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This dataset integrates Gene Ontology (GO) annotations (filtered to experimental evidence) with bibliographic data from Europe PMC
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Columns:
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DB, DB_Object_ID, DB_Object_Symbol: source database and gene/protein identifiers
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Qualifier: relationship qualifier (e.g., “NOT”, “contributes_to”)
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GO_ID, GO_Name: GO term and its descriptive name
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DB_Reference: supporting reference (PubMed or other)
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Evidence_Code: experimental evidence type (e.g., IDA)
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Aspect: ontology branch (P = process, F = function, C = component)
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DB_Object_Name, DB_Object_Synonym, DB_Object_Type: entity metadata
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Taxon: organism taxonomy ID
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Date, Assigned_By, Annotation_Extension: annotation metadata
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PMID: PubMed ID for the supporting publication
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Title, Abstract: publication title and abstract text (fetched from Europe PMC)
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## Dataset Description
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This dataset integrates **Gene Ontology (GO)** annotations (filtered to experimental evidence, IDA) with bibliographic data from **Europe PMC**.
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Each record links a biological entity (gene/protein) to a GO term and the supporting scientific publication (Title and Abstract).
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### **Columns**
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- **DB**, **DB_Object_ID**, **DB_Object_Symbol** — Source database and gene/protein identifiers
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- **Qualifier** — Relationship qualifier (e.g., `NOT`, `contributes_to`)
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- **GO_ID**, **GO_Name** — GO term and its descriptive name
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- **DB_Reference** — Supporting reference (PubMed or other)
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- **Evidence_Code** — Experimental evidence type (e.g., `IDA`)
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- **Aspect** — Ontology branch (`P` = process, `F` = function, `C` = component)
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- **DB_Object_Name**, **DB_Object_Synonym**, **DB_Object_Type** — Entity metadata
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- **Taxon** — Organism taxonomy ID
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- **Date**, **Assigned_By**, **Annotation_Extension** — Annotation metadata
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- **PMID** — PubMed ID for the supporting publication
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- **Title**, **Abstract** — Publication title and abstract text (fetched from Europe PMC)
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### **Summary**
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This dataset forms a structured link between curated **GO annotations** and **natural language descriptions** of the underlying biology — suitable for:
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- Biological reasoning
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- Text mining
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- Literature-grounded machine learning (ML) datasets
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