import ClickReaction from tests import TestHelper class AmideCouplingTest(TestHelper.ReactionTestCase): reactant_names = ["amine", "acid"] def setUp(self): self.set_reaction(ClickReaction.AmideCoupling) def test_one_product(self): reactants = [ # Ammonia and ammonium with acetic acid (("N", "OC(C)=O"), "O=C(C)N"), (("[NH4+]", "OC(C)=O"), "O=C(C)N"), (("N(-[H])(-[H])(-[H])", "OC(C)=O"), "O=C(C)N"), # Primary amines with simple acids (("CN", "OC=O"), "CNC=O"), (("CCN", "OC(C)=O"), "O=C(C)NCC"), (("CN", "OC(C1=CC=CC=C1)=O"), "O=C(C1=CC=CC=C1)NC"), (("NC1=CC=CC(CN)=C1", "OC(C)=O"), "NC1=CC=CC(CNC(C)=O)=C1"), # Secondary amines with simple acids (("CNC", "OC(C)=O"), "O=C(C)N(C)C"), # Primary ammonium with simple acids (("CC[NH3+]", "OC(C)=O"), "O=C(C)NCC"), # Secondary ammonium with simple acids (("C[NH2+]C", "OC(C)=O"), "O=C(C)N(C)C"), # Simple amine with carboxylate (("CCN", "[O-]C(C)=O"), "O=C(C)NCC"), # Secondary ammonium with carboxylate (("C[NH2+]C", "[O-]C(C(C1=CC=CC=C1)(F)Cl)=O"), "O=C(C(C1=CC=CC=C1)(F)Cl)N(C)C"), # # Amine with active esters # # N-Hydroxysuccinimide (("CCN", "CCC(ON1C(CCC1=O)=O)=O"), "CCC(NCC)=O"), # N-Sulfo-Hydroxysuccinimide (("CCN", "CCC(ON1C(CC(S(=O)(O)=O)C1=O)=O)=O"), "CCC(NCC)=O"), # p-Nitrophenol (("CCN", "CCC(OC1=CC=C([N+]([O-])=O)C=C1)=O"), "CCC(NCC)=O"), # Pentafluorophenyl (("CCN", "CCC(OC1=C(F)C(F)=C(F)C(F)=C1F)=O"), "CCC(NCC)=O"), ] self._test_one_product(reactants, self.reactant_names) # Those tests should not give any product. def test_no_product(self): reactants = [ # No primary amide ("NC(C)=O", "OC(C)=O"), # No secondary amide ("CC(NC)=O", "OC(C)=O"), # No N-methyl urea ("NC(NC)=O", "OC(C)=O"), # No carbamates ("O=C(OC)NC", "OC(C)=O"), # No imides ("CC(NC(C)=O)=O", "OC(C)=O"), # No aniline ("NC1=CC=CC=C1", "OC(C1=CC=CC=C1)=O"), # No tertiary amines ("CN(C)C", "OC(C)=O"), # No guanosine ("NC(=N)N", "OC(C)=O") ] self._test_no_product(reactants, self.reactant_names) # This reactions should give multiple possible products def test_if_get_products_returns_all_possible_products(self): reactants = [ (("NCCNC", "OC(C)=O"), ("CNCCNC(C)=O", "NCCN(C(C)=O)C")), (("CNCCNC", "OC(C)=O"), ("CNCCN(C)C(C)=O", "CNCCN(C)C(C)=O")), (("N", "OC(CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O)=O"), ["OC(CN(CC(O)=O)CCN(CC(N)=O)CC(O)=O)=O"]*4), ] self._test_all_possible_products(reactants, self.reactant_names) def test_if_get_products_returns_only_1_products_if_symmetrical_as_one_is_true(self): reactants = [ (("NCCNC", "OC(C)=O"), ["CNCCNC(C)=O", "NCCN(C(C)=O)C"]), (("CNCCNC", "OC(C)=O"), ["CNCCN(C)C(C)=O"]), (("N", "OC(CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O)=O"), ["OC(CN(CC(O)=O)CCN(CC(N)=O)CC(O)=O)=O"]), ] self._test_all_possible_products(reactants, self.reactant_names, symmetrical_as_one=True) def test_if_get_product_returns_the_symmetric_product_if_symmetrical_as_one_is_true(self): reactants = [ (("CNCCNC", "OC(C)=O"), "CNCCN(C)C(C)=O"), (("N", "OC(CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O)=O"), "OC(CN(CC(O)=O)CCN(CC(N)=O)CC(O)=O)=O"), ] self._test_one_product(reactants, self.reactant_names, symmetrical_as_one=True)