import os import shutil import torch import numpy as np import torch.nn.functional as F from thop import profile from thop import clever_format import matplotlib.pyplot as plt from pathlib import Path def adjust_lr(optimizer, init_lr, epoch, decay_rate=0.1, decay_epoch=30): decay = decay_rate ** (epoch // decay_epoch) for param_group in optimizer.param_groups: param_group['lr'] = decay*init_lr lr=param_group['lr'] return lr def create_exp_dir(path, scripts_path_to_save=None): if not os.path.exists(path): os.mkdir(path) print('Experiment dir : {}'.format(path)) p = Path(scripts_path_to_save) py_list = list(p.glob("*.py")) + list(p.glob("**/*.py")) for root in py_list: py_path = str(root) if "save" in py_path: continue elif "lib" in py_path: save_path = os.path.join(path, "code", "lib") elif "utils" in py_path: save_path = os.path.join(path, "code", "utils") else: save_path = os.path.join(path, "code") os.makedirs(save_path, exist_ok=True) dst_file = os.path.join(save_path, py_path.split('/')[-1]) shutil.copyfile(py_path, dst_file) def dice_coef(result, reference): result = np.atleast_1d(result.astype(np.bool_)) reference = np.atleast_1d(reference.astype(np.bool_)) intersection = np.count_nonzero(result & reference) size_i1 = np.count_nonzero(result) size_i2 = np.count_nonzero(reference) try: dc = 2. * intersection / float(size_i1 + size_i2) except ZeroDivisionError: dc = 0.0 return dc def structure_loss(pred, mask): """ loss function (ref: F3Net-AAAI-2020) """ weit = 1 + 5 * torch.abs(F.avg_pool2d(mask, kernel_size=31, stride=1, padding=15) - mask) wbce = F.binary_cross_entropy_with_logits(pred, mask, reduction='mean') wbce = (weit * wbce).sum(dim=(2, 3)) / weit.sum(dim=(2, 3)) pred = torch.sigmoid(pred) inter = ((pred * mask) * weit).sum(dim=(2, 3)) union = ((pred + mask) * weit).sum(dim=(2, 3)) wiou = 1 - (inter + 1) / (union - inter + 1) return (wbce + wiou).mean() def plot_image(path, epoch_losses, epoch_dices, epoch_val_losses, epoch_val_dices): losses = np.array(epoch_losses) dices = np.array(epoch_dices) val_losses = np.array(epoch_val_losses) val_dices = np.array(epoch_val_dices) # 数据可视化 # 训练集损失 plt.figure(figsize=(6, 6)) plt.plot(losses, lw=1.5) plt.title('Train Loss') plt.xlabel('Epoch Number') plt.ylabel('Loss') plt.savefig(f'{path}/train_loss.png') # 训练集dice系数 plt.figure(figsize=(6, 6)) plt.plot(dices, lw=1.5) plt.title('Train Dice') plt.xlabel('Epoch Number') plt.ylabel('Dice') plt.savefig(f'{path}/train_dice.png') # 验证集损失 plt.figure(figsize=(6, 6)) plt.plot(val_losses, lw=1.5) plt.title('Valid Loss') plt.xlabel('Epoch Number') plt.ylabel('Loss') plt.savefig(f'{path}/valid_loss.png') # 验证集dice系数 plt.figure(figsize=(6, 6)) plt.plot(val_dices, lw=1.5) plt.title('Valid Dice') plt.xlabel('Epoch Number') plt.ylabel('Dice') plt.savefig(f'{path}/valid_dice.png') class AvgMeter(object): def __init__(self, num=40): self.num = num self.reset() def reset(self): self.val = 0 self.avg = 0 self.sum = 0 self.count = 0 self.losses = [] def update(self, val, n=1): self.val = val self.sum += val * n self.count += n self.avg = self.sum / self.count self.losses.append(val) def show(self): return torch.mean(torch.stack(self.losses[np.maximum(len(self.losses)-self.num, 0):])) def CalParams(model, input_tensor): """ Usage: Calculate Params and FLOPs via [THOP](https://github.com/Lyken17/pytorch-OpCounter) Necessarity: from thop import profile from thop import clever_format :param model: :param input_tensor: :return: """ flops, params = profile(model, inputs=(input_tensor,)) flops, params = clever_format([flops, params], "%.3f") print('[Statistics Information]\nFLOPs: {}\nParams: {}'.format(flops, params))