""" Process full CardS dataset and export to Parquet. Processes all 7000+ CardS files and exports cleaned data. """ import sys import argparse from pathlib import Path from datetime import datetime sys.path.insert(0, str(Path(__file__).parent.parent)) from src.core.config import Config from src.core.output_lock import seal_output, unlock_for_write from src.processors.cardS_processor import CardSProcessor def main(): parser = argparse.ArgumentParser(description='Process CardS dataset') parser.add_argument('--audit', action='store_true', help='Include source_file and source_row_number columns in output') parser.add_argument('--data-dir', help='Override raw data directory (default: data/)') args = parser.parse_args() print("="*70) print("CardS Full Dataset Processing") print("="*70) print() start_time = datetime.now() # Load config config = Config('config/cleaning_config.yaml') # Override audit mode if --audit flag is provided if args.audit: config.set('processing.audit_mode', True) print("Audit mode: ENABLED (including source_file and source_row_number columns)") print() # Override data directory if --data-dir flag is provided if args.data_dir: config.set('directories.raw_data', args.data_dir) # Create output directory output_dir = config.output_dir / 'parquet' output_dir.mkdir(parents=True, exist_ok=True) output_file = output_dir / 'cardS_cleaned.parquet' print(f"Output file: {output_file}") print() # Create processor processor = CardSProcessor(config) # Get file count all_files = processor.get_file_list() print(f"Total files to process: {len(all_files)}") print() # Process all files print("Processing all CardS files...") print("This may take 30-60 minutes depending on system speed...") print() try: df = processor.process() # Get statistics stats = processor.get_stats() print() print("="*70) print("āœ“ Processing Complete!") print("="*70) print() print("Processing Statistics:") print(f" Files processed: {stats['files_processed']:,}") print(f" Files failed: {stats['files_failed']:,}") success_rate = (stats['files_processed'] / len(all_files)) * 100 print(f" Success rate: {success_rate:.1f}%") print() print(f" Total rows: {len(df):,}") print(f" Valid rows: {stats['rows_valid']:,}") print(f" Step rows: {stats['rows_step']:,}") print(f" Completion rows: {stats['rows_completion']:,}") print() # Data quality metrics if len(df) > 0: completeness = df.notna().sum() / len(df) avg_completeness = completeness.mean() * 100 # Date range if 'timestamp' in df.columns and df['timestamp'].notna().any(): date_col = pd.to_datetime(df['timestamp'], errors='coerce') min_date = date_col.min() max_date = date_col.max() date_span = (max_date - min_date).days print("Data Quality:") print(f" Completeness (avg): {avg_completeness:.1f}%") missing_ts = df['timestamp'].isna().sum() print(f" Missing timestamps: {missing_ts:,} ({missing_ts/len(df)*100:.1f}%)") print() print(f"Date range: {min_date} to {max_date}") print(f"Span: {date_span:,} days") print() # User statistics if 'user_id' in df.columns: unique_users = df['user_id'].nunique() print("User Statistics:") print(f" Unique users: {unique_users:,}") # Calculate trials per user (completion rows only) completion_df = df[df['row_type'] == 'completion'] if len(completion_df) > 0: trials_per_user = completion_df.groupby('user_id')['trial'].max().mean() print(f" Trials per user (mean): {trials_per_user:.0f}") print() processing_time = datetime.now() - start_time print(f"Processing time: {processing_time}") if len(df) > 0: rows_per_sec = len(df) / processing_time.total_seconds() print(f"Speed: {rows_per_sec:.0f} rows/second") print() # Export to Parquet print("Exporting to Parquet...") unlock_for_write(output_file) df.to_parquet(output_file, compression='snappy', engine='pyarrow', index=False) seal_output(output_file) # Get file size file_size_mb = output_file.stat().st_size / (1024 * 1024) print(f"āœ“ Exported to: {output_file}") print(f" File size: {file_size_mb:.1f} MB") print() # Calculate compression ratio (estimate) if len(df) > 0: # Rough estimate: 200 bytes per row uncompressed est_uncompressed = (len(df) * 200) / (1024 * 1024) compression_ratio = est_uncompressed / file_size_mb print(f" Compression ratio: {compression_ratio:.1f}x") print() # Error summary errata_log = Path(f"logs/errata/cardS_{datetime.now().strftime('%Y%m%d_%H%M%S')}_errata.jsonl") if errata_log.exists(): print("Error Summary:") import json error_types = {} total_errors = 0 with open(errata_log, 'r') as f: for line in f: try: data = json.loads(line) if data.get('type') == 'error': error_type = data.get('error_type', 'unknown') error_types[error_type] = error_types.get(error_type, 0) + 1 total_errors += 1 except: pass print(f" Total errors: {total_errors}") files_with_errors = stats['files_failed'] print(f" Files with errors: {files_with_errors}") if error_types: print(f" Error types:") for error_type, count in sorted(error_types.items(), key=lambda x: x[1], reverse=True): print(f" - {error_type}: {count}") print(f" Errata log: {errata_log}") print() print("="*70) print("āœ“ CardS Dataset Processing Complete!") print("="*70) except Exception as e: print(f"\nāŒ Error during processing: {e}") import traceback traceback.print_exc() sys.exit(1) if __name__ == '__main__': import pandas as pd main()