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+stats/models/ada002/ada002_bestmatch_5085/Best_Match_Cosine_Ada_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/bge-m3/bge_bestmatch_5085/Best_Match_Cosine_bge-m3_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/large3/large3_5084_avg/avg_disease_embed_Large3_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/large3/large3_bestmatch_5085/Best_Match_Cosine_Large3_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/mxbai-l/mxbai_bestmatch_5085/Best_Match_Cosine_mxbai-l_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/nomic/nomic_bestmatch_5085/Best_Match_Cosine_nomic_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/small3/small3_bestmatch_5085/Best_Match_Cosine_small3_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/z_all_combined/avg/avg_all_combined_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/z_all_combined/bga/Best_Match_Cosine_small3_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text
+stats/models/z_all_combined/wgt/weighted-avg_all_combined_Elder_vs_Exomiser.db filter=lfs diff=lfs merge=lfs -text

stats/models/ada002/ada002_bestmatch_5085/Best_Match_Cosine_Ada_Elder_vs_Exomiser.db

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stats/models/bge-m3/bge_bestmatch_5085/Best_Match_Cosine_bge-m3_Elder_vs_Exomiser.db

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stats/models/large3/large3_5084_avg/avg_disease_embed_Large3_Elder_vs_Exomiser.db

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stats/models/mxbai-l/mxbai_bestmatch_5085/Best_Match_Cosine_mxbai-l_Elder_vs_Exomiser.db

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stats/models/nomic/nomic_bestmatch_5085/Best_Match_Cosine_nomic_Elder_vs_Exomiser.db

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stats/models/z_all_combined/avg/avg_all_combined_Elder_vs_Exomiser.db

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stats/models/z_all_combined/avg/benchmark.yaml

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+benchmark_name: avg_all_combined_Elder_vs_Exomiser
+runs:
+  - run_identifier: Exomiser
+    results_dir: /Users/ck/Desktop/db_run/exomiser_results_check/exomiser_cleaned_results
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: avg_ELDER_small3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/small3/small3_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: avg_ELDER_nomic
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/nomic/nomic_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: avg_ELDER_mxbai-l
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/mxbai-l/mxbai_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: avg_ELDER_large3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/large3/large3_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: avg_ELDER_bge-m3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/bge-m3/bgem3_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: avg_ELDER_ada002
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/ada002/ada_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+plot_customisation:
+  gene_plots:
+    plot_type: bar_cumulative
+    rank_plot_title:
+    roc_curve_title:
+    precision_recall_title:
+  variant_plots:
+    plot_type: bar_cumulative
+    rank_plot_title:
+    roc_curve_title:
+    precision_recall_title:
+  disease_plots:
+    plot_type: bar_cumulative
+    rank_plot_title: avg-ELDER vs Exomiser
+    roc_curve_title: avg-ELDER vs Exomiser
+    precision_recall_title: avg-ELDER vs Exomiser

stats/models/z_all_combined/bga/Best_Match_Cosine_small3_Elder_vs_Exomiser.db

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stats/models/z_all_combined/bga/benchmark.yaml

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+benchmark_name: Best_Match_Cosine_all_combined_Elder_vs_Exomiser
+runs:
+  - run_identifier: Exomiser
+    results_dir: /Users/ck/Desktop/db_run/exomiser_results_check/exomiser_cleaned_results
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: cosBMA_ELDER_small3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/small3/small3_bma_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: cosBMA_ELDER_nomic
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/nomic/nomic_bma_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: cosBMA_ELDER__mxbai-l
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/mxbai-l/mxbai_bma_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: cosBMA_ELDER_large3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/large3/large3_bma_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: cosBMA_ELDER_bge-m3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/bge-m3/bgem3_bma_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: cosBMA_ELDER_ada002
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/ada002/ada_bma_lrd_hpo_embeddings_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+plot_customisation:
+  gene_plots:
+    plot_type: bar_cumulative
+    rank_plot_title:
+    roc_curve_title:
+    precision_recall_title:
+  variant_plots:
+    plot_type: bar_cumulative
+    rank_plot_title:
+    roc_curve_title:
+    precision_recall_title:
+  disease_plots:
+    plot_type: bar_cumulative
+    rank_plot_title: cosBMA-ELDER vs Exomiser
+    roc_curve_title: cosBMA-ELDER vs Exomiser
+    precision_recall_title: cosBMA-ELDER vs Exomiser

stats/models/z_all_combined/wgt/benchmark.yaml

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+benchmark_name: weighted-avg_all_combined_Elder_vs_Exomiser
+runs:
+  - run_identifier: Exomiser
+    results_dir: /Users/ck/Desktop/db_run/exomiser_results_check/exomiser_cleaned_results
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: weighted-avg_ELDER_small3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/small3/small3_wgt_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: weighted-avg_ELDER_nomic
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/nomic/nomic_wgt_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: weighted-avg_ELDER__mxbai-l
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/mxbai-l/mxbai_wgt_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: weighted-avg_ELDER_large3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/large3/large3_wgt_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: weighted-avg_ELDER_bge-m3
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/bge-m3/bgem3_wgt_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+  - run_identifier: weighted-avg_ELDER_ada002
+    results_dir: /Users/ck/Monarch/elder/stats_ressources/models/ada002/ada_wgt_avg_lrd_hpo_emb_5084pp_top10
+    phenopacket_dir: /Users/ck/Monarch/elder/5084_phenopackets
+    gene_analysis: False
+    variant_analysis: False
+    disease_analysis: True
+    threshold:
+    score_order: descending
+plot_customisation:
+  gene_plots:
+    plot_type: bar_cumulative
+    rank_plot_title:
+    roc_curve_title:
+    precision_recall_title:
+  variant_plots:
+    plot_type: bar_cumulative
+    rank_plot_title:
+    roc_curve_title:
+    precision_recall_title:
+  disease_plots:
+    plot_type: bar_cumulative
+    rank_plot_title: weighted-avg-ELDER vs Exomiser
+    roc_curve_title: weighted-avg-ELDER vs Exomiser
+    precision_recall_title: weighted-avg-ELDER vs Exomiser

stats/models/z_all_combined/wgt/weighted-avg_all_combined_Elder_vs_Exomiser.db

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