--- license: cc0-1.0 language: - en pretty_name: KABR Behavior Telemetry - FAIR² Drone Wildlife Monitoring Dataset task_categories: - object-detection - video-classification tags: - biology - ecology - wildlife-monitoring - drone - uav - aerial-imagery - animal-behavior - zebra - giraffe - kenya - savanna size_categories: - 100K30% of animal visible - Track IDs maintained across frames within mini-scenes - Behavior labels applied based on dominant activity in frame - Uncertain behaviors marked for expert review **Quality Control:** - Training included intensive review of species-specific behavioral definitions with video examples, technical instruction on the CVAT interface, and practice annotation sessions until achieving greater than 90\% agreement with expert annotations - Weekly calibration sessions throughout the annotation period to address interpretation drift and maintain consistency across all annotators. These included random double-annotation of 10\% of mini-scenes to monitor inter-annotator reliability (achieving $\kappa=0.88$ for primary behavioral categories), weekly calibration sessions to address any annotation drift, and final expert review by field-experienced team members for all completed annotations. **Annotation Coverage:** - Fully annotated: No (not all frames have animals) - Frames with visible animals: ~90% annotated - Behavior labels: Applied to mini-scenes (continuous sequences) - Missing annotations: Frames without animals or poor quality (blur, occlusion) #### Who are the annotators? **Annotator Team:** - Number of annotators: 10, including expert reviewers - Expertise: Research staff, professors, and students in ecology/computer science with wildlife identification training - Training provided: 2 hours initial training + ongoing feedback - Compensation: Academic credit and authorship **Subject Matter Experts:** - Daniel Rubenstein - Guidance on zebra and giraffe behavior - Charles Stewart - Computer vision and annotation protocols - Tanya Berger-Wolf - Funding, project oversight - Elizabeth Campolongo - Data science and annotation review - Matt Thompson - Software development and data processing - Jenna Kline - Drone operations, project lead, annotation review ### Personal and Sensitive Information **⚠️ Privacy and Security Considerations:** **Human Subjects:** - [x] No humans visible in imagery - Note: Flights conducted in remote areas away from settlements **Endangered Species:** - [x] Contains endangered/threatened species: *Equus grevyi* (Grevy's zebra, Endangered) - Location precision: Full GPS coordinates included (site is within protected research center) - Consultation: Mpala Research Centre and Kenya Wildlife Service approved data sharing **Cultural Sensitivity:** - [x] Traditional lands: Mpala Research Centre operates with community consent **Security:** - [x] No security concerns - Data collected in collaboration with local authorities - Full coordinates shared to support scientific use ## Considerations for Using the Data ### Dataset Statistics **Species Distribution:** | Species (Scientific Name) | Common Name | Videos | Sessions | Individuals (range) | |---------------------------|-------------|--------|----------|---------------------| | *Equus grevyi* | Grevy's zebra | 5 | 3 | 3-7 | | *Equus quagga* | Plains zebra | 30 | 11 | 2-12 | | *Giraffa reticulata* | Reticulated giraffe | 6 | 2 | 4-8 | | Mixed | Multiple species | 6 | 1 | 2-4 | **Class Balance:** - Plains zebra over-represented (opportunistic sampling) - Grevy's zebra limited by lower population density - Giraffes limited to specific habitat types **Video Characteristics:** - Frame count range: 10,000-66,000 frames per video - Duration range: 3-50 minutes per video - Altitude range: 8-72 m above sea level - Typical animal size in frame: 50-200 pixels (height) **Behavior Distribution:** - Walking: ~40% - Grazing: ~25% - Standing/vigilance: ~20% - Running: ~10% - Other (social, nursing, etc.): ~5% ### Bias, Risks, and Limitations **⚠️ Known Biases:** 1. **Geographic Bias:** - Data from single site (Mpala Research Centre, Laikipia) - May not generalize to other savanna ecosystems - Represents dry season only, captured during drought conditions 2. **Temporal Bias:** - Morning and afternoon flights only (battery/weather constraints) - Nocturnal or dawn/dusk behavior not captured - Single month snapshot (seasonal variation not represented) 3. **Species Bias:** - Plains zebra over-represented (most abundant species) - Grevy's zebra limited by population size - No data on smaller species (<50 cm body size) 4. **Environmental Bias:** - Dry season habitat conditions - Drought-affected vegetation - Clear to partly cloudy weather only - No wet season or dense vegetation scenarios 5. **Detection Bias:** - Animals in open areas more likely to be followed - Dense vegetation reduces detection probability - Cryptic species under-represented **Technical Limitations:** - **Image Quality:** Variable due to altitude, lighting, and atmospheric conditions - **Coverage Gaps:** 11 videos lack occurrence data due to missing/corrupted SRT files or failed processing - **Annotation Limitations:** Behavior labels are subjective; inter-observer agreement not quantified - **GPS Accuracy:** ±5-10m typical; may drift during long flights **Ethical Limitations:** - **Animal Welfare:** Potential for disturbance despite mitigation efforts - **Data Usage:** GPS coordinates could theoretically enable harmful uses (though species are common and well-protected at Mpala) ### Recommendations **Best Practices for Using This Dataset:** 1. **For Detection/Tracking Models:** - Account for altitude-dependent scale variation (20-50m range) - Consider species-specific detection difficulty (giraffes easier than zebras) - Test generalization to new sites (single-location training data) 2. **For Behavior Recognition:** - Class imbalance exists; consider weighted loss or resampling - Behavior labels are coarse; fine-grained states may be ambiguous - Temporal context improves accuracy (behaviors occur in sequences) 3. **For Ecological Analysis:** - Do not extrapolate to wet season without additional data - Account for detection probability varying by habitat/altitude - Animal counts are minimum estimates (some individuals may be hidden) 4. **For Drone Protocol Development:** - Correlate altitude/speed with detection rate and annotation completeness - Monitor for behavioral responses in data (alert, flee behaviors) - Consider trade-offs between data quality and disturbance risk **Ethical Use:** - Do not use for unethical wildlife targeting or harassment - Respect that full GPS coordinates enable site replication for conservation research - Cite dataset appropriately and acknowledge indigenous land stewardship **What This Dataset Should NOT Be Used For:** - Estimating absolute population sizes (sampling is not systematic) - Generalizing to wet season, nighttime, or other habitats/regions ## Licensing Information **Dataset License:** [CC0 1.0 Universal (CC0 1.0) Public Domain Dedication](https://creativecommons.org/publicdomain/zero/1.0/) **Citation Requirement:** While CC0 does not legally require citation, we strongly request that you cite the dataset and associated paper if you use this data (see [Citation section](#citation)). **Code License:** MIT License for scripts in this repository ## Citation **If you use this dataset, please cite:** **Dataset:** ```bibtex @misc{kline2024kabr_behavior_telemetry, author = {Jenna Kline and Maksim Kholiavchenko and Michelle Ramirez and Sam Stevens and Alec Sheets and Reshma Ramesh Babu and Namrata Banerji and Elizabeth Campolongo and Matthew Thompson Nina Van Tiel and Jackson Miliko and Isla Duporge and Neil Rosser and Eduardo Bessa and Charles Stewart and Tanya Berger-Wolf and Daniel Rubenstein}, title = {KABR Behavior Telemetry: Frame-Level Drone Wildlife Monitoring Dataset}, year = {2024}, publisher = {Hugging Face}, url = {https://huggingface.co/datasets/imageomics/kabr-behavior-telemetry} } ``` **Associated Paper:** ```bibtex @article{kline2024integrating, title = {Integrating Biological Data into Autonomous Remote Sensing Systems for In Situ Imageomics: A Case Study for Kenyan Animal Behavior Sensing with Unmanned Aerial Vehicles (UAVs)}, author = {Kline, Jenna M. and Campolongo, Elizabeth and Thompson, Matt and others}, journal = {arXiv preprint arXiv:2407.16864}, year = {2024}, url = {https://arxiv.org/abs/2407.16864} } ``` **FAIR² Drone Data Standard:** ```bibtex @article{kline2025fair2, title = {Toward a FAIR² Standard for Drone-Based Wildlife Monitoring Datasets}, author = {Kline, Jenna and others}, year = {2025}, note = {In preparation} } ``` ## Acknowledgements This work was supported by the [Imageomics Institute](https://imageomics.org), which is funded by the US National Science Foundation's Harnessing the Data Revolution (HDR) program under [Award #2118240](https://www.nsf.gov/awardsearch/showAward?AWD_ID=2118240) (Imageomics: A New Frontier of Biological Information Powered by Knowledge-Guided Machine Learning). Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. We thank: - **Mpala Research Centre** and **Jackson Miliko** for logistical support and site access - **Kenya Wildlife Service** for research permits - **Kenya Civil Aviation Authority** for drone operation clearances - **Local field assistants** from Mpala Research Centre - **Annotation team**: Maksim Kholiavchenko (Rensselaer Polytechnic Institute) - ORCID: 0000-0001-6757-1957 Jenna Kline (The Ohio State University) - ORCID: 0009-0006-7301-5774 Michelle Ramirez (The Ohio State University) Sam Stevens (The Ohio State University) Alec Sheets (The Ohio State University) - ORCID: 0000-0002-3737-1484 Reshma Ramesh Babu (The Ohio State University) - ORCID: 0000-0002-2517-5347 Namrata Banerji (The Ohio State University) - ORCID: 0000-0001-6813-0010 Elizabeth Campolongo (Imageomics Institute, The Ohio State University) - ORCID: 0000-0003-0846-2413 Matthew Thompson (Imageomics Institute, The Ohio State University) - ORCID: 0000-0003-0583-8585 Nina Van Tiel (Eidgenössische Technische Hochschule Zürich) - ORCID: 0000-0001-6393-5629 Daniel Rubenstein (Princeton University) - ORCID: 0000-0002-8285-1233 - **Data Collection Team:** Jenna M. Kline (The Ohio State University) Michelle Ramirez (The Ohio State University) Sam Stevens (The Ohio State University) Reshma Ramesh Babu (The Ohio State University) - ORCID: 0000-0002-2517-5347 Isla Duporge (The Ohio State University) - ORCID: 0000-0002-9873-1233 Neil Rosser (The Ohio State University) - ORCID: 0000-0002 - **Project Oversight and Guidance:** Elizabeth Campolongo (Imageomics Institute, The Ohio State University) - ORCID: 0000-0003-0846-2413 Matthew Thompson (Imageomics Institute, The Ohio State University) - ORCID: 0000-0003-0583-858 Tanya Berger-Wolf (Imageomics Institute, The Ohio State University) - ORCID: 0000-0002-1236-4153 Charles Stewart (Rensselaer Polytechnic Institute) - ORCID: 0000-0002-5204-1862 Daniel Rubenstein (Princeton University) - ORCID: 0000-0002-8285-1233 **Conservation Partners:** - Mpala Research Centre, Laikipia County, Kenya - Grevy's Zebra Trust **Data Collection Permits:** The data was gathered at the Mpala Research Centre in Kenya, in accordance with Research License No. NACOSTI/P/22/18214. The data collection protocol adhered strictly to the guidelines set forth by the Institutional Animal Care and Use Committee under permission No. IACUC 1835F. ## Validation and Quality Metrics **🤖 AI-Readiness Validation:** - [x] Machine-readable metadata (YAML front matter complete) - [x] Structured annotations in Darwin Core format - [ ] Train/val/test splits pre-defined (users should create) - [x] Class distribution documented - [x] Data loading code provided (Python scripts) - [ ] Example notebooks (planned) **🌿 Darwin Core Validation:** - [x] Event records complete and valid - [x] Occurrence records complete and valid (57/68 videos) - [x] Scientific names validated against GBIF backbone - [x] Coordinates in WGS84 - [x] Sampling protocol documented - [ ] GBIF dataset registration (planned) **⚠️ FAIR² Compliance Checklist:** - [ ] **Findable:** DOI to be assigned - [x] **Accessible:** Open access via GitHub/Hugging Face - [x] **Interoperable:** Darwin Core, Humboldt Eco, CSV/JSON formats - [x] **Reusable:** CC0 license, full provenance documented - [x] **AI-Ready:** Machine-readable, structured, versioned ## Code and Tools **Data Loading (Python):** ```python import pandas as pd # Load session-level events sessions = pd.read_csv('data/session_events.csv') # Load video-level events videos = pd.read_csv('data/video_events.csv') # Load occurrence records for a specific video occurrences = pd.read_csv('data/occurrences/11_01_23-DJI_0977.csv') # Filter to frames with detections detections = occurrences.dropna(subset=['xtl', 'ytl', 'xbr', 'ybr']) # Group by behavior behavior_counts = detections.groupby('behaviour').size() ``` **Processing Scripts:** See `scripts/` directory for: - `merge_behavior_telemetry.py` - Generate occurrence files from source data - `update_video_events.py` - Add annotation file references - `add_event_times.py` - Extract temporal bounds - `add_gps_data.py` - Calculate GPS statistics ## Glossary - **AGL:** Above Ground Level - altitude measured from terrain surface - **Darwin Core:** Biodiversity data standard maintained by TDWG - **Ethogram:** Catalog of behaviors exhibited by a species - **FAIR²:** FAIR principles extended for AI-ready datasets - **Humboldt Eco:** Extension of Darwin Core for ecological inventory data - **Mini-scene:** Continuous behavioral sequence tracked across frames - **Occurrence:** Darwin Core term for species observation record - **SRT:** SubRip subtitle format; used for drone telemetry embedding - **TDWG:** Biodiversity Information Standards (Taxonomic Databases Working Group) - **UAV:** Unmanned Aerial Vehicle (drone) - **WKT:** Well-Known Text format for geographic geometries ## Dataset Card Authors Jenna M. Kline ## Dataset Card Contact For questions about this dataset: - **Primary Contact:** Jenna M. Kline (kline.377@osu.edu) - **Issues:** [GitHub repository issues](https://github.com/Imageomics/kabr-behavior-telemetry/issues) - **KABR Project:** https://imageomics.github.io/KABR/ --- **Version History:** - v1.1.0 (2026-01-02): Added occurrence files, GPS data, temporal bounds, updated Darwin Core events - v1.0.0 (2024-12-31): Initial release with session and video event metadata --- *This dataset card follows the FAIR² Drone Data Standard and extends the [Imageomics dataset card template](https://imageomics.github.io/Imageomics-guide/wiki-guide/HF_DatasetCard_Template_mkdocs/).*