hourouu commited on
Commit
59ef498
·
verified ·
1 Parent(s): 54e3b3b

Checkpoint - 218 patients validated

Browse files
artifacts/1.3.6.1.4.1.14519.5.2.1.6279.6001.172845185165807139298420209778.png ADDED

Git LFS Details

  • SHA256: 07bcabf0b801563af7d8f7a3ae18f2d80896f909e6480110657db2ca253c0064
  • Pointer size: 132 Bytes
  • Size of remote file: 1.2 MB
validation/validation_results.json CHANGED
@@ -1,96 +1,96 @@
1
  {
2
  "method": "algorithmic_HU_threshold_morphology",
3
- "n_patients": 208,
4
  "summary": {
5
  "dice": {
6
- "mean": 0.9806053503636023,
7
- "std": 0.0614730952652286,
8
  "min": 0.352285982954482,
9
  "max": 0.9949860742147286,
10
- "median": 0.9893750094930941,
11
- "ci95_lo": 0.9722309064231265,
12
- "ci95_hi": 0.9889797943040781,
13
- "n": 208
14
  },
15
  "iou": {
16
- "mean": 0.9666719679329235,
17
- "std": 0.0786341554818589,
18
  "min": 0.21380286828304734,
19
  "max": 0.9900221764960052,
20
- "median": 0.9789734264209383,
21
- "ci95_lo": 0.9559596827608774,
22
- "ci95_hi": 0.9773842531049697,
23
- "n": 208
24
  },
25
  "f1": {
26
- "mean": 0.9806053503636023,
27
- "std": 0.0614730952652286,
28
  "min": 0.352285982954482,
29
  "max": 0.9949860742147286,
30
- "median": 0.9893750094930941,
31
- "ci95_lo": 0.9722309064231265,
32
- "ci95_hi": 0.9889797943040781,
33
- "n": 208
34
  },
35
  "precision": {
36
- "mean": 0.9858659626610113,
37
- "std": 0.03510495682509411,
38
  "min": 0.4935622697127371,
39
  "max": 0.998282703489532,
40
- "median": 0.9904620844281498,
41
- "ci95_lo": 0.9810836348524609,
42
- "ci95_hi": 0.9906482904695618,
43
- "n": 208
44
  },
45
  "recall": {
46
- "mean": 0.9803883295887428,
47
- "std": 0.07187053194168343,
48
  "min": 0.2140477563259332,
49
  "max": 0.9939349950623046,
50
- "median": 0.9884992426797634,
51
- "ci95_lo": 0.9705974489096264,
52
- "ci95_hi": 0.9901792102678592,
53
- "n": 208
54
  },
55
  "sensitivity": {
56
- "mean": 0.9803883295887428,
57
- "std": 0.07187053194168343,
58
  "min": 0.2140477563259332,
59
  "max": 0.9939349950623046,
60
- "median": 0.9884992426797634,
61
- "ci95_lo": 0.9705974489096264,
62
- "ci95_hi": 0.9901792102678592,
63
- "n": 208
64
  },
65
  "specificity": {
66
- "mean": 0.9980180022090762,
67
- "std": 0.004021813867669061,
68
  "min": 0.9427512586157162,
69
  "max": 0.9998290105046012,
70
- "median": 0.998621688736816,
71
- "ci95_lo": 0.9974701128498613,
72
- "ci95_hi": 0.9985658915682911,
73
- "n": 208
74
  },
75
  "hd95": {
76
- "mean": 4.571321268530062,
77
- "std": 15.416560237361395,
78
  "min": 1.0,
79
  "max": 140.26047197981333,
80
- "median": 1.4142135623730951,
81
- "ci95_lo": 2.4711322524129766,
82
- "ci95_hi": 6.671510284647148,
83
- "n": 208
84
  },
85
  "vol_error": {
86
- "mean": 0.017516949721495173,
87
- "std": 0.10014267185185116,
88
  "min": 6.480638398430575e-06,
89
  "max": 1.013798574273241,
90
- "median": 0.00382939060194856,
91
- "ci95_lo": 0.0038745718998733827,
92
- "ci95_hi": 0.03115932754311696,
93
- "n": 208
94
  }
95
  },
96
  "per_patient": {
@@ -4253,6 +4253,206 @@
4253
  "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.144883090372691745980459537053",
4254
  "subset": "subset2",
4255
  "failure_case": false
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
4256
  }
4257
  }
4258
  }
 
1
  {
2
  "method": "algorithmic_HU_threshold_morphology",
3
+ "n_patients": 218,
4
  "summary": {
5
  "dice": {
6
+ "mean": 0.9786035666301857,
7
+ "std": 0.06910002150180133,
8
  "min": 0.352285982954482,
9
  "max": 0.9949860742147286,
10
+ "median": 0.9893582779139021,
11
+ "ci95_lo": 0.9694095690111456,
12
+ "ci95_hi": 0.9877975642492257,
13
+ "n": 218
14
  },
15
  "iou": {
16
+ "mean": 0.9640853288331321,
17
+ "std": 0.08868310383402345,
18
  "min": 0.21380286828304734,
19
  "max": 0.9900221764960052,
20
+ "median": 0.9789406634751446,
21
+ "ci95_lo": 0.9522857341618362,
22
+ "ci95_hi": 0.9758849235044281,
23
+ "n": 218
24
  },
25
  "f1": {
26
+ "mean": 0.9786035666301857,
27
+ "std": 0.06910002150180133,
28
  "min": 0.352285982954482,
29
  "max": 0.9949860742147286,
30
+ "median": 0.9893582779139021,
31
+ "ci95_lo": 0.9694095690111456,
32
+ "ci95_hi": 0.9877975642492257,
33
+ "n": 218
34
  },
35
  "precision": {
36
+ "mean": 0.9859494065565075,
37
+ "std": 0.03430196475132362,
38
  "min": 0.4935622697127371,
39
  "max": 0.998282703489532,
40
+ "median": 0.990374661317438,
41
+ "ci95_lo": 0.9813854111278832,
42
+ "ci95_hi": 0.9905134019851318,
43
+ "n": 218
44
  },
45
  "recall": {
46
+ "mean": 0.9776612290709531,
47
+ "std": 0.08345383090725432,
48
  "min": 0.2140477563259332,
49
  "max": 0.9939349950623046,
50
+ "median": 0.9884685872103087,
51
+ "ci95_lo": 0.9665574073067144,
52
+ "ci95_hi": 0.9887650508351918,
53
+ "n": 218
54
  },
55
  "sensitivity": {
56
+ "mean": 0.9776612290709531,
57
+ "std": 0.08345383090725432,
58
  "min": 0.2140477563259332,
59
  "max": 0.9939349950623046,
60
+ "median": 0.9884685872103087,
61
+ "ci95_lo": 0.9665574073067144,
62
+ "ci95_hi": 0.9887650508351918,
63
+ "n": 218
64
  },
65
  "specificity": {
66
+ "mean": 0.9980106418224698,
67
+ "std": 0.0039336933767118295,
68
  "min": 0.9427512586157162,
69
  "max": 0.9998290105046012,
70
+ "median": 0.9986002919252615,
71
+ "ci95_lo": 0.9974872502698553,
72
+ "ci95_hi": 0.9985340333750843,
73
+ "n": 218
74
  },
75
  "hd95": {
76
+ "mean": 5.056323167655148,
77
+ "std": 16.9938634274073,
78
  "min": 1.0,
79
  "max": 140.26047197981333,
80
+ "median": 1.5731321849709863,
81
+ "ci95_lo": 2.7952306745681406,
82
+ "ci95_hi": 7.3174156607421565,
83
+ "n": 218
84
  },
85
  "vol_error": {
86
+ "mean": 0.020019178419902302,
87
+ "std": 0.1076687039455035,
88
  "min": 6.480638398430575e-06,
89
  "max": 1.013798574273241,
90
+ "median": 0.003795068361996107,
91
+ "ci95_lo": 0.005693483778920497,
92
+ "ci95_hi": 0.03434487306088411,
93
+ "n": 218
94
  }
95
  },
96
  "per_patient": {
 
4253
  "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.144883090372691745980459537053",
4254
  "subset": "subset2",
4255
  "failure_case": false
4256
+ },
4257
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.325580698241281352835338693869": {
4258
+ "dice": 0.988143235216168,
4259
+ "iou": 0.9765643415224606,
4260
+ "f1": 0.988143235216168,
4261
+ "precision": 0.9926596063780799,
4262
+ "recall": 0.983667774804079,
4263
+ "sensitivity": 0.983667774804079,
4264
+ "specificity": 0.9988984141889948,
4265
+ "hd95": 1.7320508075688772,
4266
+ "vol_error": 0.009058323232080778,
4267
+ "tp": 4917729,
4268
+ "fp": 36365,
4269
+ "fn": 81651,
4270
+ "tn": 32975135,
4271
+ "pred_voxels": 4954094,
4272
+ "gt_voxels": 4999380,
4273
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.325580698241281352835338693869",
4274
+ "subset": "subset2",
4275
+ "failure_case": false
4276
+ },
4277
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.172845185165807139298420209778": {
4278
+ "dice": 0.475422180309299,
4279
+ "iou": 0.3118385786340365,
4280
+ "f1": 0.475422180309299,
4281
+ "precision": 0.9842124869715932,
4282
+ "recall": 0.3134062765581413,
4283
+ "sensitivity": 0.3134062765581413,
4284
+ "specificity": 0.9974919322745565,
4285
+ "hd95": 120.88837826689544,
4286
+ "vol_error": 0.6815664496165333,
4287
+ "tp": 5933947,
4288
+ "fp": 95185,
4289
+ "fn": 12999774,
4290
+ "tn": 37856342,
4291
+ "pred_voxels": 6029132,
4292
+ "gt_voxels": 18933721,
4293
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.172845185165807139298420209778",
4294
+ "subset": "subset2",
4295
+ "failure_case": true
4296
+ },
4297
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.142485715518010940961688015191": {
4298
+ "dice": 0.9894432041233504,
4299
+ "iou": 0.9791069716819008,
4300
+ "f1": 0.9894432041233504,
4301
+ "precision": 0.9910177465964256,
4302
+ "recall": 0.9878736570225487,
4303
+ "sensitivity": 0.9878736570225487,
4304
+ "specificity": 0.9983404491310536,
4305
+ "hd95": 3.0,
4306
+ "vol_error": 0.0031725865502159915,
4307
+ "tp": 12633851,
4308
+ "fp": 114509,
4309
+ "fn": 155083,
4310
+ "tn": 68885485,
4311
+ "pred_voxels": 12748360,
4312
+ "gt_voxels": 12788934,
4313
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.142485715518010940961688015191",
4314
+ "subset": "subset2",
4315
+ "failure_case": false
4316
+ },
4317
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.311236942972970815890902714604": {
4318
+ "dice": 0.9875589533504409,
4319
+ "iou": 0.9754236620675749,
4320
+ "f1": 0.9875589533504409,
4321
+ "precision": 0.9832275949806315,
4322
+ "recall": 0.9919286419632859,
4323
+ "sensitivity": 0.9919286419632859,
4324
+ "specificity": 0.995706287034776,
4325
+ "hd95": 6.4031242374328485,
4326
+ "vol_error": 0.008849473943849322,
4327
+ "tp": 24261663,
4328
+ "fp": 413868,
4329
+ "fn": 197418,
4330
+ "tn": 95975435,
4331
+ "pred_voxels": 24675531,
4332
+ "gt_voxels": 24459081,
4333
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.311236942972970815890902714604",
4334
+ "subset": "subset2",
4335
+ "failure_case": false
4336
+ },
4337
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.156322145453198768801776721493": {
4338
+ "dice": 0.9894827401796216,
4339
+ "iou": 0.9791844033970333,
4340
+ "f1": 0.9894827401796216,
4341
+ "precision": 0.9888864978025806,
4342
+ "recall": 0.9900797019909997,
4343
+ "sensitivity": 0.9900797019909997,
4344
+ "specificity": 0.9980254388475386,
4345
+ "hd95": 5.744562646538029,
4346
+ "vol_error": 0.0012066138945880807,
4347
+ "tp": 18932410,
4348
+ "fp": 212770,
4349
+ "fn": 189697,
4350
+ "tn": 107542819,
4351
+ "pred_voxels": 19145180,
4352
+ "gt_voxels": 19122107,
4353
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.156322145453198768801776721493",
4354
+ "subset": "subset2",
4355
+ "failure_case": false
4356
+ },
4357
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.191301539558980174217770205256": {
4358
+ "dice": 0.9879570482560635,
4359
+ "iou": 0.9762007102106026,
4360
+ "f1": 0.9879570482560635,
4361
+ "precision": 0.9892994967460577,
4362
+ "recall": 0.9866182381501655,
4363
+ "sensitivity": 0.9866182381501655,
4364
+ "specificity": 0.99787142043954,
4365
+ "hd95": 3.1622776601683795,
4366
+ "vol_error": 0.002710259739049461,
4367
+ "tp": 5505239,
4368
+ "fp": 59546,
4369
+ "fn": 74669,
4370
+ "tn": 27914978,
4371
+ "pred_voxels": 5564785,
4372
+ "gt_voxels": 5579908,
4373
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.191301539558980174217770205256",
4374
+ "subset": "subset2",
4375
+ "failure_case": false
4376
+ },
4377
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.240969450540588211676803094518": {
4378
+ "dice": 0.9897008648913367,
4379
+ "iou": 0.9796117115203633,
4380
+ "f1": 0.9897008648913367,
4381
+ "precision": 0.9892389345692553,
4382
+ "recall": 0.9901632268165469,
4383
+ "sensitivity": 0.9901632268165469,
4384
+ "specificity": 0.9991104946540253,
4385
+ "hd95": 1.0,
4386
+ "vol_error": 0.0009343468144977538,
4387
+ "tp": 2633450,
4388
+ "fp": 28647,
4389
+ "fn": 26162,
4390
+ "tn": 32176893,
4391
+ "pred_voxels": 2662097,
4392
+ "gt_voxels": 2659612,
4393
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.240969450540588211676803094518",
4394
+ "subset": "subset2",
4395
+ "failure_case": false
4396
+ },
4397
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.199975006921901879512837687266": {
4398
+ "dice": 0.9867774379274483,
4399
+ "iou": 0.9738999849243306,
4400
+ "f1": 0.9867774379274483,
4401
+ "precision": 0.9850977371302074,
4402
+ "recall": 0.9884628766604698,
4403
+ "sensitivity": 0.9884628766604698,
4404
+ "specificity": 0.9977372113652377,
4405
+ "hd95": 5.0990195135927845,
4406
+ "vol_error": 0.0034160463509601323,
4407
+ "tp": 8514381,
4408
+ "fp": 128803,
4409
+ "fn": 99378,
4410
+ "tn": 56793438,
4411
+ "pred_voxels": 8643184,
4412
+ "gt_voxels": 8613759,
4413
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.199975006921901879512837687266",
4414
+ "subset": "subset2",
4415
+ "failure_case": false
4416
+ },
4417
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.299767339686526858593516834230": {
4418
+ "dice": 0.9845552087539025,
4419
+ "iou": 0.9695802442845894,
4420
+ "f1": 0.9845552087539025,
4421
+ "precision": 0.9811785277483268,
4422
+ "recall": 0.9879552114061957,
4423
+ "sensitivity": 0.9879552114061957,
4424
+ "specificity": 0.9970134380427027,
4425
+ "hd95": 3.0,
4426
+ "vol_error": 0.006906677496725925,
4427
+ "tp": 5500165,
4428
+ "fp": 105507,
4429
+ "fn": 67056,
4430
+ "tn": 35221736,
4431
+ "pred_voxels": 5605672,
4432
+ "gt_voxels": 5567221,
4433
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.299767339686526858593516834230",
4434
+ "subset": "subset2",
4435
+ "failure_case": false
4436
+ },
4437
+ "1.3.6.1.4.1.14519.5.2.1.6279.6001.159521777966998275980367008904": {
4438
+ "dice": 0.9906237767435457,
4439
+ "iou": 0.9814217473318246,
4440
+ "f1": 0.9906237767435457,
4441
+ "precision": 0.9920317669051226,
4442
+ "recall": 0.9892197776368502,
4443
+ "sensitivity": 0.9892197776368502,
4444
+ "specificity": 0.9983803718321456,
4445
+ "hd95": 1.4142135623730951,
4446
+ "vol_error": 0.002834575829205231,
4447
+ "tp": 5576405,
4448
+ "fp": 44791,
4449
+ "fn": 60770,
4450
+ "tn": 27610322,
4451
+ "pred_voxels": 5621196,
4452
+ "gt_voxels": 5637175,
4453
+ "uid": "1.3.6.1.4.1.14519.5.2.1.6279.6001.159521777966998275980367008904",
4454
+ "subset": "subset2",
4455
+ "failure_case": false
4456
  }
4457
  }
4458
  }