import pandas as pd import numpy as np from rdkit import Chem from rdkit.Chem import Draw, AllChem import os import pickle def load_models(): model_names = ["RidgeClassifierCV", "SVC_linear", "SVC_rbf", "KNN_dist", "KNN_uniform", "RandomForest", "GaussianProcess", "AdaBoost", "MLP", "GradientBoosting"] models = {} for name in model_names: model_path = f'{name}_model.pkl' if os.path.exists(model_path): with open(model_path, 'rb') as file: models[name] = pickle.load(file) else: print(f"Model file {model_path} not found. Please check the directory.") return models def predict_new_compounds(models, smiles): mol = Chem.MolFromSmiles(smiles) if mol: canonical_smiles = Chem.MolToSmiles(mol, isomericSmiles=True) fp = AllChem.GetMorganFingerprintAsBitVect(mol, radius=2, nBits=2048) X_new = np.array([fp]) predictions = {} for name, model in models.items(): predictions[name] = model.predict(X_new)[0] # Using predict instead of predict_proba predictions['Average'] = np.mean([float(val) for val in predictions.values()]) return canonical_smiles, predictions else: return None, "Invalid SMILES string" def find_compound_in_excel(canonical_input_smiles, filepath): try: df = pd.read_excel(filepath, engine='openpyxl') # Normalize the SMILES in the DataFrame df['Canonical SMILES'] = df['SMILES'].apply(lambda x: Chem.MolToSmiles(Chem.MolFromSmiles(x), isomericSmiles=True) if pd.notna(x) else None) # Find the row with the matching canonical SMILES matches = df[df['Canonical SMILES'] == canonical_input_smiles] if not matches.empty: return matches[['Item Description', 'CAS']].iloc[0] else: return "No matching compound found in the Excel file." except FileNotFoundError: return "Excel file not found." except Exception as e: return f"An error occurred: {str(e)}" def display_molecule(smiles): mol = Chem.MolFromSmiles(smiles) if mol: img = Draw.MolToImage(mol) img.show() else: print("Invalid SMILES string.") def main(): print("Welcome to the SMILES compound analyzer!") smiles_input = input("Please enter a SMILES string: ") models = load_models() canonical_smiles, predictions = predict_new_compounds(models, smiles_input) if isinstance(predictions, dict): print(f"Canonical SMILES: {canonical_smiles}") print("Prediction scores:") for model, score in predictions.items(): print(f"{model}: {score}") #display_molecule(canonical_smiles) else: print(predictions) compound_info = find_compound_in_excel(canonical_smiles, 'screening_chemscrene_50USD_MW500.xlsx') if isinstance(compound_info, pd.Series): #excel_info_label.config(text=f"Found in Excel: Description - {compound_info['Item Description']}, CAS - {compound_info['CAS']}") print(f"Found in Excel: Description - {compound_info['Item Description']}, CAS - {compound_info['CAS']}") else: excel_info_label.config(text=compound_info) if __name__ == "__main__": main()