Update file structure documentation

README.md

@@ -98,11 +98,19 @@ The `individual_images` directory contains images of each individual segmented f
         <pictureID 2>.jpg
         ...
         <pictureID 577>.jpg
+        metadata.csv
+    group_images_masks/
+        <pictureID 1>_masks.jpg
+        <pictureID 2>_masks.jpg
+        ...
+        <pictureID 577>_masks.jpg
+        metadata.csv
     beetle_images_resized/
         <pictureID 1>.jpg
         <pictureID 2>.jpg
         ...
         <pictureID 577>.jpg
+        metadata.csv
     Separate_segmented_train_test_splits_80_20
         test/
             <species 1>/
@@ -120,7 +128,6 @@ The `individual_images` directory contains images of each individual segmented f
         <pictureID 2>.jpg
         ...
     BeetleMeasurements.csv
-    BeetleMeasurements_resized.csv
     individual_metadata.csv
 ```
 
@@ -174,7 +181,7 @@ Segmentation was completed by adapting the elytra length and width annotations t
   - The `NEON_sampleID` RMNP_014.20180709.CALADV.01 is repeated because there were too many individuals in the sample to organize them all in one picture. Thus, the individuals from this sample are split between two pictures: `A00000051555_1` and `A00000051555_2`.
   - The `NEON_sampleID` MOAB_001.S.20180724 was provided without scientific name identification. This sample is _Cicindela punctulata punctulata_ (confirmed in NEON biorepository records by Laura Nagel).
   - See notebooks in the [Beetle Processing Repository](https://github.com/Imageomics/2018-NEON-beetles-processing) for more information and analyses of these values, addition and renaming of the above columns from the [original measurement CSV](https://huggingface.co/datasets/imageomics/2018-NEON-beetles/blob/bbefad05d50ed55da82e99bd330afe12a5fd1d97/BeetleMeasurements.csv), and the creation of the individual metadata CSV.
-  - `BeetleMeasurements_resized.csv` has `pictureID`, `scientificName`, `genus`, `species`, `NEON_sampleID`, `siteID`, and `file_name` columns to display the resized images in the dataset viewer with some group image-level information. It will match up to information from `BeetleMeasurments.csv` on `pictureID`, though this is _not_ a unique alignment since it's not a unique ID for `BeetleMeasurements.csv`, but is for the resize.
+  - `beetle_images_resized/metadata.csv` has `pictureID`, `scientificName`, `genus`, `species`, `NEON_sampleID`, `siteID`, and `file_name` columns to display the resized images in the dataset viewer with some group image-level information. It will match up to information from `BeetleMeasurments.csv` on `pictureID`, though this is _not_ a unique alignment since it's not a unique ID for `BeetleMeasurements.csv`, but is for the resize.
 
 **Separate_segmented_train_test_splits_80_20/metadata.csv**: metadata file for the segmented individuals in the `Separate_segmented_train_test_splits_80_20` folder.
   - `filename`: name of image file (`beetle_<number code>.png`).