File size: 1,839 Bytes
9aaa76b | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 | a <- tempdir()
a <- idbac_create("temp",
a)
a <- idbac_connect("temp",
dirname(a))[[1]]
b <- DBI::dbListTables(a)
test_that("idbac_create() creates the correct tables", {
expect_true("locale" %in% b)
expect_true("mass_index" %in% b)
expect_true("metadata" %in% b)
expect_true("spectra" %in% b)
expect_true("version" %in% b)
expect_true("xml" %in% b)
})
z <- lapply(b, function(x) paste0(DBI::dbListFields(a, x), collapse = "|"))
names(z) <- b
test_that("idbac_create() creates the correct fields", {
expect_equal(z$locale,
"locale")
expect_equal(z$mass_index,
"spectrum_mass_hash|mass_vector")
expect_equal(z$metadata,
"strain_id|genbank_accession|ncbi_taxid|kingdom|phylum|class|order|family|genus|species|maldi_matrix|dsm_cultivation_media|cultivation_temp_celsius|cultivation_time_days|cultivation_other|user_firstname_lastname|user_orcid|pi_firstname_lastname|pi_orcid|dna_16s")
expect_equal(z$spectra,
"spectrum_mass_hash|spectrum_intensity_hash|xml_hash|strain_id|peak_matrix|spectrum_intensity|max_mass|min_mass|ignore|number|time_delay|time_delta|calibration_constants|v1_tof_calibration|data_type|data_system|spectrometer_type|inlet|ionization_mode|acquisition_method|acquisition_date|acquisition_mode|tof_mode|acquisition_operator_mode|laser_attenuation|digitizer_type|flex_control_version|id|instrument|instrument_id|instrument_type|mass_error|laser_shots|patch|path|laser_repetition|spot|spectrum_type|target_count|target_id_string|target_serial_number|target_type_number")
expect_equal(z$version,
"idbac_version|r_version|db_version")
expect_equal(z$xml,
"xml_hash|xml|manufacturer|model|ionization|analyzer|detector|instrument_metafile")
})
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