from __future__ import annotations from typing import List, Optional from pydantic import BaseModel, Field, ValidationError, model_validator class Reagent(BaseModel): name: str amount: Optional[float] = Field(default=None, description="Numeric amount if known") unit: Optional[str] = Field(default=None, description="Unit for amount, e.g., µL, mg, mM") vendor: Optional[str] = None catalog_number: Optional[str] = None class Step(BaseModel): number: int description: str duration_minutes: Optional[float] = None temperature_c: Optional[float] = None hazards: List[str] = [] class Protocol(BaseModel): title: str sources: List[str] equipment: List[str] = [] reagents: List[Reagent] = [] steps: List[Step] safety_notes: List[str] = [] ruo_disclaimer: str @model_validator(mode="after") def check_steps_sequential(self): nums = [s.number for s in self.steps] if nums != list(range(1, len(nums) + 1)): raise ValueError("Steps must be sequential starting at 1") return self def validate_protocol(proto: Protocol) -> None: """Raises ValidationError if invalid.""" if not proto.ruo_disclaimer.lower().startswith("research use only"): raise ValidationError([{"loc":("ruo_disclaimer",), "msg":"Missing RUO disclaimer"}], Protocol)