data/add-batch-annotated-validator/add-batch-annotated-validator/flow.xml

<?xml version="1.0" encoding="ISO-8859-1" ?>
<flow name="fast_tst_workflow">
    <object name="workflowParameters"/>
    <object name="annotation_table"/>
    <collection name="spectra"/>

    <action name="begin">
        <output port="spec" collection="spectra"/>
        <output port="annotation_table" object="annotation_table"/>
        <output port="flowParams" object="workflowParameters"/>
    </action>

    <collection name="demangled_spectra"/>
    <action name="demangle_spectra">
            <input  port="spectra"             collection="spectra"/>
            <input  port="workflowParameters"             object="workflowParameters"/>
            <output port="demangled_spectra"           collection="demangled_spectra"/>
    </action>

    <!-- <collection name="validation_information"/>
    <collection name="control_flow_dependency"/>

    <action name="validate_batch">
        <input port="flowParams" object="workflowParameters"/>
        <input port="annotation_table" object="annotation_table"/>
        <output port="validation_information" collection="validation_information"/>
        <output port="control_flow_dependency" object="control_flow_dependency"/>
    </action>

    <collection name="spectrapklbin"/>
    <action name="convertpklbin">
        <input port="control_flow_dependency" object="control_flow_dependency"/>
        <input port="spectra" collection="spectra"/>
        <output port="convertedspectra" collection="spectrapklbin"/>
    </action>

    <object name="result"/>
    <object name="newspectraResult"/>
    <object name="new_spectra_mgf"/>
    <action name="createlib">
        <input port="flowParams" object="workflowParameters"/>
        <input port="spec" collection="spectrapklbin"/>
        <input port="annotation_table_with_id" object="annotation_table"/>
        <output port="result" object="result"/>
        <output port="newspectraResult" object="newspectraResult"/>
        <output port="new_spectra_mgf" object="new_spectra_mgf"/>
    </action>

    <object name="formattedResult"/>
    <action name="formatResult">
        <input port="annotation_table" object="annotation_table"/>
        <input port="workflowParameters" object="workflowParameters"/>
        <output port="formattedResult" object="formattedResult"/>
    </action> -->

    <collection name="workflow_results"/>
    <action name="nf_process">
        <input  port="spectra"             collection="spectra"/>
        <input  port="annotation_table"              object="annotation_table"/>
        <input  port="workflowParameters"            object="workflowParameters"/>
        <output port="workflow_results"              collection="workflow_results"/>
    </action>

    <action name="end">
        <input port="workflow_results" collection="workflow_results"/>
    </action>
</flow>