Add NOTICE
Browse files
NOTICE
CHANGED
|
@@ -5,39 +5,59 @@ This dataset redistributes ONLY extracted numeric data (IR band lists, 1H/13C sh
|
|
| 5 |
lists, and resolved structures as SMILES/SELFIES/InChIKey) together with each record's
|
| 6 |
source DOI/accession. No source full text, figures, or PDFs are redistributed.
|
| 7 |
|
| 8 |
-
|
| 9 |
-
-------------------------------------------
|
| 10 |
-
|
| 11 |
-
|
| 12 |
-
|
| 13 |
-
|
| 14 |
-
|
| 15 |
-
|
| 16 |
-
|
| 17 |
-
|
| 18 |
-
|
| 19 |
-
|
| 20 |
-
|
| 21 |
-
|
| 22 |
-
|
| 23 |
-
|
| 24 |
-
|
| 25 |
-
|
| 26 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 27 |
|
| 28 |
Attribution
|
| 29 |
-----------
|
| 30 |
Re-users must (a) cite the dataset via its archival Zenodo DOI (see PAPER.md
|
| 31 |
-
"Data and code availability"),
|
| 32 |
-
record's `source_doi`
|
|
|
|
|
|
|
| 33 |
|
| 34 |
Code
|
| 35 |
----
|
| 36 |
The code in this repository is released under the MIT License (see top-level LICENSE).
|
| 37 |
|
| 38 |
-
|
| 39 |
-
------------
|
| 40 |
-
|
| 41 |
-
|
| 42 |
-
|
| 43 |
-
- Confirm the Chemotion/RADAR4Chem DOI resolves.
|
|
|
|
| 5 |
lists, and resolved structures as SMILES/SELFIES/InChIKey) together with each record's
|
| 6 |
source DOI/accession. No source full text, figures, or PDFs are redistributed.
|
| 7 |
|
| 8 |
+
Every record carries stamped licence fields
|
| 9 |
+
-------------------------------------------
|
| 10 |
+
After `scripts/join_pmc_licences.py` (Europe PMC join, 2026-08-26):
|
| 11 |
+
|
| 12 |
+
| Field | Meaning |
|
| 13 |
+
|---|---|
|
| 14 |
+
| `license` | Normalised label (CC-BY, CC-BY-NC*, CC0, CC-BY-SA-4.0, EMPTY, UNKNOWN, …) |
|
| 15 |
+
| `license_raw` | Europe PMC `license` string (PMC rows) or Chemotion landing-page term |
|
| 16 |
+
| `license_pool` | `commercial` \| `non_commercial` \| `sharealike` \| `empty_unknown` \| `other` |
|
| 17 |
+
| `license_source` | `europepmc` \| `chemotion` |
|
| 18 |
+
| `pmcid` | Normalised PMCID when source is PMC |
|
| 19 |
+
|
| 20 |
+
Full corpus: `data/irexp/irexp.jsonl.gz` (121,233 records) — **kept on disk with
|
| 21 |
+
per-record licence**; filter at release time.
|
| 22 |
+
|
| 23 |
+
Licence pools (record counts)
|
| 24 |
+
-----------------------------
|
| 25 |
+
| Pool | Records | Redistribution policy |
|
| 26 |
+
|---|---:|---|
|
| 27 |
+
| **commercial** (CC0 + CC-BY) | **87,617** | Primary Sci Data / Zenodo redistributable artifact |
|
| 28 |
+
| non_commercial (CC-BY-NC*) | 20,938 | Held aside — `licence_pools/irexp_non_commercial.jsonl.gz` |
|
| 29 |
+
| sharealike (Chemotion CC-BY-SA-4.0 + rare PMC CC-BY-SA) | 1,897 | Separate SA file — honour ShareAlike |
|
| 30 |
+
| empty_unknown (EMPTY / no EPMC hit) | 10,781 | **Excluded** from commercial Zenodo pool |
|
| 31 |
+
| other (e.g. CC-BY-ND) | 0 | Held aside if present |
|
| 32 |
+
|
| 33 |
+
Provenance (unchanged totals): PMC-sourced 119,345; Chemotion 1,888.
|
| 34 |
+
Unique PMCIDs joined: 15,416. See `docs/scientific_data/LICENCE_REMEDIATION.md`.
|
| 35 |
+
|
| 36 |
+
Materialise pools
|
| 37 |
+
-----------------
|
| 38 |
+
```
|
| 39 |
+
python scripts/join_pmc_licences.py # (re)join + stamp + write licence_pools/
|
| 40 |
+
python scripts/split_license_pools.py # report
|
| 41 |
+
python scripts/split_license_pools.py --write OUT/ # by license_pool
|
| 42 |
+
python scripts/split_license_pools.py --write-sources OUT/ # pmc vs chemotion only
|
| 43 |
+
```
|
| 44 |
+
|
| 45 |
+
Pre-built files live under `data/irexp/licence_pools/`.
|
| 46 |
|
| 47 |
Attribution
|
| 48 |
-----------
|
| 49 |
Re-users must (a) cite the dataset via its archival Zenodo DOI (see PAPER.md
|
| 50 |
+
"Data and code availability"), (b) attribute originating publications via each
|
| 51 |
+
record's `source_doi` / `pmcid`, and (c) honour each record's `license` /
|
| 52 |
+
`license_pool`. Commercial ML redistribution should use the **commercial** pool
|
| 53 |
+
only. Chemotion-derived or mixed-SA redistributions must remain CC-BY-SA-4.0.
|
| 54 |
|
| 55 |
Code
|
| 56 |
----
|
| 57 |
The code in this repository is released under the MIT License (see top-level LICENSE).
|
| 58 |
|
| 59 |
+
Hugging Face
|
| 60 |
+
------------
|
| 61 |
+
The public mirror `ilkhamfy/IRexp` previously overclaimed blanket CC-BY for PMC rows.
|
| 62 |
+
Re-issue after remediation — see `docs/scientific_data/LICENCE_REMEDIATION.md` § HF
|
| 63 |
+
re-upload. No credentials are committed here.
|
|
|