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"""Setup MARBLE."""
import numpy
from Cython.Build import cythonize
from setuptools import Extension
from setuptools import find_packages
from setuptools import setup
setup(
name="MARBLE",
version="1.0",
author="Adam Gosztolai",
author_email="a.gosztolai@gmail.com",
description="""Package for the unsupervised data-driven representation of non-linear dynamics
over manifolds based on a statistical distribution of local flow fields""",
long_description=open("README.md", "r").read(),
long_description_content_type="text/markdown",
install_requires=[
"matplotlib",
"pandas",
"numpy<2.0", # to prevent some conflicts with other installations, to be solved later
"scipy",
"networkx",
"seaborn",
"torch",
"pympl",
"tensorboardX",
"pyyaml",
"POT",
"umap-learn",
"mat73",
"wget",
],
packages=find_packages(),
include_package_data=True,
package_data={"MARBLE.lib": ["ptu_dijkstra.pyx", "ptu_dijkstra.c"]},
ext_modules=cythonize(
Extension(
"ptu_dijkstra", ["MARBLE/lib/ptu_dijkstra.pyx"], include_dirs=[numpy.get_include()]
)
),
)
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