| #' Search an IDBac database to see which sample IDs have protein or small molecule data | |
| #' | |
| #' @param type "protein", "small", | |
| #' @param pool single IDBac pool connection | |
| #' | |
| #' @return vector of sample names in database with protein or small mol spectra | |
| #' @export | |
| #' | |
| idbac_available_samples <- function(pool, | |
| type){ | |
| if (!inherits(type, "character")) stop("Provided value for 'type' wasn't character.") | |
| switch(type, | |
| "protein" = assign("sym", "WHERE max_mass > 6000"), | |
| "small" = assign("sym", "WHERE max_mass < 6000"), | |
| "all" = assign("sym", "")) | |
| query <- glue::glue("SELECT DISTINCT `strain_id` | |
| FROM `spectra` | |
| {sym}") | |
| query <- DBI::dbGetQuery(pool, query) | |
| return(query[ , 1]) | |
| } | |