import torch import numpy as np import torch.nn.functional as F import matplotlib.pyplot as plt def adjust_lr(optimizer, init_lr, epoch, decay_rate=0.1, decay_epoch=30): decay = decay_rate ** (epoch // decay_epoch) for param_group in optimizer.param_groups: param_group['lr'] = decay*init_lr lr=param_group['lr'] return lr def dice_coef(result, reference): result = np.atleast_1d(result.astype(np.bool_)) reference = np.atleast_1d(reference.astype(np.bool_)) intersection = np.count_nonzero(result & reference) size_i1 = np.count_nonzero(result) size_i2 = np.count_nonzero(reference) try: dc = 2. * intersection / float(size_i1 + size_i2) except ZeroDivisionError: dc = 0.0 return dc def structure_loss(pred, mask): """ loss function (ref: F3Net-AAAI-2020) """ weit = 1 + 5 * torch.abs(F.avg_pool2d(mask, kernel_size=31, stride=1, padding=15) - mask) wbce = F.binary_cross_entropy_with_logits(pred, mask, reduction='mean') wbce = (weit * wbce).sum(dim=(2, 3)) / weit.sum(dim=(2, 3)) pred = torch.sigmoid(pred) inter = ((pred * mask) * weit).sum(dim=(2, 3)) union = ((pred + mask) * weit).sum(dim=(2, 3)) wiou = 1 - (inter + 1) / (union - inter + 1) return (wbce + wiou).mean() def plot_image(path, epoch_losses, epoch_dices, epoch_val_losses, epoch_val_dices): losses = np.array(epoch_losses) dices = np.array(epoch_dices) val_losses = np.array(epoch_val_losses) val_dices = np.array(epoch_val_dices) plt.figure(figsize=(6, 6)) plt.plot(losses, lw=1.5) plt.title('Train Loss') plt.xlabel('Epoch Number') plt.ylabel('Loss') plt.savefig(f'{path}/train_loss.png') plt.figure(figsize=(6, 6)) plt.plot(dices, lw=1.5) plt.title('Train Dice') plt.xlabel('Epoch Number') plt.ylabel('Dice') plt.savefig(f'{path}/train_dice.png') plt.figure(figsize=(6, 6)) plt.plot(val_losses, lw=1.5) plt.title('Valid Loss') plt.xlabel('Epoch Number') plt.ylabel('Loss') plt.savefig(f'{path}/valid_loss.png') plt.figure(figsize=(6, 6)) plt.plot(val_dices, lw=1.5) plt.title('Valid Dice') plt.xlabel('Epoch Number') plt.ylabel('Dice') plt.savefig(f'{path}/valid_dice.png')