import os import argparse import torch from networks.net_factory import net_factory from utils.test_patch import test_all_case parser = argparse.ArgumentParser() parser.add_argument('--name', type=str, default='CoactSeg', help='name') parser.add_argument('--root_path', type=str, default='./', help='Name of Experiment') parser.add_argument('--exp', type=str, default='reg', help='exp_name') parser.add_argument('--model', type=str, default='vnet', help='model_name') parser.add_argument('--gpu', type=str, default='0', help='GPU to use') parser.add_argument('--detail', type=int, default=1, help='print metrics for every samples?') parser.add_argument('--nms', type=int, default=0, help='apply NMS post-procssing?') FLAGS = parser.parse_args() os.environ['CUDA_VISIBLE_DEVICES'] = FLAGS.gpu snapshot_path = FLAGS.root_path + "model/{}_{}/{}".format(FLAGS.name, FLAGS.exp, FLAGS.model) test_save_path = FLAGS.root_path + "model/{}_{}/{}_predictions/".format(FLAGS.name, FLAGS.exp, FLAGS.model) num_classes = 2 patch_size = (80, 80, 80) FLAGS.root_path = FLAGS.root_path + 'data/' with open(FLAGS.root_path + '/val.list', 'r') as f: image_list = f.readlines() image_list = [item.replace('\n','') for item in image_list] if not os.path.exists(test_save_path): os.makedirs(test_save_path) print(test_save_path) def test_calculate_metric(): net = net_factory(net_type=FLAGS.model, in_chns=3, class_num=num_classes, mode="test") save_mode_path = os.path.join(snapshot_path, '{}_best_model.pth'.format(FLAGS.model)) net.load_state_dict(torch.load(save_mode_path), strict=False) print("init weight from {}".format(save_mode_path)) net.eval() avg_metric = test_all_case(FLAGS.model, 1, net, image_list, num_classes=num_classes, patch_size=(80, 80, 80), stride_xy=20, stride_z=20, save_result=True, test_save_path=test_save_path, metric_detail=FLAGS.detail, nms=FLAGS.nms) return avg_metric if __name__ == '__main__': metric = test_calculate_metric() print(metric)