
240
+ "/Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step8_downsample_least_likely_genes.py:311: UserWarning: The palette list has more values (2) than needed (1), which may not be intended.\n",
241
+ " sns.boxplot(data=[combined_pos['variant_count'], least_df['variant_count']], palette=['C0', 'C1'])\n",
242
+ "Wrote diagnostic plots: /Users/hannahnicholls/GitHub/GenePrioritiser/example/data_preprocessing/input/sampling/variant_count_hist_seed42.png /Users/hannahnicholls/GitHub/GenePrioritiser/example/data_preprocessing/input/sampling/variant_count_box_seed42.png\n",
243
+ "Wrote updated training_genes to ./example/data_preprocessing/input/training_genes.txt\n",
244
+ "Wrote sampled least file: /Users/hannahnicholls/GitHub/GenePrioritiser/example/data_preprocessing/input/sampling/least_likely_sampled_seed42.tsv\n",
245
+ "Wrote audit: /Users/hannahnicholls/GitHub/GenePrioritiser/example/data_preprocessing/input/sampling/least_likely_sampling_audit_seed42.json\n",
246
+ "Sampled size: 51 target: 51\n",
247
+ "Wrote training features to: ./example/data_preprocessing/output/training_data_all_features.csv\n",
248
+ "Wrote EDA training input to: ./example/machine_learning/eda/input/training_data_all_features.csv\n"
249
+ ]
250
+ }
251
+ ],
252
+ "source": [
253
+ "!python /Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step8_downsample_least_likely_genes.py"
254
+ ]
255
+ },
256
+ {
257
+ "cell_type": "code",
258
+ "execution_count": 9,
259
+ "id": "26b264fa",
260
+ "metadata": {},
261
+ "outputs": [],
262
+ "source": [
263
+ "!python /Users/hannahnicholls/GitHub/GenePrioritiser/src/data_preprocessing/Step9_subset_genes_to_prioritise.py"
264
+ ]
265
+ },
266
+ {
267
+ "cell_type": "code",
268
+ "execution_count": null,
269
+ "id": "58784add",
270
+ "metadata": {},
271
+ "outputs": [],
272
+ "source": []
273
+ }
274
+ ],
275
+ "metadata": {
276
+ "kernelspec": {
277
+ "display_name": "GenePrioritiser_env",
278
+ "language": "python",
279
+ "name": "python3"
280
+ },
281
+ "language_info": {
282
+ "codemirror_mode": {
283
+ "name": "ipython",
284
+ "version": 3
285
+ },
286
+ "file_extension": ".py",
287
+ "mimetype": "text/x-python",
288
+ "name": "python",
289
+ "nbconvert_exporter": "python",
290
+ "pygments_lexer": "ipython3",
291
+ "version": "3.9.19"
292
+ }
293
+ },
294
+ "nbformat": 4,
295
+ "nbformat_minor": 5
296
+ }
example/notebooks/machine_learning.ipynb ADDED
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