Datasets:
Add CSV and update configs and description for viewer
Browse files- BeetleMeasurements_resized.csv +578 -0
- README.md +3 -0
BeetleMeasurements_resized.csv
ADDED
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@@ -0,0 +1,578 @@
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| 1 |
+
pictureID,file_name
|
| 2 |
+
A00000046175.jpg,beetle_images_resized/A00000046175.jpg
|
| 3 |
+
A00000022197.jpg,beetle_images_resized/A00000022197.jpg
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| 4 |
+
A00000051179.jpg,beetle_images_resized/A00000051179.jpg
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| 5 |
+
A00000040712.jpg,beetle_images_resized/A00000040712.jpg
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| 6 |
+
A00000041430.jpg,beetle_images_resized/A00000041430.jpg
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| 7 |
+
A00000051623.jpg,beetle_images_resized/A00000051623.jpg
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| 8 |
+
A00000051186.jpg,beetle_images_resized/A00000051186.jpg
|
| 9 |
+
A00000041381.jpg,beetle_images_resized/A00000041381.jpg
|
| 10 |
+
A00000033688.jpg,beetle_images_resized/A00000033688.jpg
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| 11 |
+
MLBS_088.W.20180814.PTELAC2.jpg,beetle_images_resized/MLBS_088.W.20180814.PTELAC2.jpg
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| 12 |
+
A00000040699.jpg,beetle_images_resized/A00000040699.jpg
|
| 13 |
+
A00000051541.jpg,beetle_images_resized/A00000051541.jpg
|
| 14 |
+
A00000051596.jpg,beetle_images_resized/A00000051596.jpg
|
| 15 |
+
BART_002.S.20180712.SYNIMP.01.jpg,beetle_images_resized/BART_002.S.20180712.SYNIMP.01.jpg
|
| 16 |
+
A00000051582.jpg,beetle_images_resized/A00000051582.jpg
|
| 17 |
+
A00000051583.jpg,beetle_images_resized/A00000051583.jpg
|
| 18 |
+
A00000051597.jpg,beetle_images_resized/A00000051597.jpg
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| 19 |
+
A00000051540.jpg,beetle_images_resized/A00000051540.jpg
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| 20 |
+
A00000051554.jpg,beetle_images_resized/A00000051554.jpg
|
| 21 |
+
BART_081.S.20180809.SYNIMP.01.jpg,beetle_images_resized/BART_081.S.20180809.SYNIMP.01.jpg
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| 22 |
+
A00000055530.jpg,beetle_images_resized/A00000055530.jpg
|
| 23 |
+
A00000033689.jpg,beetle_images_resized/A00000033689.jpg
|
| 24 |
+
BART_079.W.20180627.AGORET.01.jpg,beetle_images_resized/BART_079.W.20180627.AGORET.01.jpg
|
| 25 |
+
A00000051187.jpg,beetle_images_resized/A00000051187.jpg
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| 26 |
+
A00000051622.jpg,beetle_images_resized/A00000051622.jpg
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| 27 |
+
A00000041431.jpg,beetle_images_resized/A00000041431.jpg
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| 28 |
+
A00000041419.jpg,beetle_images_resized/A00000041419.jpg
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| 29 |
+
A00000051178.jpg,beetle_images_resized/A00000051178.jpg
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| 30 |
+
A00000040713.jpg,beetle_images_resized/A00000040713.jpg
|
| 31 |
+
A00000034535.jpg,beetle_images_resized/A00000034535.jpg
|
| 32 |
+
A00000046174.jpg,beetle_images_resized/A00000046174.jpg
|
| 33 |
+
A00000046176.jpg,beetle_images_resized/A00000046176.jpg
|
| 34 |
+
A00000034537.jpg,beetle_images_resized/A00000034537.jpg
|
| 35 |
+
A00000051608.jpg,beetle_images_resized/A00000051608.jpg
|
| 36 |
+
A00000041433.jpg,beetle_images_resized/A00000041433.jpg
|
| 37 |
+
A00000051620.jpg,beetle_images_resized/A00000051620.jpg
|
| 38 |
+
HARV_008.W.20180814.PTEROS.01.jpg,beetle_images_resized/HARV_008.W.20180814.PTEROS.01.jpg
|
| 39 |
+
A00000051185.jpg,beetle_images_resized/A00000051185.jpg
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| 40 |
+
A00000041396.jpg,beetle_images_resized/A00000041396.jpg
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| 41 |
+
A00000046228.jpg,beetle_images_resized/A00000046228.jpg
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| 42 |
+
A00000033674.jpg,beetle_images_resized/A00000033674.jpg
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| 43 |
+
A00000051542.jpg,beetle_images_resized/A00000051542.jpg
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| 44 |
+
A00000051556.jpg,beetle_images_resized/A00000051556.jpg
|
| 45 |
+
BART_018.W.20180712.SYNIMP.01.jpg,beetle_images_resized/BART_018.W.20180712.SYNIMP.01.jpg
|
| 46 |
+
A00000051581.jpg,beetle_images_resized/A00000051581.jpg
|
| 47 |
+
A00000051595.jpg,beetle_images_resized/A00000051595.jpg
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| 48 |
+
A00000051580.jpg,beetle_images_resized/A00000051580.jpg
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| 49 |
+
A00000051557.jpg,beetle_images_resized/A00000051557.jpg
|
| 50 |
+
A00000051543.jpg,beetle_images_resized/A00000051543.jpg
|
| 51 |
+
A00000043621.jpg,beetle_images_resized/A00000043621.jpg
|
| 52 |
+
A00000033675.jpg,beetle_images_resized/A00000033675.jpg
|
| 53 |
+
A00000046229.jpg,beetle_images_resized/A00000046229.jpg
|
| 54 |
+
A00000051184.jpg,beetle_images_resized/A00000051184.jpg
|
| 55 |
+
A00000041383.jpg,beetle_images_resized/A00000041383.jpg
|
| 56 |
+
A00000051190.jpg,beetle_images_resized/A00000051190.jpg
|
| 57 |
+
A00000051621.jpg,beetle_images_resized/A00000051621.jpg
|
| 58 |
+
A00000051609.jpg,beetle_images_resized/A00000051609.jpg
|
| 59 |
+
A00000051386.jpg,beetle_images_resized/A00000051386.jpg
|
| 60 |
+
A00000034536.jpg,beetle_images_resized/A00000034536.jpg
|
| 61 |
+
RMNP_016.E.20180709.PTEPROZ.01(13).jpg,beetle_images_resized/RMNP_016.E.20180709.PTEPROZ.01(13).jpg
|
| 62 |
+
A00000046177.jpg,beetle_images_resized/A00000046177.jpg
|
| 63 |
+
BART_080.E.20180905.PTEPEN.01.jpg,beetle_images_resized/BART_080.E.20180905.PTEPEN.01.jpg
|
| 64 |
+
A00000046173.jpg,beetle_images_resized/A00000046173.jpg
|
| 65 |
+
A00000041422.jpg,beetle_images_resized/A00000041422.jpg
|
| 66 |
+
A00000051625.jpg,beetle_images_resized/A00000051625.jpg
|
| 67 |
+
A00000041436.jpg,beetle_images_resized/A00000041436.jpg
|
| 68 |
+
A00000040728.jpg,beetle_images_resized/A00000040728.jpg
|
| 69 |
+
A00000044566.jpg,beetle_images_resized/A00000044566.jpg
|
| 70 |
+
A00000051619.jpg,beetle_images_resized/A00000051619.jpg
|
| 71 |
+
A00000051180.jpg,beetle_images_resized/A00000051180.jpg
|
| 72 |
+
A00000022146.jpg,beetle_images_resized/A00000022146.jpg
|
| 73 |
+
A00000033671.jpg,beetle_images_resized/A00000033671.jpg
|
| 74 |
+
A00000051547.jpg,beetle_images_resized/A00000051547.jpg
|
| 75 |
+
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A00000046185.jpg,beetle_images_resized/A00000046185.jpg
|
| 510 |
+
A00000051610.jpg,beetle_images_resized/A00000051610.jpg
|
| 511 |
+
A00000041403.jpg,beetle_images_resized/A00000041403.jpg
|
| 512 |
+
A00000051176.jpg,beetle_images_resized/A00000051176.jpg
|
| 513 |
+
A00000051162.jpg,beetle_images_resized/A00000051162.jpg
|
| 514 |
+
A00000051604.jpg,beetle_images_resized/A00000051604.jpg
|
| 515 |
+
BART_066.W.20180822.CYMCRI.01.jpg,beetle_images_resized/BART_066.W.20180822.CYMCRI.01.jpg
|
| 516 |
+
A00000008981.jpg,beetle_images_resized/A00000008981.jpg
|
| 517 |
+
A00000051189.jpg,beetle_images_resized/A00000051189.jpg
|
| 518 |
+
A00000033687.jpg,beetle_images_resized/A00000033687.jpg
|
| 519 |
+
MLBS_002.W.20180522.CARGOR(32).jpg,beetle_images_resized/MLBS_002.W.20180522.CARGOR(32).jpg
|
| 520 |
+
A00000046224.jpg,beetle_images_resized/A00000046224.jpg
|
| 521 |
+
A00000040696.jpg,beetle_images_resized/A00000040696.jpg
|
| 522 |
+
MOAB_001.W.20180724.CICPUN.01.jpg,beetle_images_resized/MOAB_001.W.20180724.CICPUN.01.jpg
|
| 523 |
+
TALL_003.S.20180725.TETCAR.01.jpg,beetle_images_resized/TALL_003.S.20180725.TETCAR.01.jpg
|
| 524 |
+
A00000043638.jpg,beetle_images_resized/A00000043638.jpg
|
| 525 |
+
A00000051599.jpg,beetle_images_resized/A00000051599.jpg
|
| 526 |
+
GRSM_020.20180417.CARGOR.01.jpg,beetle_images_resized/GRSM_020.20180417.CARGOR.01.jpg
|
| 527 |
+
A00000051598.jpg,beetle_images_resized/A00000051598.jpg
|
| 528 |
+
A00000040683.jpg,beetle_images_resized/A00000040683.jpg
|
| 529 |
+
A00000033651.jpg,beetle_images_resized/A00000033651.jpg
|
| 530 |
+
A00000046225.jpg,beetle_images_resized/A00000046225.jpg
|
| 531 |
+
A00000033692.jpg,beetle_images_resized/A00000033692.jpg
|
| 532 |
+
A00000033686.jpg,beetle_images_resized/A00000033686.jpg
|
| 533 |
+
A00000051188.jpg,beetle_images_resized/A00000051188.jpg
|
| 534 |
+
A00000008980.jpg,beetle_images_resized/A00000008980.jpg
|
| 535 |
+
A00000040720.jpg,beetle_images_resized/A00000040720.jpg
|
| 536 |
+
A00000051163.jpg,beetle_images_resized/A00000051163.jpg
|
| 537 |
+
A00000041416.jpg,beetle_images_resized/A00000041416.jpg
|
| 538 |
+
A00000051605.jpg,beetle_images_resized/A00000051605.jpg
|
| 539 |
+
A00000041402.jpg,beetle_images_resized/A00000041402.jpg
|
| 540 |
+
A00000051611.jpg,beetle_images_resized/A00000051611.jpg
|
| 541 |
+
A00000051177.jpg,beetle_images_resized/A00000051177.jpg
|
| 542 |
+
A00000046184.jpg,beetle_images_resized/A00000046184.jpg
|
| 543 |
+
A00000046179.jpg,beetle_images_resized/A00000046179.jpg
|
| 544 |
+
A00000050041.jpg,beetle_images_resized/A00000050041.jpg
|
| 545 |
+
A00000034538.jpg,beetle_images_resized/A00000034538.jpg
|
| 546 |
+
A00000046186.jpg,beetle_images_resized/A00000046186.jpg
|
| 547 |
+
A00000051607.jpg,beetle_images_resized/A00000051607.jpg
|
| 548 |
+
A00000041414.jpg,beetle_images_resized/A00000041414.jpg
|
| 549 |
+
A00000051161.jpg,beetle_images_resized/A00000051161.jpg
|
| 550 |
+
A00000051175.jpg,beetle_images_resized/A00000051175.jpg
|
| 551 |
+
A00000051613.jpg,beetle_images_resized/A00000051613.jpg
|
| 552 |
+
A00000040722.jpg,beetle_images_resized/A00000040722.jpg
|
| 553 |
+
A00000041399.jpg,beetle_images_resized/A00000041399.jpg
|
| 554 |
+
A00000033690.jpg,beetle_images_resized/A00000033690.jpg
|
| 555 |
+
A00000046227.jpg,beetle_images_resized/A00000046227.jpg
|
| 556 |
+
A00000033653.jpg,beetle_images_resized/A00000033653.jpg
|
| 557 |
+
MLBS_002.E.20180522.CARABID.D.CARGOR(30).jpg,beetle_images_resized/MLBS_002.E.20180522.CARABID.D.CARGOR(30).jpg
|
| 558 |
+
A00000040695.jpg,beetle_images_resized/A00000040695.jpg
|
| 559 |
+
A00000051559.jpg,beetle_images_resized/A00000051559.jpg
|
| 560 |
+
A00000009083.jpg,beetle_images_resized/A00000009083.jpg
|
| 561 |
+
HARV_005.E.20180619.SYNIMP.01.jpg,beetle_images_resized/HARV_005.E.20180619.SYNIMP.01.jpg
|
| 562 |
+
A00000137178.jpg,beetle_images_resized/A00000137178.jpg
|
| 563 |
+
A00000032996.jpg,beetle_images_resized/A00000032996.jpg
|
| 564 |
+
A00000051558.jpg,beetle_images_resized/A00000051558.jpg
|
| 565 |
+
A00000033652.jpg,beetle_images_resized/A00000033652.jpg
|
| 566 |
+
A00000046226.jpg,beetle_images_resized/A00000046226.jpg
|
| 567 |
+
A00000033685.jpg,beetle_images_resized/A00000033685.jpg
|
| 568 |
+
A00000033691.jpg,beetle_images_resized/A00000033691.jpg
|
| 569 |
+
A00000012924.jpg,beetle_images_resized/A00000012924.jpg
|
| 570 |
+
A00000040723.jpg,beetle_images_resized/A00000040723.jpg
|
| 571 |
+
A00000051174.jpg,beetle_images_resized/A00000051174.jpg
|
| 572 |
+
A00000051612.jpg,beetle_images_resized/A00000051612.jpg
|
| 573 |
+
A00000051606.jpg,beetle_images_resized/A00000051606.jpg
|
| 574 |
+
A00000046187.jpg,beetle_images_resized/A00000046187.jpg
|
| 575 |
+
A00000034539.jpg,beetle_images_resized/A00000034539.jpg
|
| 576 |
+
A00000050040.jpg,beetle_images_resized/A00000050040.jpg
|
| 577 |
+
A00000003356.jpg,beetle_images_resized/A00000003356.jpg
|
| 578 |
+
A00000046178.jpg,beetle_images_resized/A00000046178.jpg
|
README.md
CHANGED
|
@@ -26,6 +26,7 @@ configs:
|
|
| 26 |
- "group_images/*.jpg"
|
| 27 |
- config_name: resized_images
|
| 28 |
data_files:
|
|
|
|
| 29 |
- "beetle_images_resized/*.jpg"
|
| 30 |
---
|
| 31 |
<!-- - config_name: individual_images
|
|
@@ -92,6 +93,7 @@ The `individual_images` directory contains images of each individual segmented f
|
|
| 92 |
...
|
| 93 |
<individualID 11459>.jpg
|
| 94 |
BeetleMeasurements.csv
|
|
|
|
| 95 |
individual_metadata.csv
|
| 96 |
```
|
| 97 |
|
|
@@ -139,6 +141,7 @@ Segmentation was completed by adapting the elytra length and width annotations t
|
|
| 139 |
- The `NEON_sampleID` RMNP_014.20180709.CALADV.01 is repeated because there were too many individuals in the sample to organize them all in one picture. Thus, the individuals from this sample are split between two pictures: `A00000051555_1` and `A00000051555_2`.
|
| 140 |
- The `NEON_sampleID` MOAB_001.S.20180724 was provided without scientific name identification.
|
| 141 |
- See notebooks in the [Beetle Processing Repository](https://github.com/Imageomics/2018-NEON-beetles-processing) for more information and analyses of these values, addition and renaming of the above columns from the [original measurement CSV](https://huggingface.co/datasets/imageomics/2018-NEON-beetles/blob/bbefad05d50ed55da82e99bd330afe12a5fd1d97/BeetleMeasurements.csv), and the creation of the individual metadata CSV.
|
|
|
|
| 142 |
|
| 143 |
**TODO:* Make individual metadata CSV file:
|
| 144 |
|
|
|
|
| 26 |
- "group_images/*.jpg"
|
| 27 |
- config_name: resized_images
|
| 28 |
data_files:
|
| 29 |
+
- "BeetleMeasurements_resized.csv"
|
| 30 |
- "beetle_images_resized/*.jpg"
|
| 31 |
---
|
| 32 |
<!-- - config_name: individual_images
|
|
|
|
| 93 |
...
|
| 94 |
<individualID 11459>.jpg
|
| 95 |
BeetleMeasurements.csv
|
| 96 |
+
BeetleMeasurements_resized.csv
|
| 97 |
individual_metadata.csv
|
| 98 |
```
|
| 99 |
|
|
|
|
| 141 |
- The `NEON_sampleID` RMNP_014.20180709.CALADV.01 is repeated because there were too many individuals in the sample to organize them all in one picture. Thus, the individuals from this sample are split between two pictures: `A00000051555_1` and `A00000051555_2`.
|
| 142 |
- The `NEON_sampleID` MOAB_001.S.20180724 was provided without scientific name identification.
|
| 143 |
- See notebooks in the [Beetle Processing Repository](https://github.com/Imageomics/2018-NEON-beetles-processing) for more information and analyses of these values, addition and renaming of the above columns from the [original measurement CSV](https://huggingface.co/datasets/imageomics/2018-NEON-beetles/blob/bbefad05d50ed55da82e99bd330afe12a5fd1d97/BeetleMeasurements.csv), and the creation of the individual metadata CSV.
|
| 144 |
+
- `BeetleMeasurements_resized.csv` has just `pictureID` and `file_name` columns to display the resized images in the dataset viewer. It will match up to information from `BeetleMeasurments.csv` on `pictureID`, though this is _not_ a unique alignment since it's not a unique ID for `BeetleMeasurements.csv`, but is for the resize.
|
| 145 |
|
| 146 |
**TODO:* Make individual metadata CSV file:
|
| 147 |
|