a <- tempdir() a <- idbac_create("temp", a) a <- idbac_connect("temp", dirname(a))[[1]] b <- DBI::dbListTables(a) test_that("idbac_create() creates the correct tables", { expect_true("locale" %in% b) expect_true("mass_index" %in% b) expect_true("metadata" %in% b) expect_true("spectra" %in% b) expect_true("version" %in% b) expect_true("xml" %in% b) }) z <- lapply(b, function(x) paste0(DBI::dbListFields(a, x), collapse = "|")) names(z) <- b test_that("idbac_create() creates the correct fields", { expect_equal(z$locale, "locale") expect_equal(z$mass_index, "spectrum_mass_hash|mass_vector") expect_equal(z$metadata, "strain_id|genbank_accession|ncbi_taxid|kingdom|phylum|class|order|family|genus|species|maldi_matrix|dsm_cultivation_media|cultivation_temp_celsius|cultivation_time_days|cultivation_other|user_firstname_lastname|user_orcid|pi_firstname_lastname|pi_orcid|dna_16s") expect_equal(z$spectra, "spectrum_mass_hash|spectrum_intensity_hash|xml_hash|strain_id|peak_matrix|spectrum_intensity|max_mass|min_mass|ignore|number|time_delay|time_delta|calibration_constants|v1_tof_calibration|data_type|data_system|spectrometer_type|inlet|ionization_mode|acquisition_method|acquisition_date|acquisition_mode|tof_mode|acquisition_operator_mode|laser_attenuation|digitizer_type|flex_control_version|id|instrument|instrument_id|instrument_type|mass_error|laser_shots|patch|path|laser_repetition|spot|spectrum_type|target_count|target_id_string|target_serial_number|target_type_number") expect_equal(z$version, "idbac_version|r_version|db_version") expect_equal(z$xml, "xml_hash|xml|manufacturer|model|ionization|analyzer|detector|instrument_metafile") })