#!/bin/bash # test a model to segment abdominal/cardiac MRI GPUID1=0 export CUDA_VISIBLE_DEVICES=$GPUID1 ###### Shared configs ###### DATASET='CHAOST2' #DATASET='CMR' NWORKER=0 RUNS=1 ALL_EV=(0 1 2 3 4) # 5-fold cross validation (0, 1, 2, 3, 4) TEST_LABEL=[1,2,3,4] ###### Training configs ###### NSTEP=30000 DECAY=0.98 MAX_ITER=1000 # defines the size of an epoch SNAPSHOT_INTERVAL=10000 # interval for saving snapshot SEED=2021 N_PART=3 # defines the number of chunks for evaluation ALL_SUPP=(3) # CHAOST2: 0-4, CMR: 0-7 echo ======================================================================== for EVAL_FOLD in "${ALL_EV[@]}" do PREFIX="test_${DATASET}_cv${EVAL_FOLD}" echo $PREFIX LOGDIR="./results" if [ ! -d $LOGDIR ] then mkdir -p $LOGDIR fi for SUPP_IDX in "${ALL_SUPP[@]}" do # RELOAD_PATH='please feed the absolute path to the trained weights here' # path to the reloaded model RELOAD_MODEL_PATH="./exps_on_CHAOST2/CATNet_train_CHAOST2_cv${EVAL_FOLD}/1/snapshots/100000.pth" cd D:/CV/Q-Net-main python test.py with \ mode="test" \ dataset=$DATASET \ num_workers=$NWORKER \ n_steps=$NSTEP \ eval_fold=$EVAL_FOLD \ max_iters_per_load=$MAX_ITER \ supp_idx=$SUPP_IDX \ test_label=$TEST_LABEL \ seed=$SEED \ n_part=$N_PART \ reload_model_path=$RELOAD_MODEL_PATH \ save_snapshot_every=$SNAPSHOT_INTERVAL \ lr_step_gamma=$DECAY \ path.log_dir=$LOGDIR done done