from random import shuffle import numpy as np import os from PIL import Image import shutil Image.MAX_IMAGE_PIXELS = None def filter_mask(img_names): new_img_name = [] for img_name in img_names: if 'mask' not in img_name: new_img_name.append(img_name) return new_img_name def checkBlank(patch): patch = np.array(patch.convert("RGB")) m = patch.mean() if 200 <= m <= 255: return False else: return True def filter_names(mask_root, img_names): new_names = [] for img_name in img_names: img = Image.open(mask_root+img_name) if img.size[0] < 8000 and img.size[1] < 8000: new_names.append(img_name) return new_names def move_file(source_root, target_root, source_names): # clean the original file if not os.path.exists(target_root + 'images/'): os.mkdir(target_root + 'images/') os.mkdir(target_root + 'labels/') else: shutil.rmtree(target_root + 'images/') shutil.rmtree(target_root + 'labels/') os.mkdir(target_root + 'images/') os.mkdir(target_root + 'labels/') target_image_root = target_root + 'images/' target_label_root = target_root + 'labels/' for name in source_names: source_image = source_root+name source_label = source_root+name[:-4]+'_mask.png' shutil.copyfile(source_image, target_image_root+name) shutil.copyfile(source_label, target_label_root+name[:-4]+'_mask.png') if __name__ == "__main__": np.random.seed(66) all_root = '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/' all_names = os.listdir(all_root) all_names = filter_mask(all_names) all_names = filter_names(all_root, all_names) np.random.shuffle(all_names) print(len(all_names)) train_names_5 = all_names[:5] train_names_15 = all_names[:10] train_names_30 = all_names[:20] train_names_150 = all_names[:100] val_names = all_names[100:110] test_names = all_names[110:130] # train_names = all_names[:25*7] # val_names = all_names[25*7:25*8] # test_names = all_names[25*8:] # # move_file(all_root, '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train/', train_names) # move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/', # '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-2/', train_names_2) move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/', '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-5/', train_names_5) move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/', '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-10/', train_names_15) move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/', '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-20/', train_names_30) move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/', '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-100/', train_names_150) # move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/', # '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-100/', train_names_100) move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/', '/mnt/data2/lanfz/datasets/digestpath2019/tissue-val/', val_names) move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/', '/mnt/data2/lanfz/datasets/digestpath2019/tissue-test/', test_names) # move_file('/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos/', '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-test/', test_names) # source_root = '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v1/' # target_root = '/mnt/data2/lanfz/datasets/digestpath2019/tissue-train-pos-v2/' # img_names = os.listdir(source_root) # for img_name in img_names: # if 'mask' not in img_name: # shutil.copyfile(source_root+img_name, target_root+img_name)