Datasets:
update readme.md: Addred trait_metadata part
Browse files
README.md
CHANGED
|
@@ -62,12 +62,15 @@ Observatory Network (NEON).
|
|
| 62 |
/individual_specimens
|
| 63 |
IMG_<id>_specimen_<number>.png
|
| 64 |
...
|
| 65 |
-
|
|
|
|
|
|
|
|
|
|
| 66 |
README.md
|
| 67 |
```
|
| 68 |
|
| 69 |
### Data Fields
|
| 70 |
-
**
|
| 71 |
- `individualImageFilePath`: Path to the individually cropped beetle image, e.g., `individual_specimens/IMG_<id>_specimen_<number>.png`, where `<id>` matches the group image and `<number>` indicates the beetle's position within that group image.
|
| 72 |
- `groupImageFilePath`: Path to grouped beetle images. e.g., `group_images/IMG_<id>.png` where `IMG_<id>` is the image name assigned by the camera roll.
|
| 73 |
- `individualID`: Unique identification number assigned to each individual beetle. This begins with NEON_BET.D20 to show that the unique ID corresponds to a beetle from the National Ecological Observatory Network's Domain 20, followed by six digits.
|
|
@@ -80,6 +83,24 @@ README.md
|
|
| 80 |
- `ownerInstitutionCode`: NEON owner code
|
| 81 |
- `catalogNumber`: NEON catalog number
|
| 82 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 83 |
|
| 84 |
## Dataset Creation
|
| 85 |
|
|
|
|
| 62 |
/individual_specimens
|
| 63 |
IMG_<id>_specimen_<number>.png
|
| 64 |
...
|
| 65 |
+
|
| 66 |
+
images_metadata.csv
|
| 67 |
+
traits_metadata.csv
|
| 68 |
+
|
| 69 |
README.md
|
| 70 |
```
|
| 71 |
|
| 72 |
### Data Fields
|
| 73 |
+
**images_metadata.csv**:
|
| 74 |
- `individualImageFilePath`: Path to the individually cropped beetle image, e.g., `individual_specimens/IMG_<id>_specimen_<number>.png`, where `<id>` matches the group image and `<number>` indicates the beetle's position within that group image.
|
| 75 |
- `groupImageFilePath`: Path to grouped beetle images. e.g., `group_images/IMG_<id>.png` where `IMG_<id>` is the image name assigned by the camera roll.
|
| 76 |
- `individualID`: Unique identification number assigned to each individual beetle. This begins with NEON_BET.D20 to show that the unique ID corresponds to a beetle from the National Ecological Observatory Network's Domain 20, followed by six digits.
|
|
|
|
| 83 |
- `ownerInstitutionCode`: NEON owner code
|
| 84 |
- `catalogNumber`: NEON catalog number
|
| 85 |
|
| 86 |
+
**traits_metadata.csv**:
|
| 87 |
+
- `toras_path`: File path to grouped beetle specimen images. Format: `group_images/IMG_<id>.png`, where `IMG_<id>` corresponds to the unique image identifier assigned by the camera system.
|
| 88 |
+
- `BeetlePosition`: Ordinal position of the individual beetle specimen within the group image (dorsal view). Specimens are numbered sequentially from top to bottom: topmost specimen = 1, subsequent specimens = 2, 3, 4, etc.
|
| 89 |
+
- `BeetleID`: Unique identifier for each individual beetle specimen, derived from the combination of `Image_Filepath` and `BeetlePosition` values.
|
| 90 |
+
- `coords_scalebar`: X and Y coordinate pairs defining the endpoints of the 1 cm reference scalebar, positioned in the upper or upper-left portion of each image.
|
| 91 |
+
- `coords_elytra_max_length`: X and Y coordinate pairs defining the endpoints of the maximum elytral length measurement. Measured from the midpoint of the elytro-pronotal suture (junction between pronotum and elytra) to the midpoint of the elytral apex (posterior terminus of the elytra).
|
| 92 |
+
- `coords_basal_pronotum_width`: X and Y coordinate pairs defining the endpoints of the basal pronotal width measurement at the elytro-pronotal junction.
|
| 93 |
+
- `coords_elytra_max_width`: X and Y coordinate pairs defining the endpoints of the maximum elytral width measurement. Represents the greatest transverse distance across both elytra, measured orthogonal to the elytral length axis.
|
| 94 |
+
- `px_scalebar`: Euclidean distance between coordinate endpoints of the reference scalebar (`coords_scalebar`) expressed in pixels.
|
| 95 |
+
- `px_elytra_max_length`: Euclidean distance between coordinate endpoints of the maximum elytral length (`coords_elytra_max_length`) expressed in pixels.
|
| 96 |
+
- `px_basal_pronotum_width`: Euclidean distance between coordinate endpoints of the basal pronotal width (`coords_basal_pronotum_width`) expressed in pixels.
|
| 97 |
+
- `px_elytra_max_width`: Euclidean distance between coordinate endpoints of the maximum elytral width (`coords_elytra_max_width`) expressed in pixels.
|
| 98 |
+
- `cm_scalebar`: Calibrated length of the reference scalebar in centimeters. Constant value of 1.0 cm as this represents the standard reference scale used for all measurements.
|
| 99 |
+
- `cm_elytra_max_length`: Calibrated maximum elytral length in centimeters, calculated by converting pixel measurements using the scalebar calibration factor.
|
| 100 |
+
- `cm_basal_pronotum_width`: Calibrated basal pronotal width in centimeters at the elytro-pronotal suture, calculated by converting pixel measurements using the scalebar calibration factor.
|
| 101 |
+
- `cm_elytra_max_width`: Calibrated maximum elytral width in centimeters, representing the greatest transverse dimension across the fused elytra, calculated by converting pixel measurements using the scalebar calibration factor.
|
| 102 |
+
|
| 103 |
+
|
| 104 |
|
| 105 |
## Dataset Creation
|
| 106 |
|