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  1. NOTICE +47 -27
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@@ -5,39 +5,59 @@ This dataset redistributes ONLY extracted numeric data (IR band lists, 1H/13C sh
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  lists, and resolved structures as SMILES/SELFIES/InChIKey) together with each record's
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  source DOI/accession. No source full text, figures, or PDFs are redistributed.
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- Two separable, individually-labelled source pools
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- -------------------------------------------------
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- 1. PMC Open-Access Subset — 119,345 records — CC-BY-4.0
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- https://www.ncbi.nlm.nih.gov/pmc/tools/openftlist/
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- 2. Chemotion RADAR4Chem FT-IR deposit — 1,888 records — CC-BY-SA-4.0
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- DOI 10.22000/OGoEQGlsZGElrgst (VERIFY this DOI resolves before release)
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-
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- The pools are separable losslessly from the released file itself, so downstream users can
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- take the CC-BY pool alone where the ShareAlike obligation is unwanted. The discriminator
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- is each record's `source_doi`: Chemotion records carry the RADAR4Chem DOI prefix 10.22000,
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- PMC records carry a PMC: accession. The released records do NOT carry a separate
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- `license` column; run
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-
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- python scripts/split_license_pools.py --write OUT/
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-
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- to materialise irexp_pmc.jsonl.gz (CC-BY-4.0) and irexp_chemotion.jsonl.gz
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- (CC-BY-SA-4.0), each record stamped with its licence. Any combined or Chemotion-derived
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- redistribution must be released under CC-BY-SA-4.0 (the more restrictive compatible
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- licence).
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  Attribution
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  -----------
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  Re-users must (a) cite the dataset via its archival Zenodo DOI (see PAPER.md
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- "Data and code availability"), and (b) attribute the originating publications via each
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- record's `source_doi` field, per CC-BY / CC-BY-SA.
 
 
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  Code
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  ----
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  The code in this repository is released under the MIT License (see top-level LICENSE).
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- TODO before public release
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- --------------------------
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- - Either add a per-record `licence` field, or ship the two pools as physically separate
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- files (e.g. irexp_pmc_ccby.jsonl.gz / irexp_chemotion_ccbysa.jsonl.gz) so the
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- "separable pools" claim is literally true on disk.
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- - Confirm the Chemotion/RADAR4Chem DOI resolves.
 
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  lists, and resolved structures as SMILES/SELFIES/InChIKey) together with each record's
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  source DOI/accession. No source full text, figures, or PDFs are redistributed.
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+ Every record carries stamped licence fields
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+ -------------------------------------------
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+ After `scripts/join_pmc_licences.py` (Europe PMC join, 2026-08-26):
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+
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+ | Field | Meaning |
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+ |---|---|
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+ | `license` | Normalised label (CC-BY, CC-BY-NC*, CC0, CC-BY-SA-4.0, EMPTY, UNKNOWN, …) |
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+ | `license_raw` | Europe PMC `license` string (PMC rows) or Chemotion landing-page term |
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+ | `license_pool` | `commercial` \| `non_commercial` \| `sharealike` \| `empty_unknown` \| `other` |
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+ | `license_source` | `europepmc` \| `chemotion` |
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+ | `pmcid` | Normalised PMCID when source is PMC |
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+
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+ Full corpus: `data/irexp/irexp.jsonl.gz` (121,233 records) — **kept on disk with
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+ per-record licence**; filter at release time.
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+
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+ Licence pools (record counts)
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+ -----------------------------
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+ | Pool | Records | Redistribution policy |
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+ |---|---:|---|
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+ | **commercial** (CC0 + CC-BY) | **87,617** | Primary Sci Data / Zenodo redistributable artifact |
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+ | non_commercial (CC-BY-NC*) | 20,938 | Held aside — `licence_pools/irexp_non_commercial.jsonl.gz` |
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+ | sharealike (Chemotion CC-BY-SA-4.0 + rare PMC CC-BY-SA) | 1,897 | Separate SA file — honour ShareAlike |
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+ | empty_unknown (EMPTY / no EPMC hit) | 10,781 | **Excluded** from commercial Zenodo pool |
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+ | other (e.g. CC-BY-ND) | 0 | Held aside if present |
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+
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+ Provenance (unchanged totals): PMC-sourced 119,345; Chemotion 1,888.
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+ Unique PMCIDs joined: 15,416. See `docs/scientific_data/LICENCE_REMEDIATION.md`.
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+
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+ Materialise pools
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+ -----------------
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+ ```
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+ python scripts/join_pmc_licences.py # (re)join + stamp + write licence_pools/
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+ python scripts/split_license_pools.py # report
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+ python scripts/split_license_pools.py --write OUT/ # by license_pool
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+ python scripts/split_license_pools.py --write-sources OUT/ # pmc vs chemotion only
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+ ```
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+
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+ Pre-built files live under `data/irexp/licence_pools/`.
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  Attribution
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  -----------
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  Re-users must (a) cite the dataset via its archival Zenodo DOI (see PAPER.md
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+ "Data and code availability"), (b) attribute originating publications via each
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+ record's `source_doi` / `pmcid`, and (c) honour each record's `license` /
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+ `license_pool`. Commercial ML redistribution should use the **commercial** pool
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+ only. Chemotion-derived or mixed-SA redistributions must remain CC-BY-SA-4.0.
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  Code
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  ----
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  The code in this repository is released under the MIT License (see top-level LICENSE).
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+ Hugging Face
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+ ------------
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+ The public mirror `ilkhamfy/IRexp` previously overclaimed blanket CC-BY for PMC rows.
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+ Re-issue after remediation see `docs/scientific_data/LICENCE_REMEDIATION.md` § HF
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+ re-upload. No credentials are committed here.