| [options] | |
| # Possible values for validate: | |
| # - all: perform full validation | |
| # - none: don't perform any validation | |
| Validation validate:all | |
| # Possible values for tokenizer | |
| # - ptblike: emulate Penn Treebank tokenization | |
| # - mecab: perform Japanese tokenization using MeCab | |
| # - whitespace: split by whitespace characters in source text (only) | |
| Tokens tokenizer:whitespace | |
| # Possible values for splitter: | |
| # - regex : regular expression-based sentence splitting | |
| # - newline: split by newline characters in source text (only) | |
| Sentences splitter:regex | |
| # Possible values for logfile: | |
| # - <NONE> : no annotation logging | |
| # - NAME : log into file NAME (e.g. "/home/brat/annotation.log") | |
| Annotation-log logfile:<NONE> | |
| [search] | |
| # Search option configuration. Configured queries will be available in | |
| # text span annotation dialogs. When selected on the UI, these open | |
| # the given URL ("<URL>") with the string "%s" replaced with the | |
| # selected text span. | |
| Google <URL>:http://www.google.com/search?q=%s | |
| Wikipedia <URL>:http://en.wikipedia.org/wiki/Special:Search?search=%s | |
| [annotators] | |
| # Automatic annotation service configuration. The values of "tool" and | |
| # "model" are required for the UI, and "<URL>" should be filled with | |
| # the URL of the web service. See the brat documentation for more | |
| # information. | |
| # Examples: | |
| # Random tool:Random, model:Random, <URL>:http://localhost:47111/ | |
| # Stanford-CoNLL-MUC tool:Stanford_NER, model:CoNLL+MUC, <URL>:http://127.0.0.1:47111/ | |
| # NERtagger-GENIA tool:NERtagger, model:GENIA, <URL>:http://example.com:8080/tagger/ | |
| [disambiguators] | |
| # Automatic semantic disambiguation service configuration. The values | |
| # of "tool" and "model" are required for the UI, and "<URL>" should be | |
| # filled with the URL of the web service. See the brat documentation | |
| # for more information. | |
| # Example: | |
| # simsem-GENIA tool:simsem, model:GENIA, <URL>:http://example.com:8080/tagger/%s | |
| [normalization] | |
| # Configuration for normalization against external resources. The | |
| # resource name (first field of each line) should match that of a | |
| # normalization DB on the brat server (see tools/norm_db_init.py), | |
| # "<URL>" should be filled with the URL of the resource (preferably | |
| # one providing a serach interface), and "<URLBASE>" should be a | |
| # string containing "%s" that, when replacing "%s" with an ID in | |
| # the external resource, becomes a link to a page representing | |
| # the entry corresponding to the ID in that resource. | |
| # Example | |
| #UniProt <URL>:http://www.uniprot.org/, <URLBASE>:http://www.uniprot.org/uniprot/%s | |
| #GO <URL>:http://www.geneontology.org/, <URLBASE>:http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:%s | |
| #FMA <URL>:http://fme.biostr.washington.edu/FME/index.html, <URLBASE>:http://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=FMA&termId=FMA:%s | |
| #Wikipedia <URL>:http://en.wikipedia.org, <URLBASE>:http://en.wikipedia.org/?curid=%s | |