import os import numpy as np import torch.utils.data as data import torchvision.transforms as transforms import random import cv2 import torch import glob from albumentations import RandomBrightness, RandomContrast, CLAHE, RandomBrightnessContrast ########################### Data Augmentation ########################### class Normalize(object): def __init__(self, mean=[124.55, 118.90, 102.94], std=[ 56.77, 55.97, 57.50]): self.mean = mean self.std = std def __call__(self, image, mask=None): mean = np.array([[self.mean]]) std = np.array([[self.std]]) image = (image - mean)/std if mask is None: return image return image, mask/255 class RandomVerticalFlip(object): # 垂直镜像翻转 def __call__(self, image, mask=None): if random.random() < 0.5: if mask is None: return image[::-1,:,:].copy() return image[::-1,:,:].copy(), mask[::-1, :].copy() else: if mask is None: return image return image, mask class RandomHorizontalFlip(object): # 水平镜像翻转 def __call__(self, image, mask=None): if random.random() < 0.5: if mask is None: return image[:,::-1,:].copy() return image[:,::-1,:].copy(), mask[:,::-1].copy() else: if mask is None: return image return image, mask class RandomRotate(object): # 随机旋转 def rotate(self, x, random_angle, mode='image'): if mode == 'image': H, W, _ = x.shape else: H, W = x.shape image_change = cv2.getRotationMatrix2D((W/2, H/2), random_angle, 1) image_rotated = cv2.warpAffine(x, image_change, (W, H)) return image_rotated def __call__(self, image, mask=None): if random.random() < 0.5: random_angle = np.random.randint(-90, 90) if mask is None: image = self.rotate(image, random_angle, 'image') return image image = self.rotate(image, random_angle, 'image') mask = self.rotate(mask, random_angle, 'mask') return image, mask else: if mask is None: return image return image, mask class Padding(object): # 填充 def __call__(self, image, mask=None): h, w = image.shape[0], image.shape[1] s = max(h, w) h_pad = s - h w_pad = s - w h_pad_0 = h_pad // 2 h_pad_1 = h_pad - h_pad_0 w_pad_0 = w_pad // 2 w_pad_1 = w_pad - w_pad_0 image = np.pad(image, pad_width=((h_pad_0, h_pad_1), (w_pad_0, w_pad_1), (0, 0)), mode='constant', constant_values=(0)) if mask is None: return image else: mask = np.pad(mask, pad_width=((h_pad_0, h_pad_1), (w_pad_0, w_pad_1)), mode='constant', constant_values=(0)) return image, mask class Aug_Compose(object): def __init__(self, transforms, p): self.transforms = transforms self.p = p def __call__(self, image): if (random.random() < self.p): for t in self.transforms: image = t(image=image)['image'] return image def do_nothing(image=None): img_lab = {} img_lab['image'] = image return img_lab def enable_if(condition, obj): return obj if condition else do_nothing class GrayAugmentation(object): # 对比度及亮度增强 """ Transform to be used during training. 以下数据增强是官方实现的,可参考链接:https://albumentations.ai/docs/api_reference/augmentations/transforms/ """ def __init__(self, p=0.9): self.augment = Aug_Compose([ # enable_if(args.aug_brightness, RandomBrightness(limit=0.2, always_apply=False, p=0.5)), # 随机改变输入图像的亮度 # enable_if(args.aug_contrast, RandomContrast(limit=0.2, always_apply=False, p=0.5)), # 随机改变输入图像的对比度 enable_if(1, RandomBrightnessContrast(brightness_limit=0.2, contrast_limit=0.2, brightness_by_max=True, always_apply=False, p=0.5)), # 随机改变输入图像的对比度和亮度 enable_if(1, CLAHE(clip_limit=1.5, tile_grid_size=(8, 8), always_apply=False, p=0.5)), # 将对比度受限的自适应直方图均衡应用于输入图像 ], p=p) def __call__(self, image): image = self.augment(image) return image class Resize(object): def __init__(self, H, W): self.H = H self.W = W def __call__(self, image, mask=None): image = cv2.resize(image, dsize=(self.W, self.H), interpolation=cv2.INTER_LINEAR) if mask is None: return image mask = cv2.resize( mask, dsize=(self.W, self.H), interpolation=cv2.INTER_LINEAR) return image, mask class ToTensor(object): def __call__(self, image, mask=None): image = torch.from_numpy(image) image = image.permute(2, 0, 1) if mask is None: return image mask = torch.from_numpy(mask) return image, mask class MedDataset(data.Dataset): def __init__(self, trainsize, file, mode): self.trainsize = trainsize self.mode = mode sal_image = [] sal_mask = [] if '.lst' in file: with open(file, 'r') as f: sal_image = [x.strip() for x in f.readlines() if os.path.exists(x.strip())] sal_mask = [i.replace('Image', 'Mask').replace('.png', '_mask.png') for i in sal_image] else: sal_image = glob.glob(f"{file}/*") sal_image = [i for i in sal_image if 'mask' not in i] sal_mask = [i.replace('.png', '_mask.png') for i in sal_image] self.images = sal_image self.gts = sal_mask self.images = sorted(self.images) self.gts = sorted(self.gts) self.cv_normalize = Normalize([124.55, 118.90, 102.94], [56.77, 55.97, 57.50]) self.cv_verticalflip = RandomVerticalFlip() self.cv_horizontalflip = RandomHorizontalFlip() self.cv_rotate = RandomRotate() self.cv_resize = Resize(224,224) self.cv_grayaug = GrayAugmentation() self.totensor = ToTensor() self.cv_pad = Padding() def __getitem__(self, index): name = self.images[index].split('/')[-1] try: image = cv2.imread(self.images[index]) except: print(f"{self.images[index]} load error!!") if self.mode == 'train': try: mask = cv2.imread(self.gts[index], 0) except: print(f"{self.gts[index]} load error!!") image = self.cv_grayaug(image) image, mask = self.cv_pad(image, mask) image, mask = self.cv_verticalflip(image, mask) image, mask = self.cv_horizontalflip(image, mask) image, mask = self.cv_rotate(image, mask) image, mask = self.cv_normalize(image, mask) return image, mask elif self.mode == 'valid': try: mask = cv2.imread(self.gts[index], 0) except: print(f"{self.gts[index]} load error!!") image, mask = self.cv_pad(image, mask) image, mask = self.cv_normalize(image, mask) return image, mask else: shape = image.shape[:2] image = self.cv_pad(image) image = self.cv_normalize(image) image = self.cv_resize(image) image = self.totensor(image) return image, shape, name def __len__(self): return len(self.images) def collate(self, batch): size = self.trainsize[np.random.randint(0, 6)] # size = self.trainsize image, mask = [list(item) for item in zip(*batch)] for i in range(len(batch)): image[i] = cv2.resize(image[i], dsize=(size, size), interpolation=cv2.INTER_LINEAR).astype(np.float32) # 转为float32格式 mask[i] = cv2.resize(mask[i], dsize=(size, size), interpolation=cv2.INTER_LINEAR).astype(np.float32) image = torch.from_numpy(np.stack(image, axis=0)).permute(0,3,1,2) mask = torch.from_numpy(np.stack(mask, axis=0)).unsqueeze(1) return image, mask def get_loader(batchsize, trainsize, shuffle=True, num_workers=12, pin_memory=True, file=None, mode='train'): dataset = MedDataset(trainsize, file, mode) data_loader = data.DataLoader(dataset=dataset, collate_fn=dataset.collate, batch_size=batchsize, shuffle=shuffle, num_workers=num_workers, pin_memory=pin_memory) return data_loader