jakesmbeattie commited on
Commit
0fcd7b5
·
verified ·
1 Parent(s): ae98eef

Update README.md

Browse files

Needs citation added still

Files changed (1) hide show
  1. README.md +239 -3
README.md CHANGED
@@ -1,3 +1,239 @@
1
- ---
2
- license: cc-by-4.0
3
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: cc-by-4.0
3
+ language:
4
+ - en
5
+ pretty_name: upper_waiakea_passive_recordings
6
+ task_categories: [audio-classification] # ex: image-classification, see key list at https://github.com/huggingface/huggingface.js/blob/main/packages/tasks/src/pipelines.ts
7
+ modalities: [Audio]
8
+ tags:
9
+ - biology
10
+ - audio
11
+ - bioacoustics
12
+ - animals
13
+ - CV
14
+ - Hawaiian birds
15
+ size_categories: 1K<n<10K # ex: n<1K, 1K<n<10K, 10K<n<100K, 100K<n<1M, ...
16
+ ---
17
+
18
+ <!--
19
+
20
+ NOTE: Add more tags (your particular animal, type of model and use-case, etc.).
21
+
22
+ As with your GitHub Project repo, it is important to choose an appropriate license for your dataset. The default license is [CC0](https://creativecommons.org/publicdomain/zero/1.0/) (public domain dedication, see [Dryad's explanation of why to use CC0](https://blog.datadryad.org/2023/05/30/good-data-practices-removing-barriers-to-data-reuse-with-cc0-licensing/)). Alongside the appropriate stakeholders (eg., your PI, co-authors), select a license that is [Open Source Initiative](https://opensource.org/licenses) (OSI) compliant.
23
+ For more information on how to choose a license and why it matters, see [Choose A License](https://choosealicense.com) and [A Quick Guide to Software Licensing for the Scientist-Programmer](https://doi.org/10.1371/journal.pcbi.1002598) by A. Morin, et al.
24
+ See the [Imageomics policy for licensing](https://docs.google.com/document/d/1SlITG-r7kdJB6C8f4FCJ9Z7o7ccwldZoSRJKjhRAWVA/edit#heading=h.c1sxg0wsiqru) for more information.
25
+
26
+ See more options for the above information by clicking "edit dataset card" on your repo.
27
+
28
+ Fill in as much information as you can at each location that says "More information needed".
29
+ -->
30
+
31
+ <!--
32
+ Image with caption (jpg or png):
33
+ |![Figure #](https://huggingface.co/datasets/imageomics/<data-repo>/resolve/main/<filepath>)|
34
+ |:--|
35
+ |**Figure #.** [Image of <>](https://huggingface.co/datasets/imageomics/<data-repo>/raw/main/<filepath>) <caption description>.|
36
+ -->
37
+
38
+ <!--
39
+ Notes on styling:
40
+
41
+ To render LaTex in your README, wrap the code in `\\(` and `\\)`. Example: \\(\frac{1}{2}\\)
42
+
43
+ Escape underscores ("_") with a "\". Example: image\_RGB
44
+ -->
45
+
46
+ # Dataset Card for upper_waiakea_passive_recordings
47
+
48
+ <!-- Provide a quick summary of what the dataset is or can be used for. -->
49
+
50
+ ## Dataset Details
51
+
52
+
53
+
54
+ ### Dataset Description
55
+ This is a dataset containing unlabelled, unprocessed passive acoustic recordings of Hawaiian birds in the Upper Waiākea Forst Reserve in Hawaii. This dataset is intended for use in unsupervised audio analysis methods, classification using existing models, and other machine learning and ecology research purposes.
56
+
57
+ - **Curated by:** Namrata Banerji, Jacob Beattie, Hikaru Keebler, Kate Nepovinnykh
58
+ <!-- Provide the basic links for the dataset. These will show up on the sidebar to the right of your dataset card ("Curated by" too). -->
59
+ - **Homepage:**
60
+ - **Repository:** [related project repo]
61
+ - **Paper:**
62
+
63
+
64
+ <!-- Provide a longer summary of what this dataset is. -->
65
+ [More Information Needed]
66
+
67
+ <!--This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1), and further altered to suit Imageomics Institute needs.-->
68
+
69
+
70
+ ### Supported Tasks and Leaderboards
71
+ This dataset contains passive acoustic recordings collected as part of the Experiential Introduction to AI and Ecology course through the [Imageomics Institute](https://github.com/imageomics) and [ABC Global Center](https://www.abcresearchcenter.org/) during January 2025.
72
+
73
+ This dataset is intended for use with unsupervised computer vision or acoustic machine learning models. No labels are provided, but recorder locations and recording timestamps are included, allowing for analysis of the relationship between ecological factors and variations in birdsong.
74
+
75
+ The dataset contains ~1623 hours of recording from 19 different recorders located in the Upper Waiākea Forest Reserve.
76
+
77
+ ## Dataset Structure
78
+
79
+ /kipuka_data/
80
+ <recorder_id>/
81
+ <recorder_id>_Summary.txt
82
+ Data/
83
+ <recorder_id>_YYYYMMDD_HHMMSS.wav
84
+ ...
85
+ <recorder_id>/
86
+ ...
87
+ ...
88
+ kipuka_metadata.csv
89
+
90
+ ### Data Instances
91
+ All audio files are named (recorder_id)-YYYYMMDD-HHMMSS.wav inside a folder named after the recorder id. Each recording is 1 hour long
92
+
93
+ ### Data Fields
94
+
95
+ recorder_id,card_code,point_id,HDD Path,Deployment Date,Retrieval Date,Latitude,Longitude
96
+
97
+ **kipuka_metadata.csv**
98
+ - `recorder_id`: Unique identifier for each recorder
99
+ - `card_code`: Unique identifier for SD card used in each recorder
100
+ - `point_id`: Unique identifier for each point where a recorder was placed
101
+ - `Deployment Date`: Date the recorder was deployed
102
+ - `Retrieval Date`: Date the recorder was retrieved.
103
+ - `Latitude`: Latitude of recorder
104
+ - `Longitude`: Longitude of recorder
105
+
106
+ ### Data Splits
107
+ Only one data split: `data`. If being used for training/testing/validation of models, splits must be made manually.
108
+ <!--
109
+ Give your train-test splits for benchmarking; could be as simple as "split is indicated by the `split` column in the metadata file: `train`, `val`, or `test`." Or perhaps this is just the training dataset and other datasets were used for testing (you may indicate which were used).
110
+ -->
111
+
112
+ ## Dataset Creation
113
+
114
+ This dataset was compiled as part of the field component of the Experiential Introduction to AI and Ecology Course run by the Imageomics Institute and the AI and Biodiversity Change (ABC) Global Center. This field work was done on the island of Hawai'i January 15-30, 2025.
115
+
116
+ ### Curation Rationale
117
+ This dataset was created in order to study Hawaiian bird call variation across kipuka. Passive acoustic monitoring was done to capture Hawaiian bird calls across varying kipuka.
118
+ <!-- Motivation for the creation of this dataset. For instance, what you intended to study and why that required curation of a new dataset (or if it's newly collected data and why the data was collected (intended use)), etc. -->
119
+
120
+ ### Source Data
121
+ These data were originally created by placing recorders in kipuka in the Upper Waiākea Forest Reserve on Hawaii island, recording bird calls.
122
+
123
+ <!-- This section describes the source data (e.g., news text and headlines, social media posts, translated sentences, ...). As well as an original source it was created from (e.g., sampling from Zenodo records, compiling images from different aggregators, etc.) -->
124
+
125
+ #### Data Collection and Processing
126
+ Recorder locations were selected based on historic datasets (specifically data from Patrick Hart from UH Hilo). These data have significant overlap with historic data, while retaining only minimally sufficient overlap with recently collected data to allow for calibration between datasets.
127
+
128
+ #### Who are the source data producers?
129
+ These data are produced by members of the ABC Global Center.
130
+ <!-- This section describes the people or systems who originally created the data.
131
+
132
+ Ex: This dataset is a collection of images taken of the butterfly collection housed at the Ohio State University Museum of Biological Diversity. The associated labels and metadata are the information provided with the collection from biologists that study butterflies and supplied the specimens to the museum.
133
+ -->
134
+
135
+
136
+ ## Considerations for Using the Data
137
+ These data are unlabelled, unprocessed, and may still contain significant noise. Employing source separation or audio preprocessing methods may be beneficial to downstream analyses. Also note, humans or vehicles may be audible in some recorders due to the presence of cars, helicopters, or people.
138
+ <!--
139
+ Things to consider while working with the dataset. For instance, maybe there are hybrids and they are labeled in the `hybrid_stat` column, so to get a subset without hybrids, subset to all instances in the metadata file such that `hybrid_stat` is _not_ "hybrid".
140
+ -->
141
+
142
+ <!-- ### Bias, Risks, and Limitations -->
143
+ [More Information Needed]
144
+ <!-- This section is meant to convey both technical and sociotechnical limitations. Could also address misuse, malicious use, and uses that the dataset will not work well for.-->
145
+
146
+ <!-- For instance, if your data exhibits a long-tailed distribution (and why). -->
147
+
148
+ <!-- ### Recommendations -->
149
+ [More Information Needed]
150
+ <!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
151
+
152
+ ## Licensing Information
153
+ This dataset is available to share and adapt for any use under the [CC BY 4.0](https://creativecommons.org/licenses/by/4.0/) license, provided appropriate credit is given. We ask that you cite this dataset if you make use of these data in any work or product.
154
+
155
+ <!-- See notes at top of file about selecting a license.
156
+ If you choose CC0: This dataset is dedicated to the public domain for the benefit of scientific pursuits. We ask that you cite the dataset and journal paper using the below citations if you make use of it in your research.
157
+
158
+ Be sure to note different licensing of images if they have a different license from the compilation.
159
+ ex:
160
+ The data (images and text) contain a variety of licensing restrictions mostly within the CC family. Each image and text in this dataset is provided under the least restrictive terms allowed by its licensing requirements as provided to us (i.e, we impose no additional restrictions past those specified by licenses in the license file).
161
+
162
+ EOL images contain a variety of licenses ranging from [CC0](https://creativecommons.org/publicdomain/zero/1.0/) to [CC BY-NC-SA](https://creativecommons.org/licenses/by-nc-sa/4.0/).
163
+ For license and citation information by image, see our [license file](https://huggingface.co/datasets/imageomics/treeoflife-10m/blob/main/metadata/licenses.csv).
164
+
165
+ This dataset (the compilation) has been marked as dedicated to the public domain by applying the [CC0 Public Domain Waiver](https://creativecommons.org/publicdomain/zero/1.0/). However, images may be licensed under different terms (as noted above).
166
+ -->
167
+
168
+ ## Citation
169
+ [More Information Needed]
170
+
171
+ **BibTeX:**
172
+ <!--
173
+ If you want to include BibTex, replace "<>"s with your info
174
+
175
+ **Data**
176
+ ```​
177
+ @misc{<ref_code>,
178
+ author = {<author1 and author2>},
179
+ title = {<title>},
180
+ year = {<year>},
181
+ url = {https://huggingface.co/datasets/imageomics/<dataset_name>},
182
+ doi = {<doi once generated>},
183
+ publisher = {Hugging Face}
184
+ }
185
+ ```​
186
+
187
+ -for an associated paper:
188
+ **Paper**
189
+ ```​
190
+ @article{<ref_code>,
191
+ title = {<title>},
192
+ author = {<author1 and author2>},
193
+ journal = {<journal_name>},
194
+ year = <year>,
195
+ url = {<DOI_URL>},
196
+ doi = {<DOI>}
197
+ }
198
+ ```​
199
+ -->
200
+
201
+ <!---
202
+ If the data is modified from another source, add the following.
203
+
204
+ Please be sure to also cite the original data source(s):
205
+ <citation>
206
+ -->
207
+
208
+
209
+ ## Acknowledgements
210
+
211
+ This work was supported by both the [Imageomics Institute](https://imageomics.org) and the [AI and Biodiversity Change (ABC) Global Center](https://abcresearchcenter.org/). The Imageomics Institute is funded by the US National Science Foundation's Harnessing the Data Revolution (HDR) program under [Award #2118240](https://www.nsf.gov/awardsearch/showAward?AWD_ID=2118240) (Imageomics: A New Frontier of Biological Information Powered by Knowledge-Guided Machine Learning). The ABC Global Center is funded by the US National Science Foundation under [Award No. 2330423](https://www.nsf.gov/awardsearch/showAward?AWD_ID=2330423&HistoricalAwards=false) and Natural Sciences and Engineering Research Council of Canada under [Award No. 585136](https://www.nserc-crsng.gc.ca/ase-oro/Details-Detailles_eng.asp?id=782440). Any opinions, findings and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation or Natural Sciences and Engineering Research Council of Canada.
212
+
213
+ <!-- You may also want to credit the source of your data, i.e., if you went to a museum or nature preserve to collect it.
214
+ -->
215
+
216
+ This material is based in part upon work supported by the National Ecological Observatory Network (NEON), a program sponsored by the U.S. National Science Foundation (NSF) and operated under cooperative agreement by Battelle.
217
+
218
+ <!-- ## Glossary -->
219
+
220
+ <!-- [optional] If relevant, include terms and calculations in this section that can help readers understand the dataset or dataset card. -->
221
+
222
+ <!-- ## More Information -->
223
+
224
+ <!-- [optional] Any other relevant information that doesn't fit elsewhere. -->
225
+
226
+ ## Dataset Card Authors
227
+ Namrata Banerji, Jacob Beattie, Hikaru Keebler, and Kate Nepovinnykh
228
+
229
+ [More Information Needed]
230
+
231
+ ## Dataset Card Contact
232
+ banerji.8@osu.edu
233
+ beattie.74@osu.edu
234
+ nepove@rpi.edu
235
+ keebler.8@osu.edu
236
+
237
+
238
+ [More Information Needed--optional]
239
+ <!-- Could include who to contact with questions, but this is also what the "Discussions" tab is for. -->