import unittest from rdkit.Chem import MolFromSmiles as fromSmiles from rdkit.Chem import MolToSmiles as toSmiles from typing import Sequence, Tuple, Union, Type import ClickReaction import ClickReaction.Exceptions import ClickReaction.BaseReaction Reactants = Sequence[str] ReactantNames = Sequence[str] NoProductTestCase = Reactants OneProductTestCase = Tuple[Reactants, str] MultipleProductTestCase = Tuple[Reactants, Sequence[str]] AnyProductTestCase = Union[NoProductTestCase, OneProductTestCase, MultipleProductTestCase] class ReactionTestCase(unittest.TestCase): def set_reaction(self, reaction: Type): self.reaction = reaction def prepare_testcases(self, case: AnyProductTestCase, reactant_names: ReactantNames, with_product: bool = True, ): product_expected = None if with_product is True: # Product is always the last one - we use here to canonicalize given smiles. if isinstance(case[1], str): product_expected = toSmiles(fromSmiles(case[1])) else: product_expected = [toSmiles(fromSmiles(x)) for x in case[1]] reactants = case[0] else: reactants = case # Convert reactants to objects from smiles reactants = [fromSmiles(x) for x in reactants] # create a dictonary reactants = {reactant_names[x]: reactants[x] for x in range(len(reactants))} return product_expected, reactants def _test_one_product(self, tests: Sequence[OneProductTestCase], reactant_names: ReactantNames, symmetrical_as_one: bool = False, ): """ Tests for giving exactly one expected product. """ for case in tests: with self.subTest(case=case): product_expected, reactants = self.prepare_testcases(case, reactant_names) # Run the reaction product = self.reaction(**reactants).get_product(symmetrical_as_one=symmetrical_as_one) # Test if there was any product self.assertIsNotNone(product) # Test if the product is what we expected product_smiles = toSmiles(product) self.assertEqual(product_expected, product_smiles) def _test_no_product(self, tests: Sequence[NoProductTestCase], reactant_names: ReactantNames, symmetrical_as_one: bool = False, ): """ Tests for failing to give a product. """ for case in tests: with self.subTest(case=case): _, reactants = self.prepare_testcases(case, reactant_names, with_product=False) with self.assertRaises(ClickReaction.Exceptions.NoProductError): test_product = self.reaction(**reactants).get_product(symmetrical_as_one=symmetrical_as_one) def _test_all_possible_products(self, tests: Sequence[MultipleProductTestCase], reactant_names: ReactantNames, symmetrical_as_one: bool = False, ): """ Tests if all possible expected products are covered from one reaction. """ for case in tests: with self.subTest(case=case): products_expected, reactants = self.prepare_testcases(case, reactant_names) # getProduct only expects 1 product - this must give an Exception with self.assertRaises(ClickReaction.Exceptions.AmbiguousProductError): product = self.reaction(**reactants).get_product() # getProducts should be used instead. products = self.reaction(**reactants).get_products(symmetrical_as_one=symmetrical_as_one) products_found = 0 for p in products: # Convert product to smiles p_smiles = toSmiles(p) self.assertIn(p_smiles, products_expected) products_found += 1 self.assertEqual(products_found, len(products), "Not all products wer expected") self.assertEqual(len(products), len(products_expected), "Mismatch between expected products and actual products.")