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Add text embeddings description

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  1. README.md +8 -1
README.md CHANGED
@@ -52,9 +52,13 @@ Image Classification, Zero-shot and few-shot Classification.
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  ## Dataset Contents
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- ```​
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  /dataset/
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  catalog.parquet
 
 
 
 
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  metadata/
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  Darwin-finches.csv
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  eol_metadata/
@@ -69,6 +73,9 @@ Image Classification, Zero-shot and few-shot Classification.
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  source=gbif/
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  ```
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  To avoid republishing existing datasets or interfering with original data source providers' ability to track use of their data, we provide all metadata here with step-by-step reproduction instructions in the [GitHub repository](https://github.com/Imageomics/TreeOfLife-toolbox/tree/main/docs#treeoflife200m-dataset-download-guide) to download the images and recreate the proper webdataset structure. This process will produce a collection of files named `shard-######.tar` in a `train` folder with which to work.
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  Inside each shard is a collection of images (named `<uuid>.jpg`), for which each has the following files:
 
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  ## Dataset Contents
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+ ```
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  /dataset/
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  catalog.parquet
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+ embeddings/
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+ txt_emb.npy
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+ txt_emb_species.json
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+ txt_emb_species.npy
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  metadata/
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  Darwin-finches.csv
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  eol_metadata/
 
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  source=gbif/
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  ```
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+ The `embeddings/` directory contains the [BioCLIP 2](https://huggingface.co/imageomics/bioclip-2) text embeddings; `_species` indicates these are for all 190,988,120 images with full taxonomic labels in the TreeOfLife-200M dataset.
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  To avoid republishing existing datasets or interfering with original data source providers' ability to track use of their data, we provide all metadata here with step-by-step reproduction instructions in the [GitHub repository](https://github.com/Imageomics/TreeOfLife-toolbox/tree/main/docs#treeoflife200m-dataset-download-guide) to download the images and recreate the proper webdataset structure. This process will produce a collection of files named `shard-######.tar` in a `train` folder with which to work.
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  Inside each shard is a collection of images (named `<uuid>.jpg`), for which each has the following files: