updated readme

README.md

@@ -24,14 +24,10 @@ configs:
   data_files:
   - "group_images/metadata.csv"
   - "group_images/*.jpg"
-- config_name: group_images_masks
-  data_files:
-  - "group_images_masks/metadata.csv"
-  - "group_images_masks/*.png"
 - config_name: resized_images
   data_files:
-  - "beetle_images_resized/metadata.csv"
-  - "beetle_images_resized/*.jpg"
+  - "group_images_resized/metadata.csv"
+  - "group_images_resized/*.jpg"
 - config_name: "separate segmented splits"
   data_files:
   - "Separate_segmented_train_test_splits_80_20/*/*/*.jpg"
@@ -99,13 +95,7 @@ The `individual_images` directory contains images of each individual segmented f
         ...
         <pictureID 577>.jpg
         metadata.csv
-    group_images_masks/
-        <pictureID 1>_masks.jpg
-        <pictureID 2>_masks.jpg
-        ...
-        <pictureID 577>_masks.jpg
-        metadata.csv
-    beetle_images_resized/
+    group_images_resized/
         <pictureID 1>.jpg
         <pictureID 2>.jpg
         ...
@@ -191,19 +181,6 @@ Segmentation was completed by adapting the elytra length and width annotations t
   - `file_name`: path to the image from the `Separate_segmented_train_test_splits_80_20` folder to display in the dataset viewer.
   - `subset`: label given to this subset of the full image dataset (as selected in the viewer): `separate segmented splits`.
 
-**individual_metadata.csv**: This CSV was created for individual images that have not yet been added to this repository.
-  - `individualID`: ID of beetle in the individual image (`<measureID_length>_<measureID_width>`). This is a unique identifier for this CSV.
-  - `combinedID`: Generated from `PictureID` (minus the `.jpg`) plus `_<individual>`. (Matches `combinedID` in `BeetleMeasurements.csv`.)
-  - `lying_flat`: Whether or not the beetle is lying _flat_ in the image (`Yes` or `No`). This does _NOT_ correlate to vertical or horizontal alignment; it is whether the individual is twisted to one side or not--a side effect of how they died. Generally, the measured width will be shorter than the true width if this is `No`.
-  - `elytraLength`: Length of the elytra in centimeters. Indicated by the green line in the image below.
-  - `elytraWidth`: Width of the elytra in centimeters. Indicated by the purple line in the image below.
-  - `measureID_length`: `measureID` from `BeetleMeasurements.csv` for the `elytraLength` of this individual. Can be used to fetch measure-specific information from `BeetleMeasurements.csv`.
-  - `measureID_width`: `measureID` from `BeetleMeasurements.csv` for the `elytraWidth` of this individual. Can be used to fetch measure-specific information from `BeetleMeasurements.csv`.
-  - `genus`: Genus of the individual (generated by taking the first word in the `scientificName` from `BeetleMeasurements.csv`). There are 36 unique genera labeled.
-  - `species`: Species of the individual (generated from the word(s) following the `genus` in the `scientificName` from `BeetleMeasurements.csv`). There are 78 unique species labeled.
-  - `NEON_sampleID`: NEON identifier for the sample (576 unique IDs), prefixed by the `plotID`. (Matches `NEON_sampleID` in `BeetleMeasurements.csv`.)
-  - `file_name`: Relative path to image from the root of the directory (`individual_images/<individualID>.jpg`); allows for image to be displayed in the dataset viewer alongside its associated metadata.
-
 
 |![Figure 1](https://huggingface.co/datasets/imageomics/BeetlePalooza/resolve/main/beetles.png)|
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