""" Configuration management for the GotPsi data cleaning pipeline. Handles loading and validation of YAML configuration files. """ from pathlib import Path from typing import Any, Dict import yaml from .exceptions import ConfigurationError class Config: """ Configuration manager for the data cleaning pipeline. Loads configuration from YAML file and provides typed access to configuration values. """ def __init__(self, config_path: str | Path): """ Initialize configuration from YAML file. Args: config_path: Path to the YAML configuration file Raises: ConfigurationError: If config file is missing or invalid """ self.config_path = Path(config_path) self._config: Dict[str, Any] = {} self._load_config() self._validate_config() def _load_config(self) -> None: """Load configuration from YAML file.""" if not self.config_path.exists(): raise ConfigurationError( f"Configuration file not found: {self.config_path}" ) try: with open(self.config_path, 'r') as f: self._config = yaml.safe_load(f) except yaml.YAMLError as e: raise ConfigurationError( f"Failed to parse configuration file: {e}" ) def _validate_config(self) -> None: """Validate that required configuration keys exist.""" required_sections = [ 'directories', 'processing', 'encoding', 'delimiters', 'temporal', 'schema', 'quality', 'export', 'datasets', 'logging' ] missing = [s for s in required_sections if s not in self._config] if missing: raise ConfigurationError( f"Missing required configuration sections: {missing}" ) def get(self, key: str, default: Any = None) -> Any: """ Get configuration value by key. Supports dot notation for nested keys (e.g., 'directories.raw_data') Args: key: Configuration key (supports dot notation) default: Default value if key not found Returns: Configuration value or default """ keys = key.split('.') value = self._config for k in keys: if isinstance(value, dict): value = value.get(k) if value is None: return default else: return default return value def set(self, key: str, value: Any) -> None: """ Set configuration value by key. Supports dot notation for nested keys (e.g., 'processing.audit_mode') Args: key: Configuration key (supports dot notation) value: Value to set """ keys = key.split('.') config = self._config # Navigate to the parent dict for k in keys[:-1]: if k not in config: config[k] = {} config = config[k] # Set the final value config[keys[-1]] = value def __getitem__(self, key: str) -> Any: """Get configuration value using dict-like syntax.""" value = self.get(key) if value is None: raise KeyError(f"Configuration key not found: {key}") return value @property def raw_data_dir(self) -> Path: """Get raw data directory as Path object.""" return Path(self.get('directories.raw_data', 'data/')) @property def output_dir(self) -> Path: """Get output directory as Path object.""" return Path(self.get('directories.output', 'output/')) @property def logs_dir(self) -> Path: """Get logs directory as Path object.""" return Path(self.get('directories.logs', 'logs/')) @property def supplemental_dir(self) -> Path: """Get supplemental directory as Path object.""" return Path(self.get('directories.supplemental', 'supplemental/')) @property def chunk_size(self) -> int: """Get processing chunk size.""" return self.get('processing.chunk_size', 50000) @property def n_workers(self) -> int: """Get number of parallel workers.""" return self.get('processing.n_workers', 0) def dataset_config(self, dataset_name: str) -> Dict[str, Any]: """ Get configuration for a specific dataset. Args: dataset_name: Name of the dataset Returns: Dataset configuration dictionary Raises: ConfigurationError: If dataset not configured """ datasets = self.get('datasets', {}) if dataset_name not in datasets: raise ConfigurationError( f"Dataset '{dataset_name}' not found in configuration" ) return datasets[dataset_name]