"""Test experiments train, valid, and test. mocker.patch, https://pytest-mock.readthedocs.io/en/latest/ """ import shutil from tempfile import TemporaryDirectory import pytest from pytest_mock import MockFixture from imgx.run_test import main as run_test from imgx.run_train import main as run_train from imgx.run_valid import main as run_valid @pytest.mark.integration() @pytest.mark.parametrize( "dataset", ["muscle_us", "amos_ct"], ) def test_segmentation_train_valid_test(mocker: MockFixture, dataset: str) -> None: """Test train, valid, and test. Args: mocker: mocker, a wrapper of unittest.mock. dataset: dataset name. """ with TemporaryDirectory() as temp_dir: mocker.resetall() mocker.patch.dict("os.environ", {"WANDB_MODE": "offline"}) mocker.patch( "sys.argv", ["pytest", "debug=true", "task=seg", f"data={dataset}", f"logging.root_dir={temp_dir}"], ) run_train() # pylint: disable=no-value-for-parameter mocker.patch( "sys.argv", ["pytest", f"--log_dir={temp_dir}/wandb/latest-run"], ) run_valid() run_test() shutil.rmtree(temp_dir) @pytest.mark.integration() @pytest.mark.parametrize( "dataset", ["muscle_us", "amos_ct"], ) def test_diffusion_segmentation_train_valid_test(mocker: MockFixture, dataset: str) -> None: """Test train, valid, and test. Args: mocker: mocker, a wrapper of unittest.mock. dataset: dataset name. """ with TemporaryDirectory() as temp_dir: mocker.resetall() mocker.patch.dict("os.environ", {"WANDB_MODE": "offline"}) mocker.patch( "sys.argv", [ "pytest", "debug=true", "task=gaussian_diff_seg", f"data={dataset}", f"logging.root_dir={temp_dir}", ], ) run_train() # pylint: disable=no-value-for-parameter mocker.patch( "sys.argv", [ "pytest", "--num_timesteps=2", "--sampler=DDPM", f"--log_dir={temp_dir}/wandb/latest-run", ], ) run_valid() run_test() shutil.rmtree(temp_dir)