import argparse import os import sys import numpy as np import torch import torch.nn as nn import torchvision from PIL import Image from torch.utils.data import DataLoader, Dataset from utils.vis_utils import vis_trun parser = argparse.ArgumentParser(description='Stage IV') parser.add_argument('--unet-checkpoint', type=str) parser.add_argument('--stage3-output', type=str) parser.add_argument('--stage4-output', type=str) args = parser.parse_args() class TestDiceLoss(nn.Module): def __init__(self): super(TestDiceLoss, self).__init__() def forward(self, y_true, y_pred, **kwargs): """ compute mean dice for binary segmentation map via numpy """ intersection = torch.sum(torch.abs(y_pred * y_true), [1, 2, 3]) mask_sum = torch.sum(torch.abs(y_true), [1, 2, 3]) + torch.sum(torch.abs(y_pred), [1, 2, 3]) smooth = .000001 dice = 1 - 2 * (intersection + smooth) / (mask_sum + smooth) return dice class PairDatset(Dataset): def __init__(self, data_path): self.data_path = data_path self.images = [] self.masks = [] self.turn = torchvision.transforms.ToTensor() for root, dirs, files in os.walk(data_path): for file in files: path = str(os.path.join(self.data_path, file)) if file.startswith("image_"): self.images.append(path) elif file.startswith("mask_"): self.masks.append(path) else: continue import re self.indexs = [re.findall(r"\d+", str(self.images[i]))[-1] for i in range(len(self.images))] # print(self.indexs) # exit(-1) def __len__(self): return len(self.indexs) def __getitem__(self, item): image_path = os.path.join(self.data_path, "image_" + str(self.indexs[item]) + ".png") mask_path = os.path.join(self.data_path, "mask_" + str(self.indexs[item]) + ".png") image, mask = Image.open(image_path).convert("L"), Image.open(mask_path).convert("L") image, mask = self.turn(image), self.turn(mask) mask = (mask > 0.5).float() return image, mask #, self.indexs[item] def classifier(model_path): from backbone import UNet classifier_fn = UNet(n_classes=1, n_channels=1) classifier_fn.load_state_dict(torch.load(model_path, map_location="cpu")) classifier_fn = classifier_fn.cuda() return classifier_fn class DiceLoss(nn.Module): """Dice loss, need one hot encode input Args: weight: An array of shape [num_classes,] ignore_index: class index to ignore predict: A tensor of shape [N, C, *] target: A tensor of same shape with predict other args pass to BinaryDiceLoss Return: same as BinaryDiceLoss """ def __init__(self, weight=None, ignore_index=None, **kwargs): super(DiceLoss, self).__init__() self.kwargs = kwargs self.weight = weight self.ignore_index = ignore_index self.epsilon = 1e-5 def forward(self, predict, target): assert predict.size() == target.size(), "the size of predict and target must be equal." num = predict.size(0) pre = predict.view(num, -1) tar = target.view(num, -1) intersection = (pre * tar).sum(-1) # 利用预测值与标签相乘当作交集 union = (pre + tar).sum(-1) score = 1 - 2 * (intersection + self.epsilon) / (union + self.epsilon) return score def choose(model_path, data_path, save_path, tau=0.2): classifier_fn = classifier(model_path) dataset = PairDatset(data_path) if not os.path.exists(save_path): os.makedirs(save_path) dataloader = DataLoader(dataset, num_workers=4, shuffle=False, batch_size=1) pass_list = [] no_pass_list = [] dice_loss = TestDiceLoss() with torch.no_grad(): classifier_fn.eval() for i, (image, label, indexs) in enumerate(dataloader): image, label = image.cuda(), label.cuda() pred = (classifier_fn(image).sigmoid() > 0.5).float() label = label.float() dices = dice_loss(pred, label).tolist() print(dices) j = 0 for (dice, index) in zip(dices, indexs): if_good = dice < tau if if_good: pass_list.append([image[j], label[j]]) elif dice < tau * 2: pass_list.append([image[j], pred[j]]) else: no_pass_list.append([image[j], label[j]]) j += 1 turn = torchvision.transforms.ToPILImage() print(f"{len(pass_list) / (len(pass_list) + len(no_pass_list))}") # tau = 1/1 0.7% 4.234% # tau = 1/2 0.7% 4.567% # tau = 1/3 -- 4.725% for i in range(len(pass_list)): image = pass_list[i][0].cpu() mask = pass_list[i][1].cpu() image = turn(image) mask = turn(mask) image.save(f"{save_path}/image_{i}.png") mask.save(f"{save_path}/mask_{i}.png") if __name__ == "__main__": choose(args.unet_checkpoint, args.stage3_output, args.stage4_output, 0.065)