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Final validation - 888 patients

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Files changed (5) hide show
  1. validation/dice_vs_volerr.png +2 -2
  2. validation/metrics_distribution.png +2 -2
  3. validation/validation_report.txt +73 -14
  4. validation/validation_results.csv +335 -0
  5. validation/validation_results.json +12 -0
validation/dice_vs_volerr.png CHANGED

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validation/metrics_distribution.png CHANGED

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validation/validation_report.txt CHANGED
@@ -5,10 +5,10 @@
5
 
6
  Method : HU threshold (-400 HU) + morphology + flood-fill
7
  Dataset : LUNA16 (Yousra0x0/LUNA16_RAW)
8
- Patients : 553
9
- Valid : 500
10
- Failing : 5 (Dice < 0.85)
11
- Date : 2026-05-01 20:21
12
 
13
  HYPERPARAMETERS
14
  ------------------------------------------------------------
@@ -22,19 +22,19 @@
22
 
23
  GLOBAL METRICS
24
  ------------------------------------------------------------
25
- dice : mean=0.9832 std=0.0470 min=0.3523 max=0.9967 CI95=[0.9791, 0.9874] n=500
26
- iou : mean=0.9698 std=0.0615 min=0.2138 max=0.9935 CI95=[0.9644, 0.9752] n=500
27
- f1 : mean=0.9832 std=0.0470 min=0.3523 max=0.9967 CI95=[0.9791, 0.9874] n=500
28
- precision : mean=0.9864 std=0.0272 min=0.4936 max=0.9984 CI95=[0.9840, 0.9887] n=500
29
- recall : mean=0.9831 std=0.0562 min=0.2140 max=0.9966 CI95=[0.9781, 0.9880] n=500
30
- sensitivity : mean=0.9831 std=0.0562 min=0.2140 max=0.9966 CI95=[0.9781, 0.9880] n=500
31
- specificity : mean=0.9981 std=0.0033 min=0.9428 max=0.9999 CI95=[0.9978, 0.9984] n=500
32
- hd95 : mean=4.0341 std=12.7010 min=1.0000 max=140.2605 CI95=[2.9197, 5.1485] n=500
33
- vol_error : mean=0.0131 std=0.0743 min=0.0000 max=1.0138 CI95=[0.0066, 0.0196] n=500
34
 
35
  ============================================================
36
  FAILURE CASE REPORT
37
- Total failing cases: 58
38
  Dice threshold: 0.85
39
  ============================================================
40
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@@ -90,8 +90,67 @@
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93
  1.3.6.1.4.1.14519.5.2.1.6279.6001.2430942735182133 Dice=0.3523 HD95=140.3 VolErr=0.7848
94
  1.3.6.1.4.1.14519.5.2.1.6279.6001.1304385508908165 Dice=0.4627 HD95=129.2 VolErr=0.6940
95
  1.3.6.1.4.1.14519.5.2.1.6279.6001.1728451851658071 Dice=0.4754 HD95=120.9 VolErr=0.6816
 
 
96
  1.3.6.1.4.1.14519.5.2.1.6279.6001.2028116841167686 Dice=0.6596 HD95=100.7 VolErr=1.0138
97
  1.3.6.1.4.1.14519.5.2.1.6279.6001.3989559720492861 Dice=0.8223 HD95=67.6 VolErr=0.3871
 
5
 
6
  Method : HU threshold (-400 HU) + morphology + flood-fill
7
  Dataset : LUNA16 (Yousra0x0/LUNA16_RAW)
8
+ Patients : 888
9
+ Valid : 779
10
+ Failing : 8 (Dice < 0.85)
11
+ Date : 2026-05-02 10:05
12
 
13
  HYPERPARAMETERS
14
  ------------------------------------------------------------
 
22
 
23
  GLOBAL METRICS
24
  ------------------------------------------------------------
25
+ dice : mean=0.9829 std=0.0487 min=0.3467 max=0.9967 CI95=[0.9795, 0.9863] n=779
26
+ iou : mean=0.9694 std=0.0635 min=0.2097 max=0.9935 CI95=[0.9650, 0.9739] n=779
27
+ f1 : mean=0.9829 std=0.0487 min=0.3467 max=0.9967 CI95=[0.9795, 0.9863] n=779
28
+ precision : mean=0.9859 std=0.0303 min=0.4273 max=0.9984 CI95=[0.9838, 0.9881] n=779
29
+ recall : mean=0.9831 std=0.0569 min=0.2102 max=0.9966 CI95=[0.9791, 0.9871] n=779
30
+ sensitivity : mean=0.9831 std=0.0569 min=0.2102 max=0.9966 CI95=[0.9791, 0.9871] n=779
31
+ specificity : mean=0.9981 std=0.0034 min=0.9428 max=0.9999 CI95=[0.9978, 0.9983] n=779
32
+ hd95 : mean=4.0393 std=12.8756 min=1.0000 max=140.2605 CI95=[3.1346, 4.9441] n=779
33
+ vol_error : mean=0.0140 std=0.0832 min=0.0000 max=1.2994 CI95=[0.0081, 0.0198] n=779
34
 
35
  ============================================================
36
  FAILURE CASE REPORT
37
+ Total failing cases: 117
38
  Dice threshold: 0.85
39
  ============================================================
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validation/validation_results.csv CHANGED
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validation/validation_results.json CHANGED
@@ -1,6 +1,18 @@
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  {
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  "method": "algorithmic_HU_threshold_morphology",
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  "n_patients": 888,
 
 
 
 
 
 
 
 
 
 
 
 
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  "summary": {
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