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  pretty_name: ProteinFamilyClassification
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  size_categories:
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  - 1K<n<10K
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- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  pretty_name: ProteinFamilyClassification
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  size_categories:
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  - 1K<n<10K
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+ ---
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+ ## Dataset Description
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+ This dataset contains a curated subset (14% of the original) of protein sequences from the **Astral SCOPe 2.08 genetic domain sequence subsets**.
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+ It is designed for **protein family classification** tasks, where the goal is to assign each amino acid sequence to its corresponding **SCOPe family**.
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+
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+ ### Key Features
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+ - **Source:** Derived from the SCOPe database, which provides a hierarchical classification of protein structural domains based on experimental structural data from the Protein Data Bank (PDB).
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+ - **Classes:** Seven SCOPe protein classes (a–g), covering alpha proteins, beta proteins, mixed alpha/beta proteins, multi-domain proteins, membrane proteins, and small proteins.
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+ - **Embeddings:** Precomputed embeddings generated using the **ESM-2 transformer model** from Meta AI, allowing researchers to skip the computationally expensive embedding step.
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+ - **Purpose:** Ideal for training and testing classification models on protein sequence data with minimal preprocessing.
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+
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+ ### Why This Dataset?
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+ Generating embeddings for the full dataset takes ~3-7 hours on typical hardware. This preprocessed version provides a ready-to-use format for quick experimentation, making it accessible to teams with limited compute resources.
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+
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+ ### Potential Uses
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+ - Benchmarking machine learning models for protein classification.
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+ - Experimenting with XGBoost, MLP, CNN, or other classifiers.
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+ - Teaching and demonstration purposes in bioinformatics and computational biology.
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+ ---