CAT-Net / data /dataloaders /dataset_specifics.py
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"""
Dataset Specifics
Extended from ADNet code by Hansen et al.
"""
import torch
import random
def get_label_names(dataset):
label_names = {}
if dataset == 'CMR':
label_names[0] = 'BG'
label_names[1] = 'LV-MYO'
label_names[2] = 'LV-BP'
label_names[3] = 'RV'
elif dataset == 'CHAOST2':
label_names[0] = 'BG'
label_names[1] = 'LIVER'
label_names[2] = 'RK'
label_names[3] = 'LK'
label_names[4] = 'SPLEEN'
elif dataset == 'SABS':
label_names[0] = 'BG'
label_names[1] = 'SPLEEN'
label_names[2] = 'RK'
label_names[3] = 'LK'
label_names[4] = 'GALLBLADDER'
label_names[5] = 'ESOPHAGUS'
label_names[6] = 'LIVER'
label_names[7] = 'STOMACH'
label_names[8] = 'AORTA'
label_names[9] = 'IVC' # Inferior vena cava
label_names[10] = 'PS_VEIN' # portal vein and splenic vein
label_names[11] = 'PANCREAS'
label_names[12] = 'AG_R' # right adrenal gland
label_names[13] = 'AG_L' # left adrenal gland
return label_names
def get_folds(dataset):
FOLD = {}
if dataset == 'CMR':
FOLD[0] = set(range(0, 8))
FOLD[1] = set(range(7, 15))
FOLD[2] = set(range(14, 22))
FOLD[3] = set(range(21, 29))
FOLD[4] = set(range(28, 35))
FOLD[4].update([0])
return FOLD
elif dataset == 'CHAOST2':
FOLD[0] = set(range(0, 5))
FOLD[1] = set(range(4, 9))
FOLD[2] = set(range(8, 13))
FOLD[3] = set(range(12, 17))
FOLD[4] = set(range(16, 20))
FOLD[4].update([0])
return FOLD
elif dataset == 'SABS':
FOLD[0] = set(range(0, 7))
FOLD[1] = set(range(6, 13))
FOLD[2] = set(range(12, 19))
FOLD[3] = set(range(18, 25))
FOLD[4] = set(range(24, 30))
FOLD[4].update([0])
return FOLD
else:
raise ValueError(f'Dataset: {dataset} not found')
def sample_xy(spr, k=0, b=215):
_, h, v = torch.where(spr)
if len(h) == 0 or len(v) == 0:
horizontal = 0
vertical = 0
else:
h_min = min(h)
h_max = max(h)
if b > (h_max - h_min):
kk = min(k, int((h_max - h_min) / 2))
horizontal = random.randint(max(h_max - b - kk, 0), min(h_min + kk, 256 - b - 1))
else:
kk = min(k, int(b / 2))
horizontal = random.randint(max(h_min - kk, 0), min(h_max - b + kk, 256 - b - 1))
v_min = min(v)
v_max = max(v)
if b > (v_max - v_min):
kk = min(k, int((v_max - v_min) / 2))
vertical = random.randint(max(v_max - b - kk, 0), min(v_min + kk, 256 - b - 1))
else:
kk = min(k, int(b / 2))
vertical = random.randint(max(v_min - kk, 0), min(v_max - b + kk, 256 - b - 1))
return horizontal, vertical